Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Takifugu_20flavidus_20[genbank_20GCA_5F000400755.1_202013-05-30] 34,332 sequences; 378,032,400 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq81 181 2e-40 seq1349 113 1e-19 seq559 98.7 2e-15 seq1204 86.0 1e-11 >seq81 Length=187384 Score = 181 bits (200), Expect = 2e-40 Identities = 169/215 (79%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||||||||| || |||||||| || |||||||| || || | ||||| | |||||| Sbjct 173159 AGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCT 173100 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| || ||||| || | || || ||||| |||| |||||||||||| Sbjct 173099 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCC 173040 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| ||||| || || ||||||||| | || ||||| |||||||| ||| Sbjct 173039 TGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCCACCTCAAGAGTGATGGTC 172980 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || || || || || |||||||| | |||||| || Sbjct 172979 TTGCCAGTCAGGGTTTTTACAAAGATCTGCATGTT 172945 Score = 179 bits (198), Expect = 9e-40 Identities = 167/212 (79%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||||||||| || |||||||| || |||||||| || || | ||||| | |||||| Sbjct 173387 AGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCT 173328 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| || ||||| || | || || ||||| |||| |||||||||||| Sbjct 173327 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCC 173268 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| |||||||| || |||||||| | || ||||| |||||||| ||| Sbjct 173267 TGGATCTTGGCCTTCACGTTCTCAATGGTGTCGCTGGGCTCCACCTCAAGAGTGATGGTC 173208 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || || |||||||| | |||||| Sbjct 173207 TTGCCAGTCAGGGTTTTTACAAAGATCTGCAT 173176 Score = 179 bits (198), Expect = 9e-40 Identities = 167/212 (79%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||||||||| || |||||||| || |||||||| || || | ||||| | |||||| Sbjct 173615 AGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCT 173556 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| || ||||| || | || || ||||| |||| |||||||||||| Sbjct 173555 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCC 173496 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| |||||||| || |||||||| | || ||||| |||||||| ||| Sbjct 173495 TGGATCTTGGCCTTCACGTTCTCAATGGTGTCGCTGGGCTCCACCTCAAGAGTGATGGTC 173436 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || || |||||||| | |||||| Sbjct 173435 TTGCCAGTCAGGGTTTTTACAAAGATCTGCAT 173404 Score = 179 bits (198), Expect = 9e-40 Identities = 167/212 (79%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||||||||| || |||||||| || |||||||| || || | ||||| | |||||| Sbjct 173843 AGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCT 173784 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| || ||||| || | || || ||||| |||| |||||||||||| Sbjct 173783 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCC 173724 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| |||||||| || |||||||| | || ||||| |||||||| ||| Sbjct 173723 TGGATCTTGGCCTTCACGTTCTCAATGGTGTCGCTGGGCTCCACCTCAAGAGTGATGGTC 173664 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || || |||||||| | |||||| Sbjct 173663 TTGCCAGTCAGGGTTTTTACAAAGATCTGCAT 173632 >seq1349 Length=1030505 Score = 113 bits (124), Expect = 1e-19 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || |||||||| || ||| |||| || |||||||| || || | ||||| || || Sbjct 331246 AGCACAAGGTGGAGGGTGAACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGTGGCCGTCC 331305 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 | |||||||||||| || ||||| || || || || |||||||| | || ||||| || Sbjct 331306 TGCAGCTGCTTGCCAGCAAAGATGAGACGCTGCTGATCAGGAGGGATCCCCTCCTTATCA 331365 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || | || | ||| ||||| | ||| || | ||| |||| ||| Sbjct 331366 TGGATCTTGACCTTGATATTCACAATGCTGTCATTGGGTTCCACATGCAGACTGATGGTC 331425 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || | || || ||||| ||||| | |||||| Sbjct 331426 TTGTCAGTCAGGGTCTTCACAAATATCTGCAT 331457 Score = 91.5 bits (100), Expect = 3e-13 Identities = 144/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || |||||||| || ||||| || || |||||||| || || | |||| | || || Sbjct 331702 AGCACAAGGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAGAGGGAGCACCCGTCC 331761 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || |||||||| || || |||| || | || ||||||||||| | || ||||| ||| Sbjct 331762 TCAAGCTGCTTACCAGCATAGATCAGACACTGCTGGTCAGGAGGGATCCCCTCCTTATCC 331821 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCA-GAGCTTTCAACCTCGAGAGTGATCGT 211081 |||| | ||| || || || | | ||||| | | ||| ||| |||||||| || Sbjct 331822 CAGATCATGGATTTGACATTCTCAACGCTGTCATTTGGTCTCACTCTC-AGAGTGATGGT 331880 Query 211082 CTTTCCCGTGAGAGTCTTTACAAA 211105 ||| || || | ||| | ||||| Sbjct 331881 CTTGCCAGTCTGGGTCCTCACAAA 331904 Score = 89.7 bits (98), Expect = 1e-12 Identities = 144/207 (70%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 210908 AAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAG 210967 |||||| | |||||||| || |||||||| || | ||| | | |||||| ||||| Sbjct 331927 AAGGTGGATGGTGGACTCCTTCTGGATGTTGTAGGTGGAGAGGTTGCCTCCATCCTCCAG 331986 Query 210968 CTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGAT 211027 |||||| || ||||| || || || || |||||| | ||| ||||| || ||| Sbjct 331987 CTGCTTAGTAGCAAAGATCAGACGCTGCAGGAAAGGAGGGATTCCCTCCTTATCGCAGAT 332046 Query 211028 CTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCC 211087 ||| || || || || ||| ||||| ||| ||||| | ||||| ||||| || Sbjct 332047 CTTGGCCTTGACATTCTCAATGCTGTCATTTGGTTCCACCTCCACGGTGATGGTCTTGCC 332106 Query 211088 CGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| ||||| | |||||| Sbjct 332107 AATGTAGGTCTTCACAAAGATCTGCAT 332133 >seq559 Length=398206 Score = 98.7 bits (108), Expect = 2e-15 Identities = 142/194 (73%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 139822 GGAAGAGGAGGACAATCTGCTCTGCGTTTTGAAAGACTTCGAAAGGAAAAGAGGCACAAC 139881 || ||||||||||| ||||| |||||||||| |||| ||| ||| ||||| |||||| Sbjct 324208 GGCAGAGGAGGACAGTCTGCCCTGCGTTTTGCTCGACTGAGAATGGAGAAGAGACACAAC 324267 Query 139882 TACTTGAGAAAAGTTGCAGAGAACGCAATACAG-TGTTT-TAT-CAAAGACAACAAGTGT 139938 || |||| ||||| || |||| || | ||| ||||| | | ||| || | |||| | Sbjct 324268 TATGTGAGGAAAGTGGCTGAGACGGCTGTCCAGCTGTTTGTGTCCAACGATA--AAGT-T 324324 Query 139939 TTTGTTTCTGGTATTGTTTTGGCAGGTTCCGCAGAGTTCAAGACAAAGCTCCTGGAATCT 139998 ||| | || || || ||||| ||||| || || |||||||| ||||| | ||| Sbjct 324325 AATGTGGCCGGAATGGTCTTGGCTGGTTCTGCCGACTTCAAGACCGAGCTCAGCCAGTCT 324384 Query 139999 GACTTTTTTGACCC 140012 ||| | ||||| || Sbjct 324385 GACATGTTTGATCC 324398 >seq1204 Length=196151 Score = 86.0 bits (94), Expect = 1e-11 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 211011 CCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCG 211070 |||||||| |||||||||||| || || |||||||| ||||| | || |||||| Sbjct 162795 CCTTCCTTATCCTGGATCTTTGCCTTGACATTTTCGATCGTGTCGCTGGGCTCCACCTCG 162854 Query 211071 AGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || ||||| ||||||||||| | ||||| || || | |||||| || Sbjct 162855 AGGGTGATGGTCTTTCCCGTCAACGTCTTCACGAAGATCTGCATGTT 162901 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1158642113667180