Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Takifugu_20flavidus_20[genbank_20GCA_5F000400755.1_202013-05-30] 34,332 sequences; 378,032,400 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq81 102 9e-17 seq738 96.9 4e-15 seq29872 89.7 6e-13 seq19796 87.8 2e-12 seq2275 86.0 7e-12 seq23301 84.2 2e-11 seq2887 82.4 8e-11 >seq81 Length=187384 Score = 102 bits (112), Expect = 9e-17 Identities = 166/238 (70%), Gaps = 1/238 (0%) Strand=Plus/Minus Query 41972 AATT-TATCGACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATAT 42030 |||| ||| |||| || || | ||||| || | || | ||| |||||| || || | Sbjct 173869 AATTCTATTGACCACCCCTCAGACGCAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGT 173810 Query 42031 TGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCT 42090 |||| || | || || || | || || |||||||| ||||| || || || | ||||| Sbjct 173809 TGTAGTCGGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCT 173750 Query 42091 GGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGC 42150 | || | || | || ||||||||| ||| || || | || | | ||||||| Sbjct 173749 GATCAGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGC 173690 Query 42151 TCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | | ||||| || | |||||||| ||||| || || || ||||||||||| ||||| Sbjct 173689 TGGGCTCCACCTCAAGAGTGATGGTCTTGCCAGTCAGGGTTTTTACAAAGATCTGCAT 173632 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || ||||| || | || || || | || || |||||||| ||||| || Sbjct 173367 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAA 173308 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || || | |||||| || | || | || ||||||||| ||| || || | | Sbjct 173307 GATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTT 173248 Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | | |||||||| | ||||| || | |||||||| ||||| || || || ||||| Sbjct 173247 CTCAATGGTGTCGCTGGGCTCCACCTCAAGAGTGATGGTCTTGCCAGTCAGGGTTTTTAC 173188 Query 42197 AAAGATTTGCAT 42208 |||||| ||||| Sbjct 173187 AAAGATCTGCAT 173176 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || ||||| || | || || || | || || |||||||| ||||| || Sbjct 173595 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAA 173536 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || || | |||||| || | || | || ||||||||| ||| || || | | Sbjct 173535 GATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTT 173476 Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | | |||||||| | ||||| || | |||||||| ||||| || || || ||||| Sbjct 173475 CTCAATGGTGTCGCTGGGCTCCACCTCAAGAGTGATGGTCTTGCCAGTCAGGGTTTTTAC 173416 Query 42197 AAAGATTTGCAT 42208 |||||| ||||| Sbjct 173415 AAAGATCTGCAT 173404 Score = 93.3 bits (102), Expect = 5e-14 Identities = 138/196 (70%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || ||||| || | || || || | || || |||||||| ||||| || Sbjct 173139 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAA 173080 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || || | |||||| || | || | || ||||||||| ||| || || | | Sbjct 173079 GATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATT 173020 Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | | ||||| || | ||||| || | |||||||| ||||| || || || ||||| Sbjct 173019 CTCAATGGTGTCACTGGGCTCCACCTCAAGAGTGATGGTCTTGCCAGTCAGGGTTTTTAC 172960 Query 42197 AAAGATTTGCATTTTC 42212 |||||| ||||| ||| Sbjct 172959 AAAGATCTGCATGTTC 172944 >seq738 Length=1186676 Score = 96.9 bits (106), Expect = 4e-15 Identities = 74/87 (85%), Gaps = 2/87 (2%) Strand=Plus/Plus Query 56994 TATGAAAAATTT--TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGG 57051 |||||||| | | ||||| || | | |||||||||| ||||||||||||||||||||| Sbjct 39044 TATGAAAATTCTGGTCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGG 39103 Query 57052 ACATACTCACCACTATACTACCGAGGA 57078 |||||||||||||||||| |||||| Sbjct 39104 GGATACTCACCACTATACTAACGAGGA 39130 >seq29872 Length=509 Score = 89.7 bits (98), Expect = 6e-13 Identities = 69/82 (84%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 ||||| || |||| || | | |||||||||| ||||| |||||||||||||||| |||| Sbjct 415 AAAAACTTACTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATAC 474 Query 57058 TCACCACTATACTACCGAGGAT 57079 | ||||||||||| ||||||| Sbjct 475 TGTCCACTATACTAACGAGGAT 496 >seq19796 Length=866 Score = 87.8 bits (96), Expect = 2e-12 Identities = 68/81 (84%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 |||||| |||| || | | |||||||||||||||| |||||||||||||||| |||| Sbjct 559 AAAAATAAACTCCCCGTCGGGGAATCGAACCCTGGTCTTCCGCGTGACAGGCGGAGATAC 618 Query 57058 TCACCACTATACTACCGAGGA 57078 | ||||||||||| |||||| Sbjct 619 TGTCCACTATACTAACGAGGA 639 >seq2275 Length=43787 Score = 86.0 bits (94), Expect = 7e-12 Identities = 69/82 (84%), Gaps = 1/82 (1%) Strand=Plus/Minus Query 56998 AAAAATTTT-CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 57056 ||| ||||| |||| || | | |||||||||| ||||| |||||||||||||||| ||| Sbjct 23771 AAACATTTTACTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATA 23712 Query 57057 CTCACCACTATACTACCGAGGA 57078 || ||||||||||| |||||| Sbjct 23711 CTGTCCACTATACTAACGAGGA 23690 >seq23301 Length=1685 Score = 84.2 bits (92), Expect = 2e-11 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 57020 AATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAGGA 57078 |||||||||||||||| |||||||||||||||| ||||| ||||||||||| |||||| Sbjct 6 AATCGAACCCTGGTCTTCCGCGTGACAGGCGGAGATACTGTCCACTATACTAACGAGGA 64 >seq2887 Length=65953 Score = 82.4 bits (90), Expect = 8e-11 Identities = 66/80 (83%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 56999 AAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 57058 |||| | |||| || | | |||||||||| ||||| |||||||||||||||| ||||| Sbjct 55202 AAAAGTGACTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACT 55143 Query 57059 CACCACTATACTACCGAGGA 57078 ||||||||||| |||||| Sbjct 55142 GTCCACTATACTAACGAGGA 55123 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 542979680226880