Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Takifugu_20flavidus_20[genbank_20GCA_5F000400755.1_202013-05-30] 34,332 sequences; 378,032,400 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq854 547 9e-151 seq681 123 3e-23 >seq854 Length=240782 Score = 547 bits (606), Expect = 9e-151 Identities = 1090/1603 (68%), Gaps = 24/1603 (1%) Strand=Plus/Plus Query 71434 GCTCCATAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCA 71493 ||| | || || ||||| ||||| |||| | || ||| || ||||| ||||| || Sbjct 74968 GCTGCGTAGTAGATGGTCTCGAAGATCTGGGTGTTCAGAAGCTGAGCTTCGGGGCTTTCG 75027 Query 71494 AATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGT 71553 || || ||| | ||| || || ||||| || || || || || || || || || || Sbjct 75028 AACGGGTAACGCATGAGGATGAATGCGTCGGCCAAACCCTGGACACCGATTCCTATTGGC 75087 Query 71554 CTGTGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATT 71613 ||||| | ||| || || | |||||||| || | ||||| |||||||||||||| || Sbjct 75088 CTGTGGCGCTTGTTGGACTTCTCAGCTTCGGGCACTGGATAGTAATTAATATCTATGATC 75147 Query 71614 TTATTGAGATTTCTGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCTC 71673 || || | ||| |||| | ||| ||| |||| | |||||| |||| ||||| || Sbjct 75148 TTGTTCAAGTTTTTGACAACTACCTTGGTCACAGCAGCTAGTTTTTGAAAGTCAAAAGTC 75207 Query 71674 C---CATCTATTACAAACACGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCA 71730 | || | | || ||| ||| | || || || |||||||||||||| |||||||| Sbjct 75208 CGCTCAGCGGTGACGTACATGTTGAGTGCGACGGAGGCCAGATTACAAACNGCTACCTC- 75266 Query 71731 TTAGCATC-GGCATATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAA 71789 | || | || |||| | |||||| ||||| ||||| || | ||||||||| || | Sbjct 75267 GTCGCTGCTGGTGTATTCCACAATTTCTGTGCATAGATTGCTGCTCTTGATGGTGCCCAG 75326 Query 71790 ATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGT 71849 ||| || || || ||||| | || || ||||| || || || || | ||||| || || Sbjct 75327 ATTCTGCTGGTTGCTCTTCCTATTGCAGGCATCTTTGTAGAGCATGTATGGAGTGCCGGT 75386 Query 71850 TTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATATTCTTGTA 71909 |||| |||| || ||||| || || | ||| || | ||||| | | | |||| Sbjct 75387 TTCAGTCTGGGACTCTATGATGGCATGCCAAACCTGCTGGGCCTTCACCACACGCTTGAC 75446 Query 71910 TCTCTTTTCTCTTTCGTATT--GTGTATATAATCGTTCGAACTCGTCTCCCCAAGCA-TT 71966 | |||| | ||||||| ||||| | || || ||||| || |||| |||| | Sbjct 75447 GCGGCCTTCTTTCTCGTATTTGGTGTAGAGCTTC--TCAAACTCCTC-CCCCCAGCACTC 75503 Query 71967 GTCTAATCCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCG 72026 || | || |||||||| | |||||||| | ||||| || | | | || | Sbjct 75504 GTTCAGCCCGGGACATTCGTCTGGACACATTAGAGACCAGTCCTGGTTACTCTCCACCCT 75563 Query 72027 TTTCATAAAGAGATCAGGAATCCAAAGAGC-TATAAATAGATCTCTGGTTCTATGCTCCT 72085 | ||| || | ||||| ||||| | ||| || ||| || ||||||| ||| ||||||| Sbjct 75564 CTCCATGAACAAGTCAGGGATCCACATAGCGTAGAAA-AGGTCTCTGGCTCTCTGCTCCT 75622 Query 72086 CGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCA 72145 | ||||| || ||||| || | || ||||| | | ||||| |||||||| ||||||| Sbjct 75623 CTTTTCCAGTGTTCTTCTTCAACTCCAGGAAGTCAAATATATCGGAATGCCAGGGTTCCA 75682 Query 72146 AGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGT 72205 ||| ||||| | | | || |||| |||||||| ||||| || | || | ||||||| Sbjct 75683 GGTACATGGCGAAAGCCCCAGGCCTCTTGTTTCCACCCTGGTCCACATAGCGTGCGGTGT 75742 Query 72206 TATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATAT 72265 | || |||||||||| ||| || | || |||||||| |||||||| || | ||| | Sbjct 75743 TGTTGTAAACTCTCAGCATGGGGACAAGCCCATTGGAGTTGCCATTGGTGCCAGCGATGT 75802 Query 72266 AGCTTCCACTGGCACGAATATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGA 72325 | ||||| | | | || ||| | | | ||| ||||| || ||| || |||| Sbjct 75803 AACTTCCCGTAGATCTGATGCAGCTGACGGCCACACCGATTCCTCCAGCCGACTTGGAGA 75862 Query 72326 TTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAA 72385 | | ||||| |||| | ||| ||||| |||||||| || || |||||| ||||| | Sbjct 75863 TGAGCGCGCACTGTTTCAGCGTGTCATAAATGCCCTCGATGCTGTCATCCTTCATGGCGA 75922 Query 72386 GTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAG 72445 | || || ||||| |||| || | | | || || |||||||| | || || || | Sbjct 75923 GCAGGAAGCAGCTGGACAGCTGTGGCCTGTTGGTACCTGCATTAAAGAGTGTCGGGGAGG 75982 Query 72446 CGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCC 72505 | || || ||||| || || ||||| || ||||| || ||||| |||| || ||||| Sbjct 75983 CATGGGTGAACCACTTCTCTGACAGCAGGTTGTAGGTTTCAATCGCTGCATCAATATCTG 76042 Query 72506 ATTGATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGT 72565 |||||| || || || | || | ||| | ||| ||||| |||| || | | ||| Sbjct 76043 TTTGATGGATCCCCACAGAAACCCTCATGAGCATGTGCTGCGGTCGCTCGGCCACTTTGC 76102 Query 72566 TATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAA 72625 || || ||||||| |||||| |||| |||||||| || || | ||||| |||| Sbjct 76103 CGTTGATCTTCAACAGGTAGGACCGCTCCAGGGTTTTAAAGCCGAAGAAATTGTACGAAA 76162 Query 72626 AGTCTCGTTCGTAAATAATAACCGAATTGAGTTTATCCTTATATTTGTTAACTATATCCA 72685 | || || || || || || |||| || || || || | | | || || || | Sbjct 76163 AATCGCGGTCATATATTATGGCCGAGTTCAGGCGGTCTTTGTTCTGGAGGACGATGTCAA 76222 Query 72686 TGGTGATACTT-GAAATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAAT 72744 || | ||| || | || ||||| || | |||| || || | |||||| | Sbjct 76223 GCGT-CTCCTTGGAGACCATGGGAGAGTGACGCTTATTTAGTGGGTTTATGTAGTTGTAC 76281 Query 72745 AAATCCTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCT 72804 | ||||||||||| ||||| || | || ||||| |||||||| || ||||| ||||| Sbjct 76282 AGGTCCTCCATCACGTCACTGAACACCTTCTTTGTCTCCTTGTGCAGGTTTGAGACGGCG 76341 Query 72805 ATTCTGGCGGCTAGAATGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCT 72864 || | || || || ||||| || || || |||| || || ||| || | | Sbjct 76342 ATCCGTGCAGCGAGGATGGCGTAGTCAGGGTGTTTGGTGGTCAGAGTAGCAGAGA----- 76396 Query 72865 GCTGCCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTC 72924 ||| ||||| | || || || || |||||||| || | || ||||| |||||| Sbjct 76397 ----CCAAGGTGTCGAGCTCCACNGTGGTGACTCCATTGTACAAACCCTGGATCACCTTC 76452 Query 72925 ATAGCTATTTTAATAGGATCTATATGATCAGTGTTTAAGCCATAACATAATTTTCTAATA 72984 || | || | || || | | |||| ||||| ||| || || | || || Sbjct 76453 ATGGTAATCTGGGCTGGGTCCACAAAGTCAGCGTTTAGGCCGTAGCACAGCTTCTGGATG 76512 Query 72985 CGAGACGTGATTTTATCAAACATAACATTTTCCCGGCATCCAT 73027 ||||| ||||||||||| ||||| || ||| ||| ||||| Sbjct 76513 CGAGAGGTGATTTTATCGAACATGACGCGCTCCTGGCGTCCAT 76555 Score = 114 bits (126), Expect = 2e-20 Identities = 128/171 (75%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 70868 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTAGGATCGGCTATGTGAATAT 70927 |||| ||||| || ||||| || ||||||||| |||| | || || || ||||| || | Sbjct 74316 TCCAGCCGTAGAAGTGCATGCTGGTTAGTTTGCCATAGTTGGGCTCTGCGATGTGGATGT 74375 Query 70928 TCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 70987 ||| ||||| || || ||||||||||| || | ||| || ||||| || ||||| || | Sbjct 74376 TCAGAGACTGGCTCTGGTCGATGAAGGCGCCGCGGTCGGCTGCCATCTTGATGATGGTTT 74435 Query 70988 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 71038 | || | |||||||| | ||||||||| | |||| | || | ||||| Sbjct 74436 TCTGGGAGATTTCCCACACAGTTTTATACAGCTGCTTCACGTCGTTTGGAA 74486 Score = 89.7 bits (98), Expect = 7e-13 Identities = 179/262 (68%), Gaps = 5/262 (2%) Strand=Plus/Plus Query 71049 CTGAATGGATCCACCATCTGCAATAATCCTATTTTTGATCTCTTCATTCCATAATTTTCT 71108 |||||||||||| | || || | | ||||||| || || || ||||| || || Sbjct 74579 CTGAATGGATCCGTTGTGAGCGATGAGCTTATTTTTCATGTCCTCGTTCCACAACCCCCT 74638 Query 71109 CTCGGTTAAAACTCTAAGGAGATGAGGATTAACTACTTGAAATTCTCCAGACAATACTCT 71168 ||| || | || | ||||| ||||| || || | || || || || |||| || || Sbjct 74639 CTCCGTCAGGTCTTTGAGGAGGTGAGGGTTGACAATCTGGAACTCCCCGGACAGGACCCT 74698 Query 71169 ACGAGTGTAAATATTACTGGTATACGGTTCCACTGACTCATTATTTCCCAAAATTTGAGC 71228 || ||||| || || ||||| || | ||| | ||||| || || |||| || || || Sbjct 74699 GCGGGTGTAGATGTTGCTGGTGTAGGCTTCGATAGACTCGTTGTTGCCCAGGATCTGGGC 74758 Query 71229 AGTTGATGCAGTCGGCATAGGTGCCACCAATAGACTATTTCTAAGACCATGTGATCG--G 71286 ||||| || || ||||| || || | | ||||| || || | || ||| | | | Sbjct 74759 GGTTGAGGCGGTGGGCATCGGGGCTAAGAGCAGACTGTTCCTCACGCC--GTGCTTGGCG 74816 Query 71287 ATTTTATCTTTTAG-AGATTCC 71307 ||||| || ||||| || |||| Sbjct 74817 ATTTTTTCCTTTAGCAGCTTCC 74838 >seq681 Length=269650 Score = 123 bits (136), Expect = 3e-23 Identities = 127/166 (77%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 72761 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAA 72820 ||||||| | ||| || || || ||||||||||| || ||||| || | || || || | Sbjct 108804 CACTAAAGACTTTCTTGGTCTCTTTGTGTAGATTGGACACGGCGATCCGTGCAGCCAGGA 108745 Query 72821 TGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCA 72880 |||||||||| |||| || || || ||||||||| | ||||||||||||||||||| Sbjct 108744 TGGCATAATCAGGATATTTGGTGGTGAGAGTGGCTGCCGTCTCTGCTGCCAGAGTGTCCA 108685 Query 72881 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 72926 || || || || |||||| | || | || ||||| |||||||| Sbjct 108684 GCTCCACTGTGGTGACTCCACTGTACAGGCCCTGGATCACCTTCAT 108639 Score = 114 bits (126), Expect = 2e-20 Identities = 102/128 (80%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 72022 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 72081 ||||||||||||||||| || || ||||| | ||| | || |||||||||| || ||| Sbjct 110135 ACTCGTTTCATAAAGAGGTCTGGGATCCACAAAGCGAAGAACAGATCTCTGGCCCTCTGC 110076 Query 72082 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 72141 ||||| || || || |||||||| || || |||||||| | | ||| ||||||||||| Sbjct 110075 TCCTCTTTGCCAGTGTTCTTTTTCAGCTCCAGGAACGCAAACACATCGGAATGCCACGGC 110016 Query 72142 TCCAAGTA 72149 |||| ||| Sbjct 110015 TCCAGGTA 110008 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670851180612320