Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Takifugu_20rubripes_20[refseq_20GCF_5F000180615.1_202011-10-13] 6,835 sequences; 391,484,715 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq11 600 1e-166 seq15 125 8e-24 >seq11 Length=11238946 Score = 600 bits (664), Expect = 1e-166 Identities = 1308/1946 (67%), Gaps = 23/1946 (1%) Strand=Plus/Plus Query 53085 TATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGAT 53144 |||| || || || || ||||| || ||||| || | || | ||||| || || | Sbjct 5178229 TATTTTTCATGTCCTCGTTCCACAACCCCCTCTCCGTCAGGTCTTTGAGGAGGTGAGGGT 5178288 Query 53145 TAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTT 53204 | || | || || || || |||| || || || ||||| || || ||||| || | || Sbjct 5178289 TGACAATCTGGAACTCCCCGGACAGGACCCTGCGGGTGTAGATGTTGCTGGTGTAGGCTT 5178348 Query 53205 CCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCA 53264 | | |||||| || || |||| || || || ||||| || || ||||| || || | | Sbjct 5178349 CGATAGACTCGTTGTTGCCCAGGATCTGGGCGGTTGAGGCGGTGGGCATCGGGGCTAAGA 5178408 Query 53265 ATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAG-AGGTTCCCAATTCCAA 53323 | ||| || || | |||| | |||||| || ||||| || |||| | ||||| Sbjct 5178409 GCAGACTGTTCCTCACGCCGTGCTTGGCGATTTTTTCCTTTAGCAGCTTCC--AGTCCAA 5178466 Query 53324 -AGATCCGACGGTACAACNNNNNNNNNNNNNNNT--TGTAGAATACCGTTACTGGCGTAC 53380 || || | || | | | || || || || || ||| | Sbjct 5178467 CAGGTCGGTGGG--CGTCTTCTCCCACATGTCGTACTGAAGGATGCCCTTGCTGACCGGG 5178524 Query 53381 GATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAAT 53440 || ||| | || || |||||||| || || |||| || || || |||||||| | Sbjct 5178525 GAGCCTTCGTAGGTTTCGTATGGCCCGAGCTCGGCAGCCAGCTCGCAGCTCGCCTCGAGG 5178584 Query 53441 GCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCA 53500 || |||| || ||||| |||||||||| | || ||| || ||||| |||| || Sbjct 5178585 GCTGCGTAGTAGATGGTCTCGAAGATCTGGGTGTTCAGAAGCTGAGCTTCGGGGCTTTCG 5178644 Query 53501 AATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGT 53560 || || ||| | ||| || || ||||| || || || || ||||| || || || || Sbjct 5178645 AACGGGTAACGCATGAGGATGAATGCGTCGGCCAAACCCTGGACACCGATTCCTATTGGC 5178704 Query 53561 CTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATT 53620 || || | ||| || || | |||||||| || | ||||| |||||||||||||| || Sbjct 5178705 CTGTGGCGCTTGTTGGACTTCTCAGCTTCGGGCACTGGATAGTAATTAATATCTATGATC 5178764 Query 53621 TTATTGAGGTTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATTGT 53680 || || | |||| |||||| ||| ||| |||| | ||||| |||| ||||| || Sbjct 5178765 TTGTTCAAGTTTTTGACAACTACCTTGGTCACAGCAGCTAGTTTTTGAAAGTCAAAA-GT 5178823 Query 53681 CC----ATCTATTACAAACATGTTCAATGCAATAGATGCCAGATTACAAACGGCTACCTC 53736 || | | | || ||||||| | ||| | || |||||||||||||| |||||||| Sbjct 5178824 CCGCTCAGCGGTGACGTACATGTTGAGTGCGACGGAGGCCAGATTACAAACCGCTACCTC 5178883 Query 53737 ATTAGCATCCGCA-TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTA 53795 | || | | |||| | || || ||||| ||||| || | ||||||||| || | Sbjct 5178884 GTC-GCTGCTGGTGTATTCCACAATTTCTGTGCATAGATTGCTGCTCTTGATGGTGCCCA 5178942 Query 53796 AATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAG 53855 ||| || || || ||||| | || || ||||| || || || ||| |||| || || | Sbjct 5178943 GATTCTGCTGGTTGCTCTTCCTATTGCAGGCATCTTTGTAGAGCATGTATGGAGTGCCGG 5179002 Query 53856 TTTCAATCTGGGATTCTATAATCGCTTTCCAGACGACACGAGCCTTTATTATAGATTTGT 53915 ||||| ||||||| ||||| || || | ||| || | ||||| | | | ||| Sbjct 5179003 TTTCAGTCTGGGACTCTATGATGGCATGCCAAACCTGCTGGGCCTTCACCACACGCTTGA 5179062 Query 53916 ATCTCTTTTCTCTTTCGTATA--GTGTATACAATCGTTCAAACTCGTCTCCCCAAACATT 53973 | |||| | |||||| ||||| | || |||||||| || ||||| | Sbjct 5179063 CGCGGCCTTCTTTCTCGTATTTGGTGTAGAGCTTC--TCAAACTCCTCCCCCCAGCACTC 5179120 Query 53974 GTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCG 54033 | || || |||||||| || |||||||| | ||||| || || | || ||| | Sbjct 5179121 ATTCAGCCCGGGACATTCGTCTGGACACATTAGAGACCAGTCCTGGTTACTCTCCACCCT 5179180 Query 54034 TTTCATAAAGAGATCAGGAATCCAAAGAGC-TATAAATAGATCTCTGGTTCTATGTTCCT 54092 ||||| || | ||||| ||||| | | | || ||| || ||||||| ||| || |||| Sbjct 5179181 CTTCATGAACAAGTCAGGGATCCACATACCGTAGAAA-AGGTCTCTGGCTCTCTGCTCCT 5179239 Query 54093 CGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCA 54152 | ||||| || ||||| || | || ||||| | | ||||| |||||||| ||||||| Sbjct 5179240 CTTTTCCAGTGTTCTTCTTCAACTCCAGGAAGTCAAATATATCGGAATGCCAGGGTTCCA 5179299 Query 54153 AGTATATGGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGT 54212 ||| |||| | | | ||||||| |||||||| ||||| || | || | ||||||| Sbjct 5179300 GGTACATGGCGAAAGCCCCAGGCCTCTTGTTTCCACCCTGGTCCACATAGCGTGCGGTGT 5179359 Query 54213 TATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATAT 54272 | || |||||||||| ||| || | || |||||||| |||||||| || | ||| | Sbjct 5179360 TGTTGTAAACTCTCAGCATGGGGACAAGCCCATTGGAGTTGCCATTGGTGCCAGCGATGT 5179419 Query 54273 AGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGA 54332 | ||||| | | | || || | | | ||| || || || ||| || |||| Sbjct 5179420 AACTTCCCGTAGATCTGATGCAGCTGACGGCCACACCGATTCCTCCAGCCGACTTGGAGA 5179479 Query 54333 TTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAA 54392 | | ||||| |||| | ||| ||||| |||||||| || || |||||| ||||| | Sbjct 5179480 TGAGCGCGCACTGTTTCAGCGTGTCATAAATGCCCTCGATGCTGTCATCCTTCATGGCGA 5179539 Query 54393 GTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAG 54452 | || || ||||| |||| || | | | || || |||||||| | || || || | Sbjct 5179540 GCAGGAAGCAGCTGGACAGCTGTGGCCTGTTGGTACCTGCATTAAAGAGTGTCGGGGAGG 5179599 Query 54453 CGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCC 54512 | || || ||||| || || || || || ||||| || || || |||| || ||||| Sbjct 5179600 CATGGGTGAACCACTTCTCTGACAGCAGGTTGTAGGTTTCAATCGCTGCATCAATATCTG 5179659 Query 54513 ATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGT 54572 |||||| || || || | || | ||| | ||||||||| |||| || | | ||| Sbjct 5179660 TTTGATGGATCCCCACAGAAACCCTCATGAGCATGTGCTGCGGTCGCTCGGCCACTTTGC 5179719 Query 54573 TGTTTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAA 54632 ||| || |||| || |||||| |||| |||||||| || || | |||||||||| Sbjct 5179720 CGTTGATCTTCAACAGGTAGGACCGCTCCAGGGTTTTAAAGCCGAAGAAATTGTATGAAA 5179779 Query 54633 AGTCTCGTTCGTAAATAATAACTGAGTTGAGTTTATCCTTATATTTGTTAACTACATCCA 54692 | || || || || || || | ||||| || || || | | | || | || | Sbjct 5179780 AATCACGGTCATATATTATGGCCGAGTTCAGGCGGTCTTTGTTCTGGAGGACGATGTCAA 5179839 Query 54693 TGGTAATACTT-GAAATAATCGGAGAATGTTTCCCATTTTTAGGATTGACATAGTTAAAT 54751 || | ||| || | || ||||| || | |||| || || | ||||| | Sbjct 5179840 GCGT-CTCCTTGGAGACCATGGGAGAGTGACGCTTATTTAGTGGGTTTATGTAGTTGTAC 5179898 Query 54752 AAATCCTTCATCACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCT 54811 | |||| |||||| ||||| || | || ||||| || ||||| || ||||| ||||| Sbjct 5179899 AGGTCCTCCATCACGTCACTGAACACCTTCTTTGTCTCCTTGTGCAGGTTTGAGACGGCG 5179958 Query 54812 ATTCTAGCGGCTAGAATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCG 54871 || | || || || ||||| || || || |||| || || ||| || | || || Sbjct 5179959 ATCCGTGCAGCGAGGATGGCGTAGTCAGGGTGTTTGGTGGTCAGAGTAGCAGAGATCTCT 5180018 Query 54872 GCTGTCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTC 54931 |||| || ||||| | || ||||| || |||||||| || | || ||||| |||||| Sbjct 5180019 GCTGCCAAGGTGTCGAGCTCCACCGTGGTGACTCCATTGTACAAACCCTGGATCACCTTC 5180078 Query 54932 ATAGCTATTTTAATAGGATCTATATGATCAGTGTTTAAGCCATAACATAATTTTCTAATA 54991 || | || | || || | | |||| ||||| ||| || || | || || Sbjct 5180079 ATGGTAATCTGGGCTGGGTCCACAAAGTCAGCGTTTAGGCCGTAGCACAGCTTCTGGATG 5180138 Query 54992 CGAGATGTGATTTTATCAAACATGAC 55017 ||||| ||||||||||| |||||||| Sbjct 5180139 CGAGAGGTGATTTTATCGAACATGAC 5180164 Score = 114 bits (126), Expect = 2e-20 Identities = 128/171 (75%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 52875 TCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 52934 |||| ||||| || ||||| || ||||||||| ||| | || ||||| || ||||| | Sbjct 5177937 TCCAGCCGTAGAAGTGCATGCTGGTTAGTTTGCCATAGTTGGGCTCTGCGATGTGGATGT 5177996 Query 52935 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 52994 ||| ||| || || || ||||||||||| || | ||| || ||||| || ||||| || | Sbjct 5177997 TCAGAGACTGGCTCTGGTCGATGAAGGCGCCGCGGTCGGCTGCCATCTTGATGATGGTTT 5178056 Query 52995 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 53045 | || | |||||||| | ||||||||| | |||| | || | ||||| Sbjct 5178057 TCTGGGAGATTTCCCACACAGTTTTATACAGCTGCTTCACGTCGTTTGGAA 5178107 >seq15 Length=11516971 Score = 125 bits (138), Expect = 8e-24 Identities = 144/193 (75%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 54741 CATAGTTAAATAAATCCTTCATCACTTCACTAAATAGtttttttGTTTCTTTGTGTAGAT 54800 || || || ||||| ||| | || ||||||| | ||| || || ||||||||||||| Sbjct 9314569 CACAGCTATATAAAGCCTGTCTTAC--CACTAAAGACTTTCTTGGTCTCTTTGTGTAGAT 9314626 Query 54801 TTGATACGGCTATTCTAGCGGCTAGAATGGCATAATCCGGATGTTGTGTAGTACAAGTGG 54860 | || ||||| || | || || || ||||||||||| |||| || || ||| ||||| Sbjct 9314627 TGGACACGGCGATCCGTGCAGCCAGGATGGCATAATCAGGATATTTGGTGGTAAGAGTGG 9314686 Query 54861 CTGCTATTTCGGCTGTCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTT 54920 |||| | || |||| ||||||||||| || || || || |||||| | || | || | Sbjct 9314687 CTGCAGTCTCTGCTGCCAGAGTGTCCAGCTCCACTGTGGTGACTCCACTGTACAGGCCCT 9314746 Query 54921 GGATAACCTTCAT 54933 |||| |||||||| Sbjct 9314747 GGATCACCTTCAT 9314759 Score = 111 bits (122), Expect = 2e-19 Identities = 102/129 (79%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 54028 CACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATG 54087 |||||||||||||||||| || || ||||| | ||| | || |||||||||| || || Sbjct 9313262 CACTCGTTTCATAAAGAGGTCTGGGATCCACAAAGCGAAGAACAGATCTCTGGCCCTCTG 9313321 Query 54088 TTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 54147 ||||| || || || |||||||| || || |||||||| | | ||| ||||||||||| Sbjct 9313322 CTCCTCTTTGCCAGTGTTCTTTTTCAGCTCCAGGAACGCAAACACATCGGAATGCCACGG 9313381 Query 54148 TTCCAAGTA 54156 |||| ||| Sbjct 9313382 CTCCAGGTA 9313390 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593670873910800