Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Takifugu_20flavidus_20[genbank_20GCA_5F000400755.1_202013-05-30] 34,332 sequences; 378,032,400 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq81 105 6e-18 seq854 93.3 4e-14 >seq81 Length=187384 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | ||||| || || || || || || || || || || || ||| | Sbjct 173176 ATGCAGATCTTTGTAAAAACCCTGACTGGCAAGACCATCACTCTTGAGGTGGAGCCCAGC 173235 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| ||||| || || || ||||| Sbjct 173236 GACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTGATCAG 173295 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | |||||||||| || || |||||||| ||| | | | | || || || ||| Sbjct 173296 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCCGACTACAAC 173355 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || ||||| || || || ||| | || |||| || | || ||| Sbjct 173356 ATCCAGAAGGAGTCCACCCTCCACCTTGTCCTGCGTCTGAGGGGGGGC 173403 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | ||||| || || || || || || || || || || || ||| | Sbjct 173404 ATGCAGATCTTTGTAAAAACCCTGACTGGCAAGACCATCACTCTTGAGGTGGAGCCCAGC 173463 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| ||||| || || || ||||| Sbjct 173464 GACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTGATCAG 173523 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | |||||||||| || || |||||||| ||| | | | | || || || ||| Sbjct 173524 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCCGACTACAAC 173583 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || ||||| || || || ||| | || |||| || | || ||| Sbjct 173584 ATCCAGAAGGAGTCCACCCTCCACCTTGTCCTGCGTCTGAGGGGGGGC 173631 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | ||||| || || || || || || || || || || || ||| | Sbjct 173632 ATGCAGATCTTTGTAAAAACCCTGACTGGCAAGACCATCACTCTTGAGGTGGAGCCCAGC 173691 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| ||||| || || || ||||| Sbjct 173692 GACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTGATCAG 173751 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | |||||||||| || || |||||||| ||| | | | | || || || ||| Sbjct 173752 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCCGACTACAAC 173811 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 || || ||||| || || || ||| | || |||| Sbjct 173812 ATCCAGAAGGAGTCCACCCTCCACCTTGTCCTGCG 173846 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | ||||| || || || || || || || || || || || ||| Sbjct 172948 ATGCAGATCTTTGTAAAAACCCTGACTGGCAAGACCATCACTCTTGAGGTGGAGCCCAGT 173007 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| ||||| || || || ||||| Sbjct 173008 GACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTGATCAG 173067 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | |||||||||| || || |||||||| ||| | | | | || || || ||| Sbjct 173068 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCCGACTACAAC 173127 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || ||||| || || || ||| | || |||| || | || ||| Sbjct 173128 ATCCAGAAGGAGTCCACCCTCCACCTTGTCCTGCGTCTGAGGGGGGGC 173175 >seq854 Length=240782 Score = 93.3 bits (102), Expect = 4e-14 Identities = 121/168 (72%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 139084 GAGGCTATGTTGCACACCGCCACTTCGTCGGGGTCGCTGTATTCGACAATTTCGGCACAC 139143 ||||| | || || || || || |||||| | | ||||||| |||||||| | || Sbjct 75241 GAGGCCAGATTACAAACNGCTACCTCGTCGCTGCTGGTGTATTCCACAATTTCTGTGCAT 75300 Query 139144 AAATTACTACACTTGATCGTACCTAAATTTTGTTGATTGCTTTTTCGGTTACAAGCATCT 139203 | ||| || | |||||| || || | ||| || || ||||| || | || || |||||| Sbjct 75301 AGATTGCTGCTCTTGATGGTGCCCAGATTCTGCTGGTTGCTCTTCCTATTGCAGGCATCT 75360 Query 139204 TTGTAAAGCATATACGGTGTGCCAGTTTCCACTTGTGTCTCTATAATG 139251 ||||| ||||| || || ||||| ||||| || | |||||| ||| Sbjct 75361 TTGTAGAGCATGTATGGAGTGCCGGTTTCAGTCTGGGACTCTATGATG 75408 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449704526444960