Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Takifugu_20flavidus_20[genbank_20GCA_5F000400755.1_202013-05-30] 34,332 sequences; 378,032,400 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq854 168 8e-37 seq681 89.7 6e-13 seq1534 84.2 3e-11 >seq854 Length=240782 Score = 168 bits (186), Expect = 8e-37 Identities = 618/958 (65%), Gaps = 20/958 (2%) Strand=Plus/Plus Query 118518 ATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGAC 118577 || ||| | || || | ||| |||||||||| || ||||| | || | | | || ||| Sbjct 75046 ATGAATGCGTCGGCCAAACCCTGGACACCGATTCCTATTGGCCTGTGGCGCTTGTTGGAC 75105 Query 118578 TTCCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTG 118637 ||| ||| ||| ||||| |||| |||| || | | | || | |||||| Sbjct 75106 TTCTCAGCTTCGGGCACTGGATAGTAATTAATATCTATGATCTTGTTCAAGTTTTTGACA 75165 Query 118638 ACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACA 118697 || ||||| || | || || |||| | |||||| | || ||| | |||| Sbjct 75166 ACTACCTTGGTCACAGCAGCTAGTTTTTGAAAGTCAAAAGTCCG---CTCAGCGGTGACG 75222 Query 118698 TACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTAC 118757 ||| | || |||| || ||||||||||| || | ||| || | ||||| Sbjct 75223 TACATGTTGAGTGCGACGGAGGCCAGATTACAAACNGCTACCTCGTCGCTGCTGGTGTAT 75282 Query 118758 TCTATAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGAC 118817 || | |||||| ||||| | || ||||| |||||||||| |||| || || | Sbjct 75283 TCCACAATTTCTGTGCATAGATTGCTGCTCTTGATGGTGCCCAGATTCTGCTGGTTGCTC 75342 Query 118818 TTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTG 118877 || | || || ||||| ||||| ||||||||||| || || || || || ||||||| Sbjct 75343 TTCCTATTGCAGGCATCTTTGTAGAGCATGTATGGAGTGCCGGTTTCAGTCTGGGACTCT 75402 Query 118878 AGAATAGCCTTCCAGACAT-CGGCAGCTGGCACAGTGGCGTTGGCTCGCCCCTCTTCCTC 118936 | || || | ||| || | | | || || || ||| | || || |||| ||| Sbjct 75403 ATGATGGCATGCCAAACCTGCTGGGCCTTCACCACACGC-TTGACGCGGCCTTCTTTCTC 75461 Query 118937 GTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTT 118996 ||| || |||||||| |||||||| || ||| | ||| ||||| || | Sbjct 75462 GTATTTGGTGTAGAGCTTCTCAAACTCCTCCCCCCAGCACTCGTTCAGCCCGGGACATTC 75521 Query 118997 ATCTGGGCAGAAGAGAGACCA---TTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTC 119053 ||||| || | |||||||| || || |||| |||| || |||||| | ||| Sbjct 75522 GTCTGGACACATTAGAGACCAGTCCTGGTTACTCTCC---ACCCTCTCCATGAACAAGTC 75578 Query 119054 TGGGATCCAGAGCGCCGAGAAGAGATC-CCGACAGCGAGCTTCTTCATCCCCCTGATTGA 119112 |||||||| | || |||| || || | | | ||| || | || || || Sbjct 75579 AGGGATCCACATAGCGTAGAAAAGGTCTCTGGCTCTCTGCTCCTCTTTTCCAGTG-TTCT 75637 Query 119113 GACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTG 119172 |||||||| ||||| | ||||| | ||||| ||||||||||||| |||| | Sbjct 75638 TCTTCAACTCCAGGAAGTCAAATATATCGGAATGCCAGGGTTCCAGGTACATGGCGAAAG 75697 Query 119173 ACCC---CTTACGACGACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAA 119229 ||| | | ||| |||||| ||||| | || ||| ||| | || | | Sbjct 75698 CCCCAGGCCTCTTGTTTCCACCCTGGTCCACATAGCGTGCGGTGTTGTTGTAAACTCTCA 75757 Query 119230 GCATTGGAATGATACCATCGGATTGGCCATTTGTCCCCCGAATACGAGACTT--ATTGGC 119287 |||| || | | |||| ||| | |||||| || || || | |||| | | Sbjct 75758 GCATGGGGACAAGCCCATTGGAGTTGCCATTGGTGCCAGCGAT--GTAACTTCCCGTAGA 75815 Query 119288 TCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTC 119347 ||||| | || | || ||| || || || ||| |||| ||||| ||||||||| Sbjct 75816 TCTGATGCAGCTGACGGCCACACCGATTCCTCCAGCCGACTTGGAGATGAGCGCGCACTG 75875 Query 119348 CGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCT 119407 | || || | || || || ||||| |||| |||| | |||| ||||||||||| Sbjct 75876 TTTCAGCGTGTCATAAATGCCCTCGATGCTGTCATCCTTCATGGCGAGCAGGAAGCAGCT 75935 Query 119408 CGACATTTGAGGCCTGGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAAC 119465 |||| || |||||| ||||| || || ||||| || || | || ||| ||||| Sbjct 75936 GGACAGCTGTGGCCTGTTGGTACCTGCATTAAAGAGTGTCGGGGAGGCATGGGTGAAC 75993 >seq681 Length=269650 Score = 89.7 bits (98), Expect = 6e-13 Identities = 75/92 (82%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 118182 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 118241 ||||| ||| | ||||| | ||| | | |||| ||||| |||| ||| ||||| |||||| Sbjct 111467 TAGATGTTGCTGGTGTAGGCCTCGATGGACTCGTTGTTCCCCAGGATCTGGGCGGTGGAG 111408 Query 118242 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTT 118273 |||||||||||||| |||| || |||||||| Sbjct 111407 GCTGTGGGCATGGGAGCCAGCAGCAGGCTGTT 111376 Score = 86.0 bits (94), Expect = 8e-12 Identities = 113/155 (73%), Gaps = 4/155 (3%) Strand=Plus/Minus Query 118739 CTCATCCTTATCAGTGTACTCTATAATTTCCGTGCACAAGTT--TGAACTCTTAATGGTG 118796 |||||| || |||||||||| ||| || ||||||| || || | | | |||||| Sbjct 110569 CTCATCTTTGCTCGTGTACTCTACAATCTCTGTGCACAGATTGCTGGATT--TGATGGTG 110512 Query 118797 CCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTC 118856 |||| ||||| || || ||| |||| || || |||||||| ||||||||||| || Sbjct 110511 CCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTATGGTGTG 110452 Query 118857 CCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCA 118891 || || || ||||| |||| || || || | ||| Sbjct 110451 CCGGTTTCTGTTTGAGACTCGATGATGGCGTACCA 110417 >seq1534 Length=15379 Score = 84.2 bits (92), Expect = 3e-11 Identities = 84/109 (77%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 130035 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCT 130094 ||||||| | | |||||| || || |||||| ||| || ||||| || |||| |||| Sbjct 8667 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATCAGGCCCCTTTTCT 8726 Query 130095 TCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCAC 130143 ||| |||||| || | | ||| || ||||||||||| || |||||||| Sbjct 8727 TCAGCCAGAAGATGGAAGCAAAGGACCCAGAGAAGAAAATACCCTCCAC 8775 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618169798533920