Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stegastes_20partitus_20[refseq_20GCF_5F000690725.1_202014-05-13] 5,818 sequences; 800,491,834 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq1047 156 3e-33 seq1310 147 2e-30 >seq1047 Length=257186 Score = 156 bits (172), Expect = 3e-33 Identities = 181/244 (74%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 69074 GGTGAACGGATGGGGAAAGTTTTATATCCCCACCGCCGTGACGATGCAGGTCATCGGTTA 69133 ||||||||| ||||||||||| || | |||| |||| |||||||| | ||| Sbjct 166415 GGTGAACGGTTGGGGAAAGTTCTACCTTCCCAAGATAGTGAACATGCAGGTTGTAGGTGT 166474 Query 69134 TGTGACGGGAACTCCATACCAATGTGACCAGCTTGTCCTGATGACCTGCGAGGACCAGAA 69193 ||| |||||| ||| || |||||||||||||| |||||||| || |||||| | || Sbjct 166475 GGTGGAGGGAACGTCATGTCACTGTGACCAGCTTGTTCTGATGACATGTGAGGACAAAAA 166534 Query 69194 GGTGTACGGCTATGACGGAGACGAGCTGCATGTGGTGGCTAACTGTCTGGATCAGATGGG 69253 | |||||| ||| || ||||| ||||||||| |||||||| | ||||| | | || Sbjct 166535 GCTGTACGCCTACGATGGAGAGGAGCTGCATCTGGTGGCTTCAAGCCTGGAGCGACTTGG 166594 Query 69254 GGAAGAAGGAATAGCCTATCCTGCATTCCAGAGCTATTATCATGGGGAGGCCTTCAAACA 69313 || | | ||||| ||||| |||| | ||||||| || | |||||||||||| | | Sbjct 166595 TGACAAGGAAATAGAATATCCAGCATCCAAGAGCTACTACAACGGGGAGGCCTTCGATGA 166654 Query 69314 TATG 69317 |||| Sbjct 166655 TATG 166658 Score = 131 bits (144), Expect = 1e-25 Identities = 153/207 (74%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 69111 GTGACGATGCAGGTCATCGGTTATGTGACGGGAACTCCATACCAATGTGACCAGCTTGTC 69170 |||| | |||||| | ||| ||| |||||| ||| ||| |||||||||||||| Sbjct 176071 GTGAACAGGCAGGTTGTAGGTGTGGTGGAGGGAACGTCATGCCACTGTGACCAGCTTGTT 176130 Query 69171 CTGATGACCTGCGAGGACCAGAAGGTGTACGGCTATGACGGAGACGAGCTGCATGTGGTG 69230 |||||||| || |||||| | ||| |||||| ||| || ||||| ||||||||| ||||| Sbjct 176131 CTGATGACATGTGAGGACAAAAAGCTGTACGCCTACGATGGAGAGGAGCTGCATCTGGTG 176190 Query 69231 GCTAACTGTCTGGATCAGATGGGGGAAGAAGGAATAGCCTATCCTGCATTCCAGAGCTAT 69290 || | ||||| | | || || | | ||||| ||||| |||| | ||||||| Sbjct 176191 GCGTCAAGCCTGGAGCGACTTGGTGACAAGGAAATAGAATATCCAGCATCCAAGAGCTAC 176250 Query 69291 TATCATGGGGAGGCCTTCAAACATATG 69317 || | |||||||||||| | ||||| Sbjct 176251 TACAACGGGGAGGCCTTCGATGATATG 176277 Score = 113 bits (124), Expect = 3e-20 Identities = 173/247 (70%), Gaps = 11/247 (4%) Strand=Plus/Plus Query 69072 GTGGTGAACGGATGGGGAAAGTTTTATATCCCCACCGCCGTGACGATGCAGGTCATCGGT 69131 ||||||||||| ||||| ||||| || ||||| | || || |||||||| | ||| Sbjct 156118 GTGGTGAACGGGTGGGGGAAGTTCTACCTCCCCGAGACAGTAACCATGCAGGTTGTAGGT 156177 Query 69132 TATGTGACGGGAACTCCATACCAATGTGACCAGCTTGTCCTGATGACCTGCGAGGACCAG 69191 || ||| || || |||| ||||||||||| || |||||| |||| || ||| | Sbjct 156178 GTGGTTGAGGGCACACCGTACCCGTGTGACCAGCTAGTTCTGATGGCCTGTGATGACAAT 156237 Query 69192 AAGGTGTACGGCTATGACGGAGACGAGCTGCATGTGGTGGCTAACTGTCTGGA-TCAGAT 69250 | |||| |||||| ||||| ||||||||| | |||||| | || || || ||| Sbjct 156238 CGTTTTTACGCCTATGATGGAGAGGAGCTGCATCTTGTGGCTTCAAGCCTAGAGTCTGAT 156297 Query 69251 GGGGGAAGAAGGAATAGCCTATCCTGCATTCCAGAGCTATTATCATGGGGAGGCCTTCAA 69310 ||||||| | ||| |||| |||||| ||| | |||||||||||||| Sbjct 156298 ----------GGAATAGAGTTTCCAGCATCAAAGAGCTTTTACAAGGGGGAGGCCTTCAA 156347 Query 69311 ACATATG 69317 | | ||| Sbjct 156348 AGACATG 156354 Score = 87.8 bits (96), Expect = 1e-12 Identities = 101/135 (75%), Gaps = 1/135 (1%) Strand=Plus/Plus Query 69317 GACCAAGGAGGACTGGGAGAAGGTGAGGCAGAGCCCTGCGGGAAAAAGGTTGGATGAGGA 69376 ||| ||||||||||||| |||||||| | |||||| ||| | |||||||| | || Sbjct 156457 GACTAAGGAGGACTGGGCTGAGGTGAGGAAAGGCCCTGTGGGCAGGAGGTTGGACCAAGA 156516 Query 69377 GCATCATAAACTGGTGGTGTCTCAAAAATCTGCACTGCTGAGGAATCTCAGAATCAGCAG 69436 |||||| ||| ||||| | ||||| ||| |||| ||||||||||||| ||| Sbjct 156517 GCATCAGAAATTGGTGAAAGCAACTAAATCCAGACTCCTGAAGAATCTCAGAATCGGCAA 156576 Query 69437 ACA-AAATAGAGGTA 69450 | | ||| ||||||| Sbjct 156577 AGAGAAACAGAGGTA 156591 >seq1310 Length=240470 Score = 147 bits (162), Expect = 2e-30 Identities = 137/174 (79%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 27208 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 27267 || || || | |||||| |||||||| |||||||| | |||||||||||||| || || Sbjct 118499 AGTCCTGTAATGTGAGCGATCATGTAGGTGAGGAGCGCATAGCTGGCGATGTTGAACGGC 118440 Query 27268 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTT 27327 || || || ||||| || ||||| | |||||| ||||||||||| ||||| || || | Sbjct 118439 ACTCCCAGACCCATATCACCCGAGCGCTGGTACAGCTGACACGACAGCTCACCGTCACAC 118380 Query 27328 ACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCT 27381 ||||| ||||| || | |||||||| || || |||||||||||| || |||| Sbjct 118379 ACGTAGAACTGGCAGAGAGCGTGGCAGGGCGGCAGAGCCATGAGGGGCAGGTCT 118326 Score = 125 bits (138), Expect = 5e-24 Identities = 146/194 (75%), Gaps = 10/194 (5%) Strand=Plus/Minus Query 27489 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTC 27548 ||||| |||||||||| || || |||||||| ||||| |||||||| || |||||||| Sbjct 116834 CATGTTTTTGTACTCTGCACCAAAGTGCCTCCACTGGAAGCCGTACACAGGCCCCAGGTC 116775 Query 27549 TCCCTCTTCCCTGTGCTC---GAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGC 27605 ||||| || | |||| ||| || |||||||| ||||| | |||||||||||| Sbjct 116774 GCCCTCCTCTC---GCTCTGTGAACCCGAGGTTGTCCAAGAAGTCCCGGGAACCGTTGGC 116718 Query 27606 GTCCCAGATCTTTACCCCCTTCTCGGAGAGCT-CTTTGGAGTTTGTGGACCCTCTGA--- 27661 |||||||| || || || ||||| || || | ||||| | || || ||||| ||| Sbjct 116717 ATCCCAGATTTTCACTCCTTTCTCTGACAGTTCCTTTGCATTTGTTGAACCCTGTGATGT 116658 Query 27662 CGAACCACAGCAGC 27675 |||| ||| |||| Sbjct 116657 AGAACAACATCAGC 116644 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369480999399158