Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Takifugu_20flavidus_20[genbank_20GCA_5F000400755.1_202013-05-30] 34,332 sequences; 378,032,400 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq81 145 8e-30 seq1349 113 5e-20 seq1534 111 2e-19 seq5956 96.9 4e-15 >seq81 Length=187384 Score = 145 bits (160), Expect = 8e-30 Identities = 171/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || |||||||| || || ||||| |||||||| | || || || ||| | Sbjct 173176 ATGCAGATCTTTGTAAAAACCCTGACTGGCAAGACCATCACTCTTGAGGTGGAGCCCAGC 173235 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| | |||| || || | ||||| || ||||| ||| | || || Sbjct 173236 GACACCATTGAGAACG-TGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTGATCA 173294 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | || |||| || ||||| |||||||| || | ||||||||| ||||||||| Sbjct 173295 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCCGACTACAA 173354 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||||| |||| || || || || |||| ||||||| ||| Sbjct 173355 CATCCAGAAGGAGTCCACCCTCCACCTTGTCCTGCGTCTGAGGGGGGGC 173403 Score = 145 bits (160), Expect = 8e-30 Identities = 171/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || |||||||| || || ||||| |||||||| | || || || ||| | Sbjct 173404 ATGCAGATCTTTGTAAAAACCCTGACTGGCAAGACCATCACTCTTGAGGTGGAGCCCAGC 173463 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| | |||| || || | ||||| || ||||| ||| | || || Sbjct 173464 GACACCATTGAGAACG-TGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTGATCA 173522 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | || |||| || ||||| |||||||| || | ||||||||| ||||||||| Sbjct 173523 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCCGACTACAA 173582 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||||| |||| || || || || |||| ||||||| ||| Sbjct 173583 CATCCAGAAGGAGTCCACCCTCCACCTTGTCCTGCGTCTGAGGGGGGGC 173631 Score = 143 bits (158), Expect = 3e-29 Identities = 170/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || |||||||| || || ||||| |||||||| | || || || ||| | Sbjct 173632 ATGCAGATCTTTGTAAAAACCCTGACTGGCAAGACCATCACTCTTGAGGTGGAGCCCAGC 173691 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| | |||| || || | ||||| || ||||| ||| | || || Sbjct 173692 GACACCATTGAGAACG-TGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTGATCA 173750 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | || |||| || ||||| |||||||| || | ||||||||| ||||||||| Sbjct 173751 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCCGACTACAA 173810 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||||| |||| || || || || |||| ||||||| || Sbjct 173811 CATCCAGAAGGAGTCCACCCTCCACCTTGTCCTGCGTCTGAGGGGTGG 173858 Score = 138 bits (152), Expect = 1e-27 Identities = 169/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || || |||||||| || || ||||| |||||||| | || || || || Sbjct 172945 AACATGCAGATCTTTGTAAAAACCCTGACTGGCAAGACCATCACTCTTGAGGTGGAGCCC 173004 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | |||| | | | | | |||| || || | ||||| || ||||| ||| | || Sbjct 173005 AGTGACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTGAT 173064 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| | || |||| || ||||| |||||||| || | ||||||||| ||||||| Sbjct 173065 CAGCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCCGACTAC 173124 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||||||| |||| || || || || |||| ||||||| ||| Sbjct 173125 AACATCCAGAAGGAGTCCACCCTCCACCTTGTCCTGCGTCTGAGGGGGGGC 173175 >seq1349 Length=1030505 Score = 113 bits (124), Expect = 5e-20 Identities = 159/222 (72%), Gaps = 6/222 (3%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| ||||| || || || || || | ||| ||||||| | | || ||| ||| Sbjct 331457 ATGCAGATATTTGTGAAGACCCTGACTGACAAGACCATCAGTCTGCATGTGGAACCCAAT 331398 Query 40750 GACAGC---GTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 |||||| ||| | | |||||| || || | || || ||||| ||||| | || Sbjct 331397 GACAGCATTGTGAATA---TCAAGGTCAAGATCCATGATAAGGAGGGGATCCCTCCTGAT 331341 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| || ||||||| || ||||| |||||| | |||| | ||||||| |||||| Sbjct 331340 CAGCAGCGTCTCATCTTTGCTGGCAAGCAGCTGCAGGACGGCCACACCCTCTCTGACTAC 331281 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTG 40908 ||||||||||||||| ||| || || || ||| | || ||| Sbjct 331280 AACATCCAGAAGGAGTTCACCCTCCACCTTGTGCTCCGTTTG 331239 Score = 96.9 bits (106), Expect = 4e-15 Identities = 156/223 (70%), Gaps = 6/223 (3%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| ||||| || || || || || ||||| ||||||| | | || ||| ||| Sbjct 331685 ATGCAGATATTTGTGAAGACCCTGACTGGCAAGACCATCAGTCTGAATGTGGAACCCAAT 331626 Query 40750 GACAGC---GTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 |||||| ||| | | |||||| || || | || || ||||| ||||| | || Sbjct 331625 GACAGCATTGTGAATA---TCAAGGTCAAGATCCATGATAAGGAGGGGATCCCTCCTGAT 331569 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| | || ||||| || || || ||||| || || | | || ||||| | |||| Sbjct 331568 CAGCAGTGTCTGATCTATGCTGGTAAGCAGCTTGAGGATGGGTGCGCCCTCTCCACCTAC 331509 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGA 40909 |||||||||| | || |||| || || || ||| | || |||| Sbjct 331508 AACATCCAGATGAAGTCCACCCTCCACCTTGTGCTCCGTTTGA 331466 Score = 89.7 bits (98), Expect = 5e-13 Identities = 96/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842 || || ||||| ||||| | |||||||| | || ||||| || || || ||||| || Sbjct 331820 GATAAGGAGGGGATCCCTCCTGACCAGCAGTGTCTGATCTATGCTGGTAAGCAGCTTGAG 331761 Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902 |||| | || ||||| |||||||||||||||||||| |||| || || || ||| | Sbjct 331760 GACGGGTGCTCCCTCTCTGACTACAACATCCAGAAGGAATCCACCCTCCACCTTGTGCTC 331701 Query 40903 CGCTTGA 40909 || |||| Sbjct 331700 CGTTTGA 331694 >seq1534 Length=15379 Score = 111 bits (122), Expect = 2e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 117032 GGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCC 117091 || |||||| |||| ||||| || ||||| ||||| | ||||| || || || || Sbjct 8802 GGAGAGCGCGTGGTAGCCTTTGCTGCCGTGGAGGGTATTTTCTTCTCTGGGTCCTTTGCT 8743 Query 117092 GCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTC 117151 |||| || ||||| |||||| | ||||| |||||||||||||| ||| |||||||||| Sbjct 8742 TCCATCTTCTGGCTGAAGAAAAGGGGCCTGATGCCCGGCCTGACCTTCTCCAACGAGCTC 8683 Query 117152 ATCTCCAGGGACGAGG 117167 ||| ||| ||||||| Sbjct 8682 ATCAGCAGAGACGAGG 8667 Score = 96.9 bits (106), Expect = 4e-15 Identities = 79/96 (82%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 116800 TCTGGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTT 116859 || ||| ||||||||| | |||||||||||||| | ||||| |||| ||||| || || Sbjct 11029 TCAGGTGGAGCGTTTCACCCAGGAGGTGCAGGTCACGGAGGCCAGGTGTTTCTATGGGTT 10970 Query 116860 TCAGATCGCCATGGAGAACGTGCACTCGGAAATGTA 116895 |||||||||||||||||| | ||||| || ||||| Sbjct 10969 CCAGATCGCCATGGAGAACATCCACTCTGAGATGTA 10934 Score = 91.5 bits (100), Expect = 2e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 || || |||||| ||||||||||| || || || || ||||| || | |||| |||| Sbjct 11448 GAACCACTGCTGAAGGAGAACCCCCGTCGCTTTGTCATCTTCCCTATCAAGTACCAGGAC 11389 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGT 116688 || |||| |||||||| ||||| ||||| || |||||||||| || ||||| Sbjct 11388 ATCTGGCAGATGTACAAGAAGGCAGAGGCATCATTCTGGACCGCAGAAGAGGT 11336 >seq5956 Length=703 Score = 96.9 bits (106), Expect = 4e-15 Identities = 79/96 (82%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 116800 TCTGGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTT 116859 || ||| ||||||||| | |||||||||||||| | ||||| |||| ||||| || || Sbjct 491 TCAGGTGGAGCGTTTCACCCAGGAGGTGCAGGTCACGGAGGCCAGGTGTTTCTATGGGTT 550 Query 116860 TCAGATCGCCATGGAGAACGTGCACTCGGAAATGTA 116895 |||||||||||||||||| | ||||| || ||||| Sbjct 551 CCAGATCGCCATGGAGAACATCCACTCTGAGATGTA 586 Score = 91.5 bits (100), Expect = 2e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 || || |||||| ||||||||||| || || || || ||||| || | |||| |||| Sbjct 72 GAACCACTGCTGAAGGAGAACCCCCGTCGCTTTGTCATCTTCCCTATCAAGTACCAGGAC 131 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGT 116688 || |||| |||||||| ||||| ||||| || |||||||||| || ||||| Sbjct 132 ATCTGGCAGATGTACAAGAAGGCAGAGGCATCATTCTGGACCGCAGAAGAGGT 184 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 514998093680320