Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Takifugu_20flavidus_20[genbank_20GCA_5F000400755.1_202013-05-30] 34,332 sequences; 378,032,400 total letters Query= NC_019529.1 Length=111506 Score E Sequences producing significant alignments: (Bits) Value seq1238 84.2 2e-11 seq2028 82.4 5e-11 >seq1238 Length=71492 Score = 84.2 bits (92), Expect = 2e-11 Identities = 198/290 (68%), Gaps = 18/290 (6%) Strand=Plus/Minus Query 108272 AGCAGCAGAAGCAACTGGTCAAGCAGGTACAGCTACAGAACAAGCAAAAGCAGCGAAGGC 108331 |||||||| | || | | | ||||| |||| ||| | |||| |||||| | || Sbjct 52329 AGCAGCAGCAACAGCAGCTACAGCAG---CAGCAGCAGTAGCAGCAGCAGCAGCTACAGC 52273 Query 108332 ATCTgcaacaaaagcag-agcaagaacaaca--agcagcactagcagcccaaaaggcagc 108388 | | |||||| ||||| |||| | | ||| ||||||| |||||| | ||||| Sbjct 52272 AGCAGCAACAGCAGCAGCAGCAGCAGCTACAGCAGCAGCAGCAGCAGCTACAGTAGCAGC 52213 Query 108389 agaaaaagcGAGAGACGCAGCTAAATCTTCTGAAACAGCAGCAGCTCAATCAGCAG--GC 108446 || | ||| | || ||||| | || | | | ||||||||||| | |||||| || Sbjct 52212 AGCAGCAGCTACAGCAGCAGCAGCAGCTACAGCAGCAGCAGCAGCTACAGCAGCAGCAGC 52153 Query 108447 AGC----GCATATAGCTACCAACAG--GCAGCTAAAGCATCTGAAGATAAAGCAGACCAA 108500 ||| ||| ||||| || ||| ||||||| |||| | | || || ||||| || Sbjct 52152 AGCTACAGCA-GCAGCTAGCAGCAGCAGCAGCTACAGCAGCAGCAGCTACAGCAG--CAG 52096 Query 108501 TACCAAGCTGCGGCAGCCACTTCAGCCGCAGATGCAGCTGCATCAGCAGC 108550 | | ||| || ||||| || |||| |||| | |||| ||| ||||||| Sbjct 52095 CAGC-AGCAGCAGCAGCTACAGCAGCAGCAGCTACAGCAGCAGCAGCAGC 52047 >seq2028 Length=14448 Score = 82.4 bits (90), Expect = 5e-11 Identities = 222/325 (68%), Gaps = 20/325 (6%) Strand=Plus/Minus Query 108272 AGCAGCAGAAGCAACTGGTCAAGCAGGTACAGCTACAGAACAAGCAAAAGCAGCGAAGGC 108331 |||||||| |||| || ||||| ||||||||| | |||| |||||| | || Sbjct 856 AGCAGCAGCAGCAGCTACAGCAGCAGCAGCAGCTACAGCAGCAGCAGCAGCAGCTACAGC 797 Query 108332 ATCTgcaacaaaagcag-agcaagaacaacaagcagca-ctagcagcccaaaaggcagca 108389 | | ||| | | ||||| ||| | | || || |||||| ||| |||| | |||||| Sbjct 796 AGCAGCAGCTACAGCAGCAGCTACAGCAGCA-GCAGCAGCTA-CAGCAGCA---GCAGCA 742 Query 108390 gaaaaagcG--AG-AGACGCAGCTAAATCTTCTGAA---ACAGCAGCAGCTCAATCAGCA 108443 | | ||| || || ||||||| | | | | | |||||||||||| | ||||| Sbjct 741 GCTACAGCAGCAGCAGCAGCAGCTACAGCAGCAGCAGCTACAGCAGCAGCTACAGCAGCA 682 Query 108444 GGCAGCGCATATAGCTACCAACAG--GCAGCTAAAGCATCTGAAGATAAAGCAGACCAAT 108501 ||||| || ||| | || ||| ||||||| |||| | | || || ||||| || Sbjct 681 -GCAGCAGCTACAGC-AGCAGCAGCAGCAGCTACAGCAGCAGCAGCTACAGCAG--CAGC 626 Query 108502 ACCAAGCTGCGGCAGCCACTTCAGCCGCAGATGCAGCTGCATCAGCAGCGTCAATGACAC 108561 | | ||| || ||||| || |||| |||| ||||| ||| ||||||| || ||| Sbjct 625 AGC-AGCAGCAGCAGCAGCTACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCTACAG 567 Query 108562 AATCTGTAGCAGACGCAACAGCAGC 108586 | | | ||||| || |||||||| Sbjct 566 CAGCAGCAGCAGCAGCTACAGCAGC 542 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356545151483284