Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Takifugu_20flavidus_20[genbank_20GCA_5F000400755.1_202013-05-30] 34,332 sequences; 378,032,400 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq854 183 3e-41 seq81 172 6e-38 seq1349 116 4e-21 seq681 89.7 6e-13 seq1534 86.0 7e-12 seq1309 82.4 9e-11 >seq854 Length=240782 Score = 183 bits (202), Expect = 3e-41 Identities = 658/1013 (65%), Gaps = 36/1013 (4%) Strand=Plus/Plus Query 80695 TCGAACGACAAGCCCATCATCATGAACACGTCAGCCAGGCCCTGAACGCCGATGGCGATC 80754 ||||||| | | ||| | ||||| |||| |||| ||||| || ||||| | || Sbjct 75025 TCGAACGGGTAACGCATGAGGATGAATGCGTCGGCCAAACCCTGGACACCGATTCCTATT 75084 Query 80755 GGGCGGTGGCGCTTGTTCGATCGCTCGGCCTCCGGAATTGGGTAAAAGTTATTATCGATG 80814 || | |||||||||||| || ||| || || || | ||| || | ||| |||| ||| Sbjct 75085 GGCCTGTGGCGCTTGTTGGACTTCTCAGCTTCGGGCACTGGATAGTAATTAATATCTATG 75144 Query 80815 ACGCGGTTCAGGTTGCGTGTAACAAC--CCGTG-TAACATCATGAAGTTTCTGAAAGTCG 80871 | ||||| ||| | | ||||| || || | ||| || ||||| |||||||| Sbjct 75145 ATCTTGTTCAAGTT---TTTGACAACTACCTTGGTCACAGCAGCTAGTTTTTGAAAGTCA 75201 Query 80872 AATTGGTTCCCCTTCACAAATGCCGGA-AGGCTCAG------GGACGCCAGATTGCACAC 80924 || ||| || || || || | | | | || ||| |||||||| || || Sbjct 75202 AAAG---TCCGCT-CAGCGGTGACGTACATGTTGAGTGCGACGGAGGCCAGATTACAAAC 75257 Query 80925 GGCCACCTCTTCAGCATCTG-TAAACTCGACGATTTCCGTGCACAAATTAGAAGACTTAA 80983 || ||||| || || ||| | | || || ||||| ||||| | ||| ||| | Sbjct 75258 NGCTACCTCGTC-GCTGCTGGTGTATTCCACAATTTCTGTGCATAGATTGCTGCTCTTGA 75316 Query 80984 TTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCAAGCGTCCTTGTAGCACATGTACG 81043 | || ||||| || | |||||| ||| ||||| || || |||||| |||||| | Sbjct 75317 TGGTGCCCAGATTCTGCTGGTTGCTCTTCCTATTGCAGGCATCTTTGTAGAGCATGTATG 75376 Query 81044 GGGTACCGGTCTCGACCTGTGACTTGAGGATGGCGTCCCAAATCTCGCGCGCCTTGACCA 81103 | || ||||| || ||| |||| | |||||| | ||||| || | ||||| |||| Sbjct 75377 GAGTGCCGGTTTCAGTCTGGGACTCTATGATGGCATGCCAAACCTGCTGGGCCTTCACCA 75436 Query 81104 C---CTTGCGGAATTTGCCTTCGGCCACATACTTGGCGTA-AGCTTCGTCGAACTTGGCA 81159 | |||| | |||||| | | || |||| ||| |||||| || |||| | Sbjct 75437 CACGCTTGACGCG---GCCTTCTTTCTCGTATTTGGTGTAGAGCTTC-TCAAACTCCTCC 75492 Query 81160 CCGTGAAGTTCAGTGAGGTCTGGGCACTCGTTAGGGCACATCAGGTGCCAGTCGGTGTCG 81219 || || | || | || || |||| || ||||| || |||||| || Sbjct 75493 CCCCAGCACTCGTTCAGCCCGGGACATTCGTCTGGACACATTAGAGACCAGTCCTGGTTA 75552 Query 81220 TTCTCTACAGCCTTCATGAAAGCGTCAGGGATCCAGAGGGCGGTGAACAGGTCGCGGCAG 81279 |||| || || |||||| |||||||||||| | ||| ||| ||||| | | Sbjct 75553 CTCTCCACCCTCTCCATGAACAAGTCAGGGATCCACATAGCGTAGAAAAGGTCTCTGGCT 75612 Query 81280 CGCGCCTCCTCATCACCCTGGTTGAGGCGCAACTCGAGAAAGTCCATGATGTCCGCATGC 81339 | | |||||| | || ||| |||||| || ||||| | || || | |||| Sbjct 75613 CTCTGCTCCTCTTTTCCAGTGTTCTTCTTCAACTCCAGGAAGTCAAATATATCGGAATGC 75672 Query 81340 CATGGCTCCAGATACACGGCGATCGACCCCTTGCGACGG----CCACCCTGGTTGACGTA 81395 || || ||||| |||| ||||| | |||| || | |||||||||| || || Sbjct 75673 CAGGGTTCCAGGTACATGGCGAAAG-CCCCAGGCCTCTTGTTTCCACCCTGGTCCACATA 75731 Query 81396 ACGGGCAGTCGCGTTAAATACACGCAACATAGGGATGATACCATCTGACTGACCGTTCGT 81455 || || || ||| | || | || ||| |||| | |||| || | || || || Sbjct 75732 GCGTGCGGTGTTGTTGTAAACTCTCAGCATGGGGACAAGCCCATTGGAGTTGCCATTGGT 75791 Query 81456 ACCCACGATACGCGAC--CCCTTGGCGCGCACCTTGCTGATTGAAAGACCGATGCCACCT 81513 || |||| | || ||| | | | | ||||| | | |||||| || || Sbjct 75792 GCCAGCGAT--GTAACTTCCCGTAGATCTGATGCAGCTGACGGCCACACCGATTCCTCCA 75849 Query 81514 GACCACTTTGAAATCTGAGCACACCGGTTCATGGTCTCATAAATTCCCTCGATGCTATCT 81573 | | |||| || || | || ||| | |||| || |||||||| ||||||||||| || Sbjct 75850 GCCGACTTGGAGATGAGCGCGCACTGTTTCAGCGTGTCATAAATGCCCTCGATGCTGTCA 75909 Query 81574 TTTTTCATGTCAAGCAAGAAACAGCTTGACATCTGAGGGCTTTTTGAGCCGGCATTGAAC 81633 | |||||| | |||| ||| ||||| |||| ||| || || || | || ||||| || Sbjct 75910 TCCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGTGGCCTGTTGGTACCTGCATTAAAG 75969 Query 81634 AGTGTTGGGGTCGCGTGAATGAAATAACGGTTTGACATCAGGTCATAGGTTTC 81686 ||||| |||| || || |||| | | ||||| ||||| |||||||| Sbjct 75970 AGTGTCGGGGAGGCATGGGTGAACCACTTCTCTGACAGCAGGTTGTAGGTTTC 76022 >seq81 Length=187384 Score = 172 bits (190), Expect = 6e-38 Identities = 169/218 (78%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| || || || || |||||||| || ||||||||||| ||| | || Sbjct 172948 ATGCAGATCTTTGTAAAAACCCTGACTGGCAAGACCATCACTCTTGAGGTGGAGCCCAGT 173007 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| ||| ||||||| || || ||||||||||| || ||||| || || ||| Sbjct 173008 GACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTGATCAG 173067 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || |||||||| ||||| || || |||| || ||||| | ||||| || Sbjct 173068 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCCGACTACAAC 173127 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCT 27623 |||| ||||| ||||| || || || ||| ||||||| Sbjct 173128 ATCCAGAAGGAGTCCACCCTCCACCTTGTCCTGCGTCT 173165 Score = 168 bits (186), Expect = 8e-37 Identities = 176/231 (76%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| || || || || |||||||| || ||||||||||| ||| | | Sbjct 173632 ATGCAGATCTTTGTAAAAACCCTGACTGGCAAGACCATCACTCTTGAGGTGGAGCCCAGC 173691 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| || ||||||| || || ||||||||||| || ||||| || || ||| Sbjct 173692 GACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTGATCAG 173751 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || |||||||| ||||| || || |||| || ||||| | ||||| || Sbjct 173752 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCCGACTACAAC 173811 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACAA 27636 |||| ||||| ||||| || || || ||| ||||||| | ||||| ||| Sbjct 173812 ATCCAGAAGGAGTCCACCCTCCACCTTGTCCTGCGTCTGAGGGGTGGTCAA 173862 Score = 163 bits (180), Expect = 3e-35 Identities = 167/218 (77%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| || || || || |||||||| || ||||||||||| ||| | | Sbjct 173176 ATGCAGATCTTTGTAAAAACCCTGACTGGCAAGACCATCACTCTTGAGGTGGAGCCCAGC 173235 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| || ||||||| || || ||||||||||| || ||||| || || ||| Sbjct 173236 GACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTGATCAG 173295 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || |||||||| ||||| || || |||| || ||||| | ||||| || Sbjct 173296 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCCGACTACAAC 173355 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCT 27623 |||| ||||| ||||| || || || ||| ||||||| Sbjct 173356 ATCCAGAAGGAGTCCACCCTCCACCTTGTCCTGCGTCT 173393 Score = 163 bits (180), Expect = 3e-35 Identities = 167/218 (77%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| || || || || |||||||| || ||||||||||| ||| | | Sbjct 173404 ATGCAGATCTTTGTAAAAACCCTGACTGGCAAGACCATCACTCTTGAGGTGGAGCCCAGC 173463 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| || ||||||| || || ||||||||||| || ||||| || || ||| Sbjct 173464 GACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTGATCAG 173523 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || |||||||| ||||| || || |||| || ||||| | ||||| || Sbjct 173524 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCCGACTACAAC 173583 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCT 27623 |||| ||||| ||||| || || || ||| ||||||| Sbjct 173584 ATCCAGAAGGAGTCCACCCTCCACCTTGTCCTGCGTCT 173621 >seq1349 Length=1030505 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || ||||| ||||| || || | |||||| || | ||| | || || | | Sbjct 331457 ATGCAGATATTTGTGAAGACCCTGACTGACAAGACCATCAGTCTGCATGTGGAACCCAAT 331398 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || ||||||| ||| | |||| || || || || |||||||| || ||||| || ||| Sbjct 331397 GACAGCATTGTGAATATCAAGGTCAAGATCCATGATAAGGAGGGGATCCCTCCTGATCAG 331338 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || |||||||| ||||| || |||| | | ||||| | ||||| || Sbjct 331337 CAGCGTCTCATCTTTGCTGGCAAGCAGCTGCAGGACGGCCACACCCTCTCTGACTACAAC 331278 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| | ||| || || || || | ||| | |||||| Sbjct 331277 ATCCAGAAGGAGTTCACCCTCCACCTTGTGCTCCGTTTGTCCGGTGG 331231 Score = 107 bits (118), Expect = 2e-18 Identities = 118/157 (75%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || ||||| ||||| || || |||||||| || | ||| | || || | | Sbjct 331685 ATGCAGATATTTGTGAAGACCCTGACTGGCAAGACCATCAGTCTGAATGTGGAACCCAAT 331626 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || ||||||| ||| | |||| || || || || |||||||| || ||||| || ||| Sbjct 331625 GACAGCATTGTGAATATCAAGGTCAAGATCCATGATAAGGAGGGGATCCCTCCTGATCAG 331566 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATG 27562 ||| |||| || | |||||||||||| || ||||||| Sbjct 331565 CAGTGTCTGATCTATGCTGGTAAGCAGCTTGAGGATG 331529 Score = 104 bits (114), Expect = 3e-17 Identities = 145/201 (72%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 27415 TTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTC-AGGTGATAGCAT 27473 ||||| | ||| | || |||||||| || ||||| ||| |||| | | ||| ||| | Sbjct 331904 TTTGTGAGGACCCAGACTGGCAAGACCATCACTCT-GAGAGTGAGACCAAATGACAGCGT 331846 Query 27474 TGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCT 27533 || ||| | || | | || ||| |||||||| || ||||| ||||||||| |||| Sbjct 331845 TGAGAATGTCAAATCCATGATCTGGGATAAGGAGGGGATCCCTCCTGACCAGCAGTGTCT 331786 Query 27534 AATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAA 27593 || | |||||||||||| || ||||| | | |||| | ||||| || |||| || Sbjct 331785 GATCTATGCTGGTAAGCAGCTTGAGGACGGGTGCTCCCTCTCTGACTACAACATCCAGAA 331726 Query 27594 GGAATCCACTCTTCATCTAGT 27614 ||||||||| || || || || Sbjct 331725 GGAATCCACCCTCCACCTTGT 331705 Score = 104 bits (114), Expect = 3e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| | |||||||| || || | ||||| || || | Sbjct 332133 ATGCAGATCTTTGTGAAGACCTACATTGGCAAGACCATCACCGTGGAGGTGGAACCAAAT 332074 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || ||||||| ||| | ||||| || || || ||||||||||| ||||| || | Sbjct 332073 GACAGCATTGAGAATGTCAAGGCCAAGATCTGCGATAAGGAGGGAATCCCTCCTTTCCTG 332014 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || |||||| |||||| || ||||||| | | ||| | ||| || Sbjct 332013 CAGCGTCTGATCTTTGCTACTAAGCAGCTGGAGGATGGAGGCAACCTCTCCACCTACAAC 331954 Query 27586 GTCCAAAAGGAATCCAC 27602 |||| ||||| ||||| Sbjct 331953 ATCCAGAAGGAGTCCAC 331937 >seq681 Length=269650 Score = 89.7 bits (98), Expect = 6e-13 Identities = 114/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 80948 ACTCGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTG 81007 |||| || || || ||||||| ||| || || || || |||||||| | |||||| Sbjct 110552 ACTCTACAATCTCTGTGCACAGATTGCTGGATTTGATGGTGCCCAGGTTCTGCTGGTTGC 110493 Query 81008 ACTTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACT 81067 ||| |||||| |||||||||||| |||||| || || ||||| || || |||| Sbjct 110492 TCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTATGGTGTGCCGGTTTCTGTTTGAGACT 110433 Query 81068 TGAGGATGGCGTCCCAAATCTCGCGCGCCTTGACCAC 81104 || |||||||| ||| | || | ||||| ||||| Sbjct 110432 CGATGATGGCGTACCACAGCTGCTGGGCCTTCACCAC 110396 >seq1534 Length=15379 Score = 86.0 bits (94), Expect = 7e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 64725 AGCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATTTTCTGGCT 64784 ||| ||||| ||||| || |||||||| |||||||| || ||| || |||||||| Sbjct 8788 AGCCTTTGCTGCCGTGGAGGGTATTTTCTTCTCTGGGTCCTTTGCTTCCATCTTCTGGCT 8729 Query 64785 AAAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATCTCTCGGGACGA 64844 || || ||||||||||||| || ||| | || || |||||||| ||| | ||||| Sbjct 8728 GAAGAAAAGGGGCCTGATGCCCGGCCTGACCTTCTCCAACGAGCTCATCAGCAGAGACGA 8669 Query 64845 GG 64846 || Sbjct 8668 GG 8667 >seq1309 Length=53454 Score = 82.4 bits (90), Expect = 9e-11 Identities = 96/127 (76%), Gaps = 2/127 (2%) Strand=Plus/Plus Query 32125 ACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAATAACCTGAACTTACTCGAGCCA 32184 ||||| |||||| | || ||||| ||||| || || ||| ||||| | || |||| Sbjct 34749 ACCATCGTCAACTTGGCCCAGAATTTTGTGGGCAGCAACAACTTGAACATCCTGCAGCC- 34807 Query 32185 TCTGGA-CAGTTTGGGACCCGGCTCGCCGGTGGCAAGGATGCTGCGAGCTCCCGTTACAT 32243 ||||| |||||||| || || || || ||||| |||||||| ||| | |||||||| Sbjct 34808 TCTGGGTCAGTTTGGTACTCGCATCAATGGAGGCAAAGATGCTGCCAGCCCTCGTTACAT 34867 Query 32244 CTTCACC 32250 ||||||| Sbjct 34868 CTTCACC 34874 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570065651291840