Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Takifugu_20flavidus_20[genbank_20GCA_5F000400755.1_202013-05-30] 34,332 sequences; 378,032,400 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq854 540 1e-148 seq681 111 2e-19 seq1534 93.3 5e-14 >seq854 Length=240782 Score = 540 bits (598), Expect = 1e-148 Identities = 1071/1579 (68%), Gaps = 18/1579 (1%) Strand=Plus/Plus Query 62683 CGTAATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATG 62742 |||| || ||||| || ||||||| | || ||| || ||||| ||||| || || | Sbjct 74972 CGTAGTAGATGGTCTCGAAGATCTGGGTGTTCAGAAGCTGAGCTTCGGGGCTTTCGAACG 75031 Query 62743 GATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTAT 62802 | ||| | ||| || || ||||| || || || || ||||| || || || || || | Sbjct 75032 GGTAACGCATGAGGATGAATGCGTCGGCCAAACCCTGGACACCGATTCCTATTGGCCTGT 75091 Query 62803 GTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTAT 62862 | | ||| || || | |||||||| || | ||||| |||||||||||||| || || | Sbjct 75092 GGCGCTTGTTGGACTTCTCAGCTTCGGGCACTGGATAGTAATTAATATCTATGATCTTGT 75151 Query 62863 TGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA---TCGCC 62919 | | ||| |||||| ||| ||| |||| | ||||| |||| ||||| ||| Sbjct 75152 TCAAGTTTTTGACAACTACCTTGGTCACAGCAGCTAGTTTTTGAAAGTCAAAAGTCCGCT 75211 Query 62920 CATCTATTACAAACATGTTCAATGCAACAGATGCCAGATTACACACGGCTACCTCATTAG 62979 || | | || ||||||| | ||| || || ||||||||||| || |||||||| | | Sbjct 75212 CAGCGGTGACGTACATGTTGAGTGCGACGGAGGCCAGATTACAAACNGCTACCTC-GTCG 75270 Query 62980 CATC-CGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTT 63038 | | | |||| | || || ||||| ||||| || | |||||| || || | ||| Sbjct 75271 CTGCTGGTGTATTCCACAATTTCTGTGCATAGATTGCTGCTCTTGATGGTGCCCAGATTC 75330 Query 63039 TGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCA 63098 || || || ||||| | || || ||||| || || || ||| ||||||| || |||||| Sbjct 75331 TGCTGGTTGCTCTTCCTATTGCAGGCATCTTTGTAGAGCATGTATGGAGTGCCGGTTTCA 75390 Query 63099 ATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTC 63158 |||| || ||||| || || | ||| || | ||||| | | | ||| | Sbjct 75391 GTCTGGGACTCTATGATGGCATGCCAAACCTGCTGGGCCTTCACCACACGCTTGACGCGG 75450 Query 63159 CTTTCTCTTTCGTATAGAGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAAT 63218 | |||| | |||||| || || | || ||||| || ||||| | || || Sbjct 75451 CCTTCTTTCTCGTATTTGGTGTAGAGCTTCTCAAACTCCTCCCCCCAGCACTCGTTCAGC 75510 Query 63219 CTAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATA 63278 | |||||||| || |||||||| | ||||| || || | || ||| | | ||| Sbjct 75511 CCGGGACATTCGTCTGGACACATTAGAGACCAGTCCTGGTTACTCTCCACCCTCTCCATG 75570 Query 63279 AAGAGATCAGGAATCCAAAGAGC-TATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCC 63337 || | ||||| ||||| | ||| || ||| || ||||| | ||| || ||||| ||||| Sbjct 75571 AACAAGTCAGGGATCCACATAGCGTAGAAA-AGGTCTCTGGCTCTCTGCTCCTCTTTTCC 75629 Query 63338 TGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATAT 63397 || ||||| || | || ||||| | | ||||| |||||||| ||||||| ||| || Sbjct 75630 AGTGTTCTTCTTCAACTCCAGGAAGTCAAATATATCGGAATGCCAGGGTTCCAGGTACAT 75689 Query 63398 GGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATA 63457 ||| | | | ||||||| |||||||| ||||| || | || | |||||||| || || Sbjct 75690 GGCGAAAGCCCCAGGCCTCTTGTTTCCACCCTGGTCCACATAGCGTGCGGTGTTGTTGTA 75749 Query 63458 AACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCC 63517 |||||||| ||| || | || || || || | |||||||| || | ||| || | ||| Sbjct 75750 AACTCTCAGCATGGGGACAAGCCCATTGGAGTTGCCATTGGTGCCAGCGATGTAACTTCC 75809 Query 63518 ACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGC 63577 | | | || || | | | ||| ||||| || ||| || ||||| | || Sbjct 75810 CGTAGATCTGATGCAGCTGACGGCCACACCGATTCCTCCAGCCGACTTGGAGATGAGCGC 75869 Query 63578 GCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAA 63637 ||| |||| | ||||||||| ||||| || ||||| ||||| ||||| || || || Sbjct 75870 GCACTGTTTCAGCGTGTCATAAATGCCCTCGATGCTGTCATCCTTCATGGCGAGCAGGAA 75929 Query 63638 ACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGT 63697 ||||| |||| || | | | || || |||||||| | || || || || || || Sbjct 75930 GCAGCTGGACAGCTGTGGCCTGTTGGTACCTGCATTAAAGAGTGTCGGGGAGGCATGGGT 75989 Query 63698 AAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATG 63757 ||||| || || || || || ||||| || ||||| |||| || ||||| |||||| Sbjct 75990 GAACCACTTCTCTGACAGCAGGTTGTAGGTTTCAATCGCTGCATCAATATCTGTTTGATG 76049 Query 63758 AATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTAT 63817 || || || | || | ||| | ||||||||| |||| || | | |||| ||| || Sbjct 76050 GATCCCCACAGAAACCCTCATGAGCATGTGCTGCGGTCGCTCGGCCACTTTGCCGTTGAT 76109 Query 63818 TTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCG 63877 ||||||| |||||| |||| |||||||| || || | ||||| ||||| || || Sbjct 76110 CTTCAACAGGTAGGACCGCTCCAGGGTTTTAAAGCCGAAGAAATTGTACGAAAAATCGCG 76169 Query 63878 TTCGTAAATAATAACCGAATTGAGCTTATCCTTATATTTGTTAACTATATCCATGGTAAT 63937 || || || || |||| || || || || | | | || || || | || | Sbjct 76170 GTCATATATTATGGCCGAGTTCAGGCGGTCTTTGTTCTGGAGGACGATGTCAAGCGT-CT 76228 Query 63938 ACTT-GAAATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCT 63996 ||| || | || ||||| || | |||| || || | |||||| | | |||| Sbjct 76229 CCTTGGAGACCATGGGAGAGTGACGCTTATTTAGTGGGTTTATGTAGTTGTACAGGTCCT 76288 Query 63997 CCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATATGGCTATTCTGG 64056 ||||||| ||||| || | || ||||| |||||||| || ||||| | ||| || | | Sbjct 76289 CCATCACGTCACTGAACACCTTCTTTGTCTCCTTGTGCAGGTTTGAGACGGCGATCCGTG 76348 Query 64057 CGGCTAGAATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCA 64116 | || || ||||| || || || |||| || || ||| || | | ||| Sbjct 76349 CAGCGAGGATGGCGTAGTCAGGGTGTTTGGTGGTCAGAGTAGCAGAGA---------CCA 76399 Query 64117 GAGTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGAATAACCTTCATAGCTA 64176 ||||| | || || || || |||||||| || | || || || |||||||| | | Sbjct 76400 AGGTGTCGAGCTCCACNGTGGTGACTCCATTGTACAAACCCTGGATCACCTTCATGGTAA 76459 Query 64177 TTTTAATAGGATCTATATGATCCGTGTTTAAGCCATAGCACAATTTTCTAATACGAGACG 64236 | | || || | | || | ||||| ||| ||||||| || || ||||| | Sbjct 76460 TCTGGGCTGGGTCCACAAAGTCAGCGTTTAGGCCGTAGCACAGCTTCTGGATGCGAGAGG 76519 Query 64237 TGATTTTATCAAACATGAC 64255 |||||||||| |||||||| Sbjct 76520 TGATTTTATCGAACATGAC 76538 Score = 114 bits (126), Expect = 2e-20 Identities = 128/171 (75%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 62113 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 62172 |||| ||||| || ||||| || ||||||||| ||| | || ||||| || ||||| | Sbjct 74316 TCCAGCCGTAGAAGTGCATGCTGGTTAGTTTGCCATAGTTGGGCTCTGCGATGTGGATGT 74375 Query 62173 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 62232 ||| ||| || || || ||||||||||| || | ||| || ||||| || ||||| || | Sbjct 74376 TCAGAGACTGGCTCTGGTCGATGAAGGCGCCGCGGTCGGCTGCCATCTTGATGATGGTTT 74435 Query 62233 TTTGTGCAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 62283 | || | |||||||| | ||||||||| | |||| | || | ||||| Sbjct 74436 TCTGGGAGATTTCCCACACAGTTTTATACAGCTGCTTCACGTCGTTTGGAA 74486 >seq681 Length=269650 Score = 111 bits (122), Expect = 2e-19 Identities = 124/166 (75%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 64006 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATATGGCTATTCTGGCGGCTAGAA 64065 ||||||| | ||| || || || ||||||||||| || | ||| || | || || || | Sbjct 108804 CACTAAAGACTTTCTTGGTCTCTTTGTGTAGATTGGACACGGCGATCCGTGCAGCCAGGA 108745 Query 64066 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 64125 |||||||||| |||| || || || ||||||||| | || |||||||||||||||| Sbjct 108744 TGGCATAATCAGGATATTTGGTGGTGAGAGTGGCTGCCGTCTCTGCTGCCAGAGTGTCCA 108685 Query 64126 ATTCTACCGTTGTTACTCCATTATATATTCCTTGAATAACCTTCAT 64171 || || || || |||||| | || | || || || |||||||| Sbjct 108684 GCTCCACTGTGGTGACTCCACTGTACAGGCCCTGGATCACCTTCAT 108639 Score = 107 bits (118), Expect = 2e-18 Identities = 112/147 (76%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 63266 CACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATG 63325 |||||||||||||||||| || || ||||| | ||| | || |||||||| | || || Sbjct 110136 CACTCGTTTCATAAAGAGGTCTGGGATCCACAAAGCGAAGAACAGATCTCTGGCCCTCTG 110077 Query 63326 TTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 63385 ||||| || || || |||||||| || || |||||||| | | ||| ||||||||||| Sbjct 110076 CTCCTCTTTGCCAGTGTTCTTTTTCAGCTCCAGGAACGCAAACACATCGGAATGCCACGG 110017 Query 63386 TTCCAAGTATATGGCCATAACTCCAGG 63412 |||| ||| | || | ||||||| Sbjct 110016 CTCCAGGTACACAGCAAAGGCTCCAGG 109990 >seq1534 Length=15379 Score = 93.3 bits (102), Expect = 5e-14 Identities = 93/121 (77%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||||||||| || || | ||||| || || || || |||||||| ||||| | || | Sbjct 8667 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATCAGGCCCCTTTTCT 8726 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | ||||| || |||||||| || || || || ||||| || || || || |||||||||| Sbjct 8727 TCAGCCAGAAGATGGAAGCAAAGGACCCAGAGAAGAAAATACCCTCCACGGCAGCAAAGG 8786 Query 33724 C 33724 | Sbjct 8787 C 8787 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629547313776960