Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Takifugu_20flavidus_20[genbank_20GCA_5F000400755.1_202013-05-30] 34,332 sequences; 378,032,400 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq1101 107 1e-17 seq841 96.9 2e-14 seq820 87.8 1e-11 seq17947 86.0 4e-11 seq2263 86.0 4e-11 >seq1101 Length=282054 Score = 107 bits (118), Expect = 1e-17 Identities = 109/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 474735 ATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATG 474794 |||| |||||||| || ||||| || || |||||||| || || ||||| || || |||| Sbjct 69101 ATGCTGTAATTACGGTGCCAGCCTACTTCAATGATTCGCAGCGCCAAGCCACAAAGGATG 69042 Query 474795 CGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCAC 474854 | || | ||| | || || |||||| | ||||| |||||||||||||| || || || Sbjct 69041 CCGGCACAATCTCTGGCCTCAATGTTCTGCGTATCATTAATGAACCAACTGCTGCTGCTA 68982 Query 474855 TTGCTTATGGTCTTGATAAGAA 474876 |||| ||||| | || ||||| Sbjct 68981 TTGCATATGGGTTGGACAAGAA 68960 Score = 89.7 bits (98), Expect = 3e-12 Identities = 118/164 (72%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 474329 GCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAA 474388 ||| ||||||| ||| | ||||| || ||| ||||| | ||| | ||| |||| ||| Sbjct 69838 GCAGTTGGTATCGATCTGGGAACAACCTACTCCTGTGTTGGTGTGTTTCAACATGGAAAA 69779 Query 474389 GTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACT 474448 || ||||| ||||||||||| || || || || || ||||| || || |||| ||| Sbjct 69778 GTTGAAATCATTGCCAATGATCAGGGCAACAGGACCACACCCAGCTACGTGGCTTTCACT 69719 Query 474449 GAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGC 474492 || | || || ||||||||||| || ||| | || | ||| Sbjct 69718 GACTCAGAGAGGCTGATTGGAGATGCAGCCAAAAACCAGGTTGC 69675 >seq841 Length=18472 Score = 96.9 bits (106), Expect = 2e-14 Identities = 353/548 (64%), Gaps = 6/548 (1%) Strand=Plus/Plus Query 474329 GCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAA 474388 |||||||| || || | || || || ||| |||| | |||| || |||| ||| Sbjct 17559 GCAATTGGCATCGACCTGGGCACCACCTACTCCCGTGTGGGGGTTTTCCAGCATGGAAAA 17618 Query 474389 GTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACT 474448 |||||||| |||||||| ||||| || || || || || || ||||| | || ||| Sbjct 17619 GTAGAAATCATTGCCAACGACCAGGGCAACAGGACCACCCCCAGCTATGTGGCCTTCACT 17678 Query 474449 GAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAAT 474508 || || || || || || || || || || | || | || | || || || Sbjct 17679 GACACGGAGAGGCTCATCGGGGACGCGGCAAAGAACCAGGTGGCCTTGAACCCCAGCAAC 17738 Query 474509 ACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCT 474568 || | ||||||||||| ||| ||||||| | | || || ||| |||| || ||| || Sbjct 17739 ACCGTGTTTGATGCTAAGAGACTGATTGGGAGAAGATTGGAGGATCCCACCGTTCAAGCT 17798 Query 474569 GATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACC--ATATATAGAAG 474626 || || || ||||| || ||||| | | ||| || || || | || || | Sbjct 17799 GACATAAAACACTGGCCATTCCAGGTGGTTGGAGATGGAGGGAAGCCCAAAATCCAGGTG 17858 Query 474627 CAATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAG 474686 |||||| ||| || || || | || || | ||||| || |||||| | | Sbjct 17859 GAATACA--AAGGAGAGGAAAAGAGCTTCTACCCTGAGGAGATTTCCTCTATGGTTCTGG 17916 Query 474687 CCAAAATGAAACAAACCGC-GAGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAATT 474745 || ||||| | | ||| ||| | || || || || || ||||||| || || Sbjct 17917 TGAAGATGAAGGAGATCGCAGAG-GCCTACCTCGGTCAGAGGGTGTCTGATGCCGTCATC 17975 Query 474746 ACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATT 474805 || || ||||| || || || || ||||| | || || || ||||| || || || Sbjct 17976 ACGGTCCCAGCGTACTTCAACGACTCTCAGAGACAGGCGACCAAAGACGCCGGCGTCATC 18035 Query 474806 GCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGT 474865 || || | || || | | || || || || || || || || || |||| || ||| Sbjct 18036 GCCGGATTGAACGTCCTGAGGATCATCAACGAGCCGACGGCTGCAGCCTTTGCGTACGGT 18095 Query 474866 CTTGATAA 474873 || || || Sbjct 18096 CTGGACAA 18103 >seq820 Length=630633 Score = 87.8 bits (96), Expect = 1e-11 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 476032 TGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAAGG 476091 ||||||||||||| | || || || ||||| | | || | ||| | || || Sbjct 247154 TGAAGGTGAAAGAGCCATGACCAAGGACAATAATATCTTGGGCAAGTTTGAGCTGACTGG 247095 Query 476092 TATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAA 476151 ||||| ||||| |||||||| || || || ||||| || || ||||| |||||||| || Sbjct 247094 GATTCCACCTGCACCCAGAGGCGTCCCCCAGATTGAGGTGACCTTTGACATTGATGCCAA 247035 Query 476152 TGGTATTCTTAATGTTACTGC 476172 ||| ||||||||||| |||| Sbjct 247034 TGGCATTCTTAATGTGTCTGC 247014 >seq17947 Length=371 Score = 86.0 bits (94), Expect = 4e-11 Identities = 179/267 (67%), Gaps = 0/267 (0%) Strand=Plus/Plus Query 474329 GCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAA 474388 || ||||| || || | ||||| || ||| ||||| | |||| || |||| ||| Sbjct 9 GCGATTGGCATCGACCTGGGAACCACCTACTCCTGTGTGGGGGTTTTCCAGCATGGAAAA 68 Query 474389 GTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACT 474448 |||||||| || ||||| ||||| || || || || || || ||||| | || | | Sbjct 69 GTAGAAATCATCGCCAACGACCAGGGCAACAGGACCACCCCCAGCTATGTGGCCTTCATT 128 Query 474449 GAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAAT 474508 || || || ||| || || || || || || | || | || | || || || Sbjct 129 GACACGGAGAGTCTCATCGGGGACGCGGCAAAGAACCAGGTGGCCTTGAACCCCAGCAAC 188 Query 474509 ACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCT 474568 || | ||||||||||| ||| ||||||| | | || || ||| |||| || ||| | Sbjct 189 ACAGTGTTTGATGCTAAGAGACTGATTGGGAGAAGATTGGAGGATCCCACCGTTCAAGGT 248 Query 474569 GATATGCGTCATTGGCCTTTTAAGGTG 474595 || || || ||||| || |||||| Sbjct 249 GACATAAAACACTGGCCATTCAAGGTG 275 >seq2263 Length=104132 Score = 86.0 bits (94), Expect = 4e-11 Identities = 179/267 (67%), Gaps = 0/267 (0%) Strand=Plus/Plus Query 474329 GCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAA 474388 || ||||| || || | ||||| || ||| ||||| | |||| || |||| ||| Sbjct 22460 GCGATTGGCATCGACCTGGGAACCACCTACTCCTGTGTGGGGGTTTTCCAGCATGGAAAA 22519 Query 474389 GTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACT 474448 |||||||| || ||||| ||||| || || || || || || ||||| | || || Sbjct 22520 GTAGAAATCATCGCCAACGACCAGGGCAACAGGACCACCCCCAGCTATGTGGCCTTCACC 22579 Query 474449 GAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAAT 474508 || || || || || || || || || || | || | || | || || || Sbjct 22580 GACACGGAGAGGCTCATCGGGGACGCGGCAAAGAACCAGGTGGCCTTGAACCCCAGCAAC 22639 Query 474509 ACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCT 474568 || | ||||||||||| ||| ||||||| | | || || ||| |||| || ||| || Sbjct 22640 ACCGTGTTTGATGCTAAGAGACTGATTGGGAGAAGATTGGAGGATCCCACCGTTCAAGCT 22699 Query 474569 GATATGCGTCATTGGCCTTTTAAGGTG 474595 || || || ||||| || |||||| Sbjct 22700 GACATAAAACACTGGCCATTCAAGGTG 22726 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3266706533941136