Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Takifugu_20flavidus_20[genbank_20GCA_5F000400755.1_202013-05-30] 34,332 sequences; 378,032,400 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq854 331 2e-85 seq1534 127 4e-24 seq681 109 1e-18 seq1034 102 2e-16 seq24387 84.2 4e-11 seq5320 84.2 4e-11 >seq854 Length=240782 Score = 331 bits (366), Expect = 2e-85 Identities = 942/1446 (65%), Gaps = 58/1446 (4%) Strand=Plus/Plus Query 244010 GAGCCCTTGTGGACGATGAGCTGGGTGCGCATGTTATCGTTCCACAGGCCCAAGCGCTCC 244069 || || ||||| ||||||||| | ||||| |||||||||| ||| | |||| Sbjct 74586 GATCCGTTGTGAGCGATGAGCTTATTTTTCATGTCCTCGTTCCACAACCCC---CTCTCC 74642 Query 244070 ---AGCGCCTCGACCAGGTGCCTGTTCACCACCTGAAACTCTCCCGACAGCACGCGGCGC 244126 || | | || ||||| ||| || | ||| ||||| || ||||| || | ||| Sbjct 74643 GTCAGGTCTTTGAGGAGGTGAGGGTTGACAATCTGGAACTCCCCGGACAGGACCCTGCGG 74702 Query 244127 TGGTAGAGGTTGCTGCTGAGCGGCTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTG 244186 ||||| ||||||| || | ||||| ||| |||||||||| ||||| || || Sbjct 74703 GTGTAGATGTTGCTGGTGTAGGCTTCGATAGACTCGTTGTTGCCCAGGATCTGGGCGGTT 74762 Query 244187 CTCGCAGTCGGCATGGGCGACACCAGCAGACTGTTCCTCACGCCGTGCCTCTGGATGCGG 244246 || || ||||| || | | |||||||||||||||||||||||| | ||| Sbjct 74763 GAGGCGGTGGGCATCGGGGCTAAGAGCAGACTGTTCCTCACGCCGTGCTTGGCGATTTTT 74822 Query 244247 AGTCTGAGCTCGTTCCAGTCCCACATGCCCGAGAG-GTCCTCGCGTTTGAGGCCCCACAT 244305 | ||| ||||||||| ||| | | | | | ||| || | |||||| Sbjct 74823 TCCTTTAGCAGCTTCCAGTCCAACAGGTCGGTGGGCGTCTTCTC----------CCACAT 74872 Query 244306 GTCAAACTGCAGCAGCCCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTC 244365 ||| |||| || | ||||||||||| ||| ||| |||||||| ||| || ||| Sbjct 74873 GTCGTACTGAAGGATGCCCTTGCTGACCGGGGAGCCTTCGTAGGTTTCGTACGGCCCGA- 74931 Query 244366 GCGCTGGGCCAGCTTACAGCTCTCGTC-----GAGGGCGGCGTAGTAGATGGTCTCGAAG 244420 || |||||| ||||||||||||||||||||| Sbjct 74932 GCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGGGCTGCGTAGTAGATGGTCTCGAAG 74991 Query 244421 ATCATCTTGTTCATGTCGCGGGCCTT-GCCGCAGGTGAAGGGGATGCCCATCATCATGAA 244479 ||| |||||| | || | ||| | || ||| ||| | ||| | ||||| Sbjct 74992 ATCTGGGTGTTCA-GAAGCTGAGCTTCGGGGCTTTCGAACGGGTAACGCATGAGGATGAA 75050 Query 244480 GACGTCGGCCAGTCCCTGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAGCGCAT 244539 ||||||||| ||||| || ||||| || || || ||||| ||||||||||| | Sbjct 75051 TGCGTCGGCCAAACCCTGGACACCGATTCCTATTGGCCTGTGGCGCTTGTTGGACTTCTC 75110 Query 244540 GGCTTCGGGCACGGGGTAAAAGTTGCCGTCGATCACCTTGTTGAGGTTGCGGGTGATCAT 244599 ||||||||||| || || | || || || | |||||| | ||| ||| || Sbjct 75111 AGCTTCGGGCACTGGATAGTAATTAATATCTATGATCTTGTTCAAGTTTT---TGA-CA- 75165 Query 244600 GCGGACGACGTCGGCCAGCAGCTGAAAGTCGT----ACTCGTAGGGATCCTCGGCGATGG 244655 || || | || || |||| | ||| | | || | | ||| ||| || Sbjct 75166 ----ACTACCTTGGTCA-CAGCAGCTAGTTTTTGAAAGTCAAAAGTCCGCTCAGCGGTG- 75219 Query 244656 TGATCCTCACAAACTCGTTGAGGGCGACGCTGGCCAGGTTGCAGACGGCCACCTCCTCCG 244715 || || |||||| |||||| |||||| || || || || ||||| || Sbjct 75220 --------ACGTACATGTTGAGTGCGACGGAGGCCAGATTACAAACNGCTACCTCGTCGC 75271 Query 244716 AGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCT 244775 | ||||||| | ||||| || ||||| || || |||| ||||||||||||||| | || Sbjct 75272 TGCTGGTGTATTCCACAATTTCTGTGCATAGATTGCTGCTCTTGATGGTGCCCAGATTCT 75331 Query 244776 GGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGA 244835 | || ||| ||| |||||||| || |||||||||||| | || ||||| || Sbjct 75332 GCTGGTTGCTCTTCCTATTGCAGGCATCTTTGTAGAGCATGTATGGAGTGCCGGTTTCAG 75391 Query 244836 GCTGGGCGACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGACCGTCCTGCGAGCCTTGC 244895 ||||| | | || | | ||| | | | ||||| ||| | || | | | Sbjct 75392 TCTGGGACTCTATGATGGCATGCCAAACCTGCTGGGCCTTCACCACAC-GCTTGACGCGG 75450 Query 244896 CCT-CTGCCTCGTAGCGGGTGTACAGGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGG 244954 ||| || |||||| |||||| || ||| ||||| |||||| ||||| || Sbjct 75451 CCTTCTTTCTCGTATTTGGTGTAGAGCTTCTCAAACTCCTCCCCCCAGCACTCGTTCAGC 75510 Query 244955 CCGGGGCACGACGCCGGGCACATGAGACTCCACTCGCCGCCGTCCTTGACCCTCTGCATG 245014 ||||| || | || ||||| ||| ||| || | || ||||||| |||| Sbjct 75511 CCGGGACATTCGTCTGGACACATTAGAGACCAGTCCTGGTTACTCTCCACCCTCTCCATG 75570 Query 245015 AAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCA 245074 || | ||| |||||||| | || | ||| ||||| |||| |||||||| || ||| Sbjct 75571 AACAAGTCAGGGATCCACATAGCGTAGAAAAGGTCTCTGGCTCTCTGCTCCTCTTTTCCA 75630 Query 245075 GTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACA 245134 ||||||||| ||| ||||| |||||||| | ||| |||||||| |||| ||| | Sbjct 75631 GTGTTCTTCTTCAACTCCAGGAAGTCAAATATATCGGAATGCCAGGGTTCCAGGTACATG 75690 Query 245135 GCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTGGTCCACCATCCTCTCGAGCG----CGTT 245190 |||| || || |||| |||||| || |||||||||| | | || ||| ||| Sbjct 75691 GCGAAAGCCCCAGGCCTCTTGTTTCCACCCTGGTCCA----CATAGCGTGCGGTGTTGTT 75746 Query 245191 GAAGATGCGCAGGGTAGGCACTATGCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGC 245250 | | | | ||| | || || | || || |||| ||| |||||||| |||||| Sbjct 75747 GTAAACTCTCAGCATGGGGACAAGCCCATTGGAGTTGCCATTGGTGCCAGCGATGTAACT 75806 Query 245251 GCCCTTGCCCCTGAGGTTGCTGATGGACATGCCTAGTCCGCCGGCGTGCTTGGAGATGAG 245310 ||| | |||| | ||||| || || || | ||| || || |||||||||||| Sbjct 75807 TCCCGTAGATCTGATGCAGCTGACGGCCACACCGATTCCTCCAGCCGACTTGGAGATGAG 75866 Query 245311 GGCGCAGCTCTTGATGGTGTCTGCTATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAG 245370 ||||| || | ||||| |||||||| |||||||| ||||||| |||||| Sbjct 75867 CGCGCACTGTTTCAGCGTGTCATAAATGCCCTCGATGCTGTCATCCTTCATGGCGAGCAG 75926 Query 245371 AAAGCAGGAGGACAGCTGGGGCTTGGGGCTGCACGAGTTGAACAGAGTGGGGCTGGCGTG 245430 |||||| ||||||||| ||| || | | | | || || || || ||| ||| || Sbjct 75927 GAAGCAGCTGGACAGCTGTGGCCTGTTGGTACCTGCATTAAAGAGTGTCGGGGAGGCATG 75986 Query 245431 GGTAAA 245436 ||| || Sbjct 75987 GGTGAA 75992 >seq1534 Length=15379 Score = 127 bits (140), Expect = 4e-24 Identities = 106/127 (83%), Gaps = 2/127 (2%) Strand=Plus/Minus Query 42706 TGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCT 42765 ||||||||||| | ||||| ||||| || |||||||| || |||| || |||||||||| Sbjct 8792 TGGTAGCCTTTGCTGCCGTGGAGGGTATTTTCTTCTCTGGGTCCTTTGCTTCCATCTTCT 8733 Query 42766 GGCTCAAGCAGAAGGTGTC-GATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGG 42824 |||| ||| | |||| | | ||||||||| || |||||||| ||||| ||||||||||| Sbjct 8732 GGCTGAAGAA-AAGGGGCCTGATGCCCGGCCTGACCTTCTCCAACGAGCTCATCAGCAGA 8674 Query 42825 GACGAGG 42831 ||||||| Sbjct 8673 GACGAGG 8667 >seq681 Length=269650 Score = 109 bits (120), Expect = 1e-18 Identities = 113/148 (76%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 244097 ACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGATG 244156 ||||||||||||||||| || || | |||| ||||| ||||||| || | ||||||| Sbjct 111500 ACCTGAAACTCTCCCGAGAGAACCCTGCGCGTGTAGATGTTGCTGGTGTAGGCCTCGATG 111441 Query 244157 CTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGCAGA 244216 ||| |||| ||||| ||||| || ||| || || |||||||| | || |||||| Sbjct 111440 GACTCGTTGTTCCCCAGGATCTGGGCGGTGGAGGCTGTGGGCATGGGAGCCAGCAGCAGG 111381 Query 244217 CTGTTCCTCACGCCGTGCCTCTGGATGC 244244 |||||||| ||||| || || ||| || Sbjct 111380 CTGTTCCTGACGCCATGTCTGAGGACGC 111353 Score = 104 bits (114), Expect = 4e-17 Identities = 90/112 (80%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 244705 CACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGT 244764 |||||| || | | ||||||| |||||||| ||||| || || ||| | |||||||| Sbjct 110572 CACCTCATCTTTGCTCGTGTACTCTACAATCTCTGTGCACAGATTGCTGGATTTGATGGT 110513 Query 244765 GCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATG 244816 |||||||| ||| || ||| ||| ||||||||||||||||||||||||| Sbjct 110512 GCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATG 110461 Score = 96.9 bits (106), Expect = 7e-15 Identities = 104/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 245011 CATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGA 245070 ||| |||||||| |||||||| | || ||| || || |||| ||||||||| || Sbjct 110127 CATAAAGAGGTCTGGGATCCACAAAGCGAAGAACAGATCTCTGGCCCTCTGCTCCTCTTT 110068 Query 245071 GCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTA 245130 |||||||||||| ||||||||| || |||| || ||| ||||| ||||||| ||| Sbjct 110067 GCCAGTGTTCTTTTTCAGCTCCAGGAACGCAAACACATCGGAATGCCACGGCTCCAGGTA 110008 Query 245131 GACAGCGAGGGCGCCGGG 245148 ||||| | ||| || || Sbjct 110007 CACAGCAAAGGCTCCAGG 109990 >seq1034 Length=215700 Score = 102 bits (112), Expect = 2e-16 Identities = 101/128 (79%), Gaps = 2/128 (2%) Strand=Plus/Minus Query 42705 CTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTC 42764 ||||| || ||| | || || ||||||||||||||||| ||| | ||||| ||||||| | Sbjct 37402 CTGGTGGCATTTGCAGCAGTGGAGGGCATCTTCTTCTCTGGCTCGTTCGCGTCCATCTAC 37343 Query 42765 TGGCTCAAGCAGAAGGTGTCG-ATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAG 42823 ||||| ||| | |||| | | ||||| || ||||||| || || || ||||||||||| Sbjct 37342 TGGCTGAAGAA-AAGGGGACTCATGCCGGGCCTCACCTATTCTAATGAGCTCATCAGCAG 37284 Query 42824 GGACGAGG 42831 || |||| Sbjct 37283 AGATGAGG 37276 >seq24387 Length=333 Score = 84.2 bits (92), Expect = 4e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 43070 CCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCG 43129 |||||| ||||| |||||||||||||| ||||||| ||||||||||| || |||||| | Sbjct 129 CCCCTTTGACTTCATGGAGAACATCTCTCTGGAGGGAAAGACCAACTTCTTTGAGAAGAG 188 Query 43130 CGTCGCCGACTACCAG 43145 || | ||| |||||| Sbjct 189 GGTGGGCGAGTACCAG 204 >seq5320 Length=369 Score = 84.2 bits (92), Expect = 4e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 43070 CCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCG 43129 |||||| ||||| |||||||||||||| ||||||| ||||||||||| || |||||| | Sbjct 148 CCCCTTTGACTTCATGGAGAACATCTCTCTGGAGGGAAAGACCAACTTCTTTGAGAAGAG 207 Query 43130 CGTCGCCGACTACCAG 43145 || | ||| |||||| Sbjct 208 GGTGGGCGAGTACCAG 223 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 943933936832320