Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stegastes_20partitus_20[refseq_20GCF_5F000690725.1_202014-05-13] 5,818 sequences; 800,491,834 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq210 149 2e-30 seq1721 140 8e-28 >seq210 Length=679747 Score = 149 bits (164), Expect = 2e-30 Identities = 159/208 (76%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || ||||| || ||||| || || || ||||| || |||||||| || ||| Sbjct 555764 CAGATCTTTGTGAAGACCCTCACCGGCAAGACCATCACACTGGAGGTGGA--GCCCAGCG 555821 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 |||| ||||||||||||||| || || ||||||||||| || |||||||| ||||||| Sbjct 555822 ACACTATCGAGAACGTCAAAGCTAAAATCCAGGACAAAGAGGGGATCCCTCCTGACCAGC 555881 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| ||||| || ||||| |||||||| | ||||| | || || ||| Sbjct 555882 AGAGGCTGATCTTTGCCGGTAAGCAGCTGGAAGATGGTCGCACTCTCTCTGACTACAACA 555941 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| ||||| || || || || || || Sbjct 555942 TCCAGAAAGAGTCCACCCTCCACCTGGT 555969 Score = 140 bits (154), Expect = 8e-28 Identities = 157/208 (75%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || ||||| || | || || || || |||||||| |||||||| || ||| Sbjct 555536 CAGATCTTTGTGAAGACCTTGACTGGTAAGACCATCACCCTGGAGGTGGA--GCCCAGCG 555593 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| ||||| || ||| |||||| ||||||||||| || |||||||| ||||||| Sbjct 555594 ACACCATAGAGAATGTGAAAGCAAAGATCCAGGACAAAGAGGGGATCCCTCCTGACCAGC 555653 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || || || || || || ||||| |||||||| | || || | || || ||| Sbjct 555654 AGAGGCTGATATTTGCTGGTAAGCAGCTGGAAGATGGTCGCACCCTCTCTGACTACAACA 555713 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| ||||| || || || |||||||| Sbjct 555714 TCCAGAAAGAGTCCACCCTCCATCTTGT 555741 >seq1721 Length=144067 Score = 140 bits (154), Expect = 8e-28 Identities = 157/208 (75%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--G 177981 || || || |||||||| ||||| || || || |||||||||||||| | ||| || | Sbjct 117931 CAGATCTTTGTGAAAACCCTCACTGGCAAGACCATCACCCTCGAGGTCG--AGCCCAGTG 117988 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||| ||||| || || |||||||| ||||| || || || ||||||| Sbjct 117989 ACACCATCGAGAATGTCAAGGCTAAAATCCAGGACAAGGAAGGCATTCCCCCTGACCAGC 118048 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | | |||||||| || || ||||| |||||||| | || || |||| || ||| Sbjct 118049 AGAGGTTGATCTTCGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCCGACTACAACA 118108 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| || || || || || || ||||| Sbjct 118109 TCCAGAAGGAGTCCACCCTCCACCTTGT 118136 Score = 131 bits (144), Expect = 4e-25 Identities = 155/208 (75%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || ||||| || || ||||| || || || |||||||| ||||| || || ||| Sbjct 118159 CAGATCTTCGTCAAGACCCTCACTGGCAAGACCATCACCCTTGAGGTCGA--GCCCAGTG 118216 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| ||||| ||||| ||||| || ||||| || || || || || ||||||| Sbjct 118217 ACACCATTGAGAATGTCAAGGCCAAGATCCAAGACAAGGAGGGCATTCCCCCTGACCAGC 118276 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | |||||||| || || || ||||| || ||||| | || || | || || ||| Sbjct 118277 AGAGGCTTATCTTTGCTGGCAAGCAGCTGGAGGATGGCCGCACCCTCTCTGACTACAACA 118336 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 ||||||||||||| || || || ||||| Sbjct 118337 TCCAAAAAGAATCCACCCTCCACCTTGT 118364 Score = 131 bits (144), Expect = 4e-25 Identities = 155/208 (75%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || ||||| || || ||||| ||||| || |||||||| ||||| || || ||| Sbjct 118387 CAGATCTTCGTCAAGACCCTCACTGGAAAGACCATCACCCTGGAGGTTGA--GCCCAGCG 118444 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||| ||||| ||||| || ||||| |||||||| || || ||||||| Sbjct 118445 ACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAGGAAGGAATTCCCCCTGACCAGC 118504 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | | |||||||| || || ||||| || ||||| | || || | || || ||| Sbjct 118505 AGAGGTTGATCTTCGCTGGCAAGCAGCTGGAGGATGGCCGCACCCTCTCTGACTACAACA 118564 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| || || || || || || ||||| Sbjct 118565 TCCAGAAGGAGTCCACTCTCCACCTTGT 118592 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203641470114692