Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Takifugu_20flavidus_20[genbank_20GCA_5F000400755.1_202013-05-30] 34,332 sequences; 378,032,400 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq854 241 1e-58 seq681 96.9 4e-15 seq1534 87.8 2e-12 >seq854 Length=240782 Score = 241 bits (266), Expect = 1e-58 Identities = 487/719 (68%), Gaps = 18/719 (3%) Strand=Plus/Plus Query 79105 ATTTCTGTGCACAAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCG 79164 ||||||||||| | ||| |||||||||||| | |||| ||||||||||||| Sbjct 75289 ATTTCTGTGCATAGATTGCTGCTCTTGATGGTGCCCAGATTCTGCTGGTTGCTCTTCCTA 75348 Query 79165 TTACAGGCGTCCTTGTAGCACATGTACGGCGTCCCGGTCTCAACCTG--ACTCTTGAGAA 79222 || ||||| || |||||| |||||| || || ||||| ||| ||| ||||| | | Sbjct 75349 TTGCAGGCATCTTTGTAGAGCATGTATGGAGTGCCGGTTTCAGTCTGGGACTCT--ATGA 75406 Query 79223 CGCCGTCCCAGATGTCCCGGGCCCGGACAACCTTCTTGTACCGACCCTGTGCGACGTACG 79282 | | | ||| | | | ||||| || || |||| || || | | |||| Sbjct 75407 TGGCATGCCAAACCTGCTGGGCCTTCACCACACGCTTGACGCGGCCTTCTTTCTCGTATT 75466 Query 79283 TCCGGTACAACTCGTTGAAAGCCTCCCCATAGACATCGGGCAGGCCCGGGCACTCGTGCG 79342 | ||| | || | || ||||||| || ||| ||| || || || |||| | Sbjct 75467 TGGTGTAGAGCTTCTCAAACTCCTCCCCCCAGCACTCGTTCAGCCCGGGACATTCGTCTG 75526 Query 79343 GGCACATCAGGTGCCAGTCCTCGTCCTTCTCAACCTTCTCCATGAAGAGGTCCGGGATCC 79402 | ||||| || |||||||| || |||| ||| |||||||||| | ||| ||||||| Sbjct 75527 GACACATTAGAGACCAGTCCTGGTTACTCTCCACCCTCTCCATGAACAAGTCAGGGATCC 75586 Query 79403 ACAGGGCCGTGAAGAGGTCGCGGCAACGCATCTCCTCGTCGCCCTGGTTCAGACGCAGCT 79462 ||| || ||| ||||| | | | | |||||| | || |||| || || Sbjct 75587 ACATAGCGTAGAAAAGGTCTCTGGCTCTCTGCTCCTCTTTTCCAGTGTTCTTCTTCAACT 75646 Query 79463 CGAGAAAGTCCATGATGTCGGCGTGCCACGGCTCCAGATAGATGGCGAACGAACCCTTGC 79522 | || ||||| | || |||| ||||| || ||||| || |||||||| | || | Sbjct 75647 CCAGGAAGTCAAATATATCGGAATGCCAGGGTTCCAGGTACATGGCGAAAGCCCCAGGCC 75706 Query 79523 GCTTGCCGCCGCCCTGGTTGACGTACCGGGCCGTGTTGTTGAAAACTCGGAGCATGGGCA 79582 |||| || ||||||| || || || || ||||||||| |||||| |||||||| | Sbjct 75707 TCTTGTTTCCACCCTGGTCCACATAGCGTGCGGTGTTGTTGTAAACTCTCAGCATGGGGA 75766 Query 79583 CGATGCCGTCGGCGACGCCGTTCGTCCCGTTGATTCGTGTACCGCTCGCCCGAATGTTCG 79642 | | || | || | ||| || || || ||| ||| | |||| | | | Sbjct 75767 CAAGCCCATTGGAGTTGCCATTGGTGCCAGCGAT----GTAACTT---CCCGTAGATCTG 75819 Query 79643 A-GCAGTGGATT------CCGATGCCCCCGGACCACTTGGAGATGTGCGCGCACTCCTTG 79695 | |||| || ||||| || || | | ||||||||||| ||||||||| || Sbjct 75820 ATGCAGCTGACGGCCACACCGATTCCTCCAGCCGACTTGGAGATGAGCGCGCACTGTTTC 75879 Query 79696 AGCGTCTCGTAGATGCCCTCGATCGAGTCGTCCTTCATAGCGACCAGGAAGCAGCTCGAC 79755 ||||| || || ||||||||||| ||| |||||||| |||| |||||||||||| ||| Sbjct 75880 AGCGTGTCATAAATGCCCTCGATGCTGTCATCCTTCATGGCGAGCAGGAAGCAGCTGGAC 75939 Query 79756 ATCTGTGGGTTGTTCGTACCGGCGTTGAAGAGGGTCGGCGTCGCGTGCGTGAAGAACTT 79814 | |||||| |||| ||||| || || ||||| ||||| | || || ||||| |||| Sbjct 75940 AGCTGTGGCCTGTTGGTACCTGCATTAAAGAGTGTCGGGGAGGCATGGGTGAACCACTT 75998 Score = 170 bits (188), Expect = 2e-37 Identities = 518/792 (65%), Gaps = 18/792 (2%) Strand=Plus/Minus Query 19166 GAGACATACGACCTGATGAGCCAGAAGTTCTTCACGCACGCGACGCCGACCCTTTTCAAC 19225 || || ||| ||||| || |||||| ||||| || || | ||||| || || || Sbjct 76022 GAAACCTACAACCTGCTGTCAGAGAAGTGGTTCACCCATGCCTCCCCGACACTCTTTAAT 75963 Query 19226 GCCGGTACGAACAACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAGGATGACAGC 19285 || ||||| |||| || ||| |||| ||||| ||||| | || ||||||||||||||| Sbjct 75962 GCAGGTACCAACAGGCCACAGCTGTCCAGCTGCTTCCTGCTCGCCATGAAGGATGACAGC 75903 Query 19286 ATTGAGGGCATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGTCCGGGGGT 19345 || |||||||| || || ||||| || ||||||||| ||||||||||| | | || || Sbjct 75902 ATCGAGGGCATTTATGACACGCTGAAACAGTGCGCGCTCATCTCCAAGTCGGCTGGAGGA 75843 Query 19346 ATCGG------GATCCACTGC-TCGAATATCCGGTCGAGTGGTACACGAATCAATGGGAC 19398 ||||| || |||| || || | ||| || | ||| ||| ||| || Sbjct 75842 ATCGGTGTGGCCGTCAGCTGCATCAGATCTACGG--GA-AGTTAC----ATCGCTGGCAC 75790 Query 19399 GAACGGAGTAGCCGACGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAGGTA 19458 || || || | || | ||||| ||||| | || | ||||||||| || | || Sbjct 75789 CAATGGCAACTCCAATGGGCTTGTCCCCATGCTGAGAGTTTACAACAACACCGCACGCTA 75730 Query 19459 CGTCAACCAGGGGGGCGGCAA-ACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGC 19517 || ||||||| || ||| | || ||| | |||||||| ||||| || || |||| Sbjct 75729 TGTGGACCAGGGTGGAAACAAGAGGCCTGGG-GCTTTCGCCATGTACCTGGAACCCTGGC 75671 Query 19518 ACGCGGACGTCATGGATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGCGCT 19577 | | || | | || ||||| || || |||| || | |||||| | | Sbjct 75670 ATTCCGATATATTTGACTTCCTGGAGTTGAAGAAGAACACTGGAAAAGAGGAGCAGAGAG 75611 Query 19578 GTCGCGACCTCTTCACGGCCTTGTGGATTCCGGACCTATTCATGGAGAAGGTTGAGAAGG 19637 | ||||| ||| || ||||||| || ||| | |||||||||| ||| |||| Sbjct 75610 CCAGAGACCTTTTCTACGCTATGTGGATCCCTGACTTGTTCATGGAGAGGGTGGAGAGTA 75551 Query 19638 ACGAAGAATGGCACCTGATGTGCCCGCACGAATGCCCTGGCCTACCCGACGTCTACGGCG 19697 || | || ||| || ||||| || ||||||| || || || ||| || || | Sbjct 75550 ACCAGGACTGGTCTCTAATGTGTCCAGACGAATGTCCCGGGCTGAACGAGTGCTGGGGGG 75491 Query 19698 AGGCGTTCAATGAGTTGTACCGGACTTACGTAGCCCAGGGCCGGTTCAAGAAGGTGGTCC 19757 ||| ||| | || | ||| | |||| | ||||| ||||| ||||| Sbjct 75490 AGGAGTTTGAGAAGCTCTACACCAAATACGAGAAAGAAGGCCGCGTCAAGCGTGTGGTGA 75431 Query 19758 GGGCCCGGGACGTCTGGGACCGCGTCCTCAAAAGCCAGGTCGAGACCGGCACACCGTACA 19817 ||||| | | || ||| | | || | | |||| || |||||||| || |||| Sbjct 75430 AGGCCCAGCAGGTTTGGCATGCCATCATAGAGTCCCAGACTGAAACCGGCACTCCATACA 75371 Query 19818 TGTGCTACAAGGACGCCGCGAACGCCAAGTCAAATCAGAAGAACATCGGCGCGATCAAGT 19877 || |||||| || ||| || ||| || ||| |||| | ||| | |||||| Sbjct 75370 TGCTCTACAAAGATGCCTGCAATAGGAAGAGCAACCAGCAGAATCTGGGCACCATCAAGA 75311 Query 19878 CGTCCAACCTGTGTACTGAAATCATGGAGGTTTCCAAGCCG-GACGAGACTGCCGTGTGT 19936 ||| || || || ||||| |||| | | ||| | |||||| || || ||| Sbjct 75310 GCAGCAATCTATGCACAGAAATTGTGGA-ATACACCAGCAGCGACGAGGTAGCNGTTTGT 75252 Query 19937 AATCTGGCGTCC 19948 |||||||| ||| Sbjct 75251 AATCTGGCCTCC 75240 Score = 95.1 bits (104), Expect = 1e-14 Identities = 84/105 (80%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 78507 GAACTCGCCGGCCAGGGTCCGGCGCAGGTAGATGTTGGTCGTGTACGGCTCGAAAGCCTC 78566 |||||| |||| |||| || ||| |||||||||| | ||||| | |||| || ||| Sbjct 74678 GAACTCCCCGGACAGGACCCTGCGGGTGTAGATGTTGCTGGTGTAGGCTTCGATAGACTC 74737 Query 78567 GTTGTTCCCCATGATCTGGGCGGTCGAGGCGGTCGGCATGGGTGC 78611 |||||| |||| |||||||||||| |||||||| ||||| || || Sbjct 74738 GTTGTTGCCCAGGATCTGGGCGGTTGAGGCGGTGGGCATCGGGGC 74782 Score = 87.8 bits (96), Expect = 2e-12 Identities = 71/86 (83%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 20385 TGCTCGTCGCGCCCATGCCGACCGCCTCGACCGCCCAGATCATGGGGAACAACGAGGCTT 20444 ||||| | || || ||||| |||||||| |||||||||||| |||| ||||||||| || Sbjct 74790 TGCTCTTAGCCCCGATGCCCACCGCCTCAACCGCCCAGATCCTGGGCAACAACGAGTCTA 74731 Query 20445 TCGAGCCGTACACGACCAACATCTAC 20470 |||| | ||||| | |||||||||| Sbjct 74730 TCGAAGCCTACACCAGCAACATCTAC 74705 >seq681 Length=269650 Score = 96.9 bits (106), Expect = 4e-15 Identities = 82/101 (81%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 79105 ATTTCTGTGCACAAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCG 79164 || |||||||||| ||| || ||||||||||| | ||||| ||||||||||||| | Sbjct 110544 ATCTCTGTGCACAGATTGCTGGATTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCTG 110485 Query 79165 TTACAGGCGTCCTTGTAGCACATGTACGGCGTCCCGGTCTC 79205 || ||||||||||||||| |||||| || || ||||| || Sbjct 110484 TTGCAGGCGTCCTTGTAGAGCATGTATGGTGTGCCGGTTTC 110444 Score = 93.3 bits (102), Expect = 5e-14 Identities = 78/96 (81%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 78525 CCGGCGCAGGTAGATGTTGGTCGTGTACGGCTCGAAAGCCTCGTTGTTCCCCATGATCTG 78584 || |||| |||||||||| | ||||| | ||||| | |||||||||||||| |||||| Sbjct 111477 CCTGCGCGTGTAGATGTTGCTGGTGTAGGCCTCGATGGACTCGTTGTTCCCCAGGATCTG 111418 Query 78585 GGCGGTCGAGGCGGTCGGCATGGGTGCGACCAGTAG 78620 |||||| ||||| || |||||||| || | ||| || Sbjct 111417 GGCGGTGGAGGCTGTGGGCATGGGAGCCAGCAGCAG 111382 Score = 93.3 bits (102), Expect = 5e-14 Identities = 129/177 (73%), Gaps = 4/177 (2%) Strand=Plus/Plus Query 20602 GGATATCCCCCAGAACCTCAAGGACATTTACAGGACCGTATGGGAAATCCCACAGAAGAG 20661 ||| |||||| | |||| ||| | | || | ||||| ||||||||| | ||||||| Sbjct 111764 GGAGATCCCCGATGACCTGAAGCAGCTGTATAAAACCGTGTGGGAAATCTCCCAGAAGAC 111823 Query 20662 CATCATCGACATGGCGGCCGATCGCGGCGCCTACATCGACCAGTCCCAGTCGCTCAATGT 20721 | || || | ||||| || ||||||||||| |||||||| ||| ||||||||| || | Sbjct 111824 CGTCCTCAAGATGGCAGCAGATCGCGGCGCTTACATCGATCAGAGCCAGTCGCTGAACAT 111883 Query 20722 CTTCATGGAGAATCCGAGCCT--GGCGAAGCTGAGCTCCATGCATATGTACGGCTGG 20776 | ||| | | |||| ||| ||| || |||| | |||||| | ||||| ||| Sbjct 111884 CCACATCGCAGAGCCGA-CCTACGGC-AAACTGACCAGCATGCACTTTTACGGTTGG 111938 Score = 87.8 bits (96), Expect = 2e-12 Identities = 71/86 (83%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 20385 TGCTCGTCGCGCCCATGCCGACCGCCTCGACCGCCCAGATCATGGGGAACAACGAGGCTT 20444 |||| | || |||||||| || ||||| |||||||||||| |||||||||||||| | Sbjct 111383 TGCTGCTGGCTCCCATGCCCACAGCCTCCACCGCCCAGATCCTGGGGAACAACGAGTCCA 111442 Query 20445 TCGAGCCGTACACGACCAACATCTAC 20470 ||||| | ||||| | |||||||||| Sbjct 111443 TCGAGGCCTACACCAGCAACATCTAC 111468 >seq1534 Length=15379 Score = 87.8 bits (96), Expect = 2e-12 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 59989 TAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGC 60048 |||| ||||| |||||| || || ||||||||||| || || | | || ||||||| Sbjct 8789 TAGCCTTTGCTGCCGTGGAGGGTATTTTCTTCTCTGGGTCCTTTGCTTCCATCTTCTGGC 8730 Query 60049 TCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACG 60108 | || || | ||||| ||||| ||||||| |||||||||||||| || | | |||| Sbjct 8729 TGAAGAAAAGGGGCCTGATGCCCGGCCTGACCTTCTCCAACGAGCTCATCAGCAGAGACG 8670 Query 60109 AGG 60111 ||| Sbjct 8669 AGG 8667 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548289400582080