Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Takifugu_20rubripes_20[refseq_20GCF_5F000180615.1_202011-10-13] 6,835 sequences; 391,484,715 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq15 145 8e-30 seq6 113 5e-20 seq1226 111 2e-19 seq1106 96.9 4e-15 >seq15 Length=11516971 Score = 145 bits (160), Expect = 8e-30 Identities = 171/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || |||||||| || || ||||| |||||||| | || || || ||| | Sbjct 2477200 ATGCAGATCTTTGTAAAAACCCTGACTGGCAAGACCATCACTCTTGAGGTGGAGCCCAGC 2477141 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| | |||| || || | ||||| || ||||| ||| | || || Sbjct 2477140 GACACCATTGAGAACG-TGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTGATCA 2477082 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | || |||| || ||||| |||||||| || | ||||||||| ||||||||| Sbjct 2477081 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCCGACTACAA 2477022 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||||| |||| || || || || |||| ||||||| ||| Sbjct 2477021 CATCCAGAAGGAGTCCACCCTCCACCTTGTCCTGCGTCTGAGGGGGGGC 2476973 Score = 145 bits (160), Expect = 8e-30 Identities = 171/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || |||||||| || || ||||| |||||||| | || || || ||| | Sbjct 2477428 ATGCAGATCTTTGTAAAAACCCTGACTGGCAAGACCATCACTCTTGAGGTGGAGCCCAGC 2477369 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| | |||| || || | ||||| || ||||| ||| | || || Sbjct 2477368 GACACCATTGAGAACG-TGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTGATCA 2477310 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | || |||| || ||||| |||||||| || | ||||||||| ||||||||| Sbjct 2477309 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCCGACTACAA 2477250 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||||| |||| || || || || |||| ||||||| ||| Sbjct 2477249 CATCCAGAAGGAGTCCACCCTCCACCTTGTCCTGCGTCTGAGGGGGGGC 2477201 Score = 143 bits (158), Expect = 3e-29 Identities = 170/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || |||||||| || || ||||| |||||||| | || || || ||| | Sbjct 2476972 ATGCAGATCTTTGTAAAAACCCTGACTGGCAAGACCATCACTCTTGAGGTGGAGCCCAGC 2476913 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| | |||| || || | ||||| || ||||| ||| | || || Sbjct 2476912 GACACCATTGAGAACG-TGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTGATCA 2476854 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | || |||| || ||||| |||||||| || | ||||||||| ||||||||| Sbjct 2476853 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCCGACTACAA 2476794 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||||| |||| || || || || |||| ||||||| || Sbjct 2476793 CATCCAGAAGGAGTCCACCCTCCACCTTGTCCTGCGTCTGAGGGGTGG 2476746 Score = 138 bits (152), Expect = 1e-27 Identities = 169/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || || |||||||| || || ||||| |||||||| | || || || || Sbjct 2477659 AACATGCAGATCTTTGTAAAAACCCTGACTGGCAAGACCATCACTCTTGAGGTGGAGCCC 2477600 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | |||| | | | | | |||| || || | ||||| || ||||| ||| | || Sbjct 2477599 AGTGACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTGAT 2477540 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| | || |||| || ||||| |||||||| || | ||||||||| ||||||| Sbjct 2477539 CAGCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCCGACTAC 2477480 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||||||| |||| || || || || |||| ||||||| ||| Sbjct 2477479 AACATCCAGAAGGAGTCCACCCTCCACCTTGTCCTGCGTCTGAGGGGGGGC 2477429 >seq6 Length=9412079 Score = 113 bits (124), Expect = 5e-20 Identities = 159/222 (72%), Gaps = 6/222 (3%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| ||||| || || || || || | ||| ||||||| | | || ||| ||| Sbjct 6657186 ATGCAGATATTTGTGAAGACCCTGACTGACAAGACCATCAGTCTGAATGTGGAACCCAAT 6657245 Query 40750 GACAGC---GTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 |||||| ||| | | |||||| || || | || || ||||| ||||| | || Sbjct 6657246 GACAGCATTGTGAATA---TCAAGGTCAAGATCCATGATAAGGAGGGGATCCCTCCTGAT 6657302 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| || ||||||| || ||||| |||||| | |||| | ||||||| |||||| Sbjct 6657303 CAGCAGCGTCTCATCTTTGCTGGCAAGCAGCTGCAGGACGGCCACACCCTCTCTGACTAC 6657362 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTG 40908 ||||||||||||||| ||| || || || ||| | || ||| Sbjct 6657363 AACATCCAGAAGGAGTTCACCCTCCACCTTGTGCTCCGTTTG 6657404 Score = 96.9 bits (106), Expect = 4e-15 Identities = 156/223 (70%), Gaps = 6/223 (3%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| ||||| || || || || || ||||| ||||||| | | || ||| ||| Sbjct 6656958 ATGCAGATATTTGTGAAGACCCTGACTGGCAAGACCATCAGTCTGAATGTGGAACCCAAT 6657017 Query 40750 GACAGC---GTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 |||||| ||| | | |||||| || || | || || ||||| ||||| | || Sbjct 6657018 GACAGCATTGTGAATA---TCAAGGTCAAGATCCATGATAAGGAGGGGATCCCTCCTGAT 6657074 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| | || ||||| || || || ||||| || || | | || ||||| | |||| Sbjct 6657075 CAGCAGTGTCTGATCTATGCTGGTAAGCAGCTTGAGGATGGGTGCGCCCTCTCCACCTAC 6657134 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGA 40909 |||||||||| | || |||| || || || ||| | || |||| Sbjct 6657135 AACATCCAGATGAAGTCCACCCTCCACCTTGTGCTCCGTTTGA 6657177 Score = 86.0 bits (94), Expect = 6e-12 Identities = 95/127 (75%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842 || || ||||| ||||| | |||||||| | || ||||| || || || ||||| || Sbjct 6656823 GATAAGGAGGGGATCCCTCCTGACCAGCAGTGTCTGATCTATGCTGGTAAGCAGCTTGAG 6656882 Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902 |||| | || ||||| ||||||||||||||||| || |||| || || || ||| | Sbjct 6656883 GACGGGTGCTCCCTCTCTGACTACAACATCCAGAATGAATCCACCCTCCACCTTGTGCTC 6656942 Query 40903 CGCTTGA 40909 || |||| Sbjct 6656943 CGTTTGA 6656949 >seq1226 Length=411779 Score = 111 bits (122), Expect = 2e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 117032 GGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCC 117091 || |||||| |||| ||||| || ||||| ||||| | ||||| || || || || Sbjct 204509 GGAGAGCGCGTGGTAGCCTTTGCTGCCGTGGAGGGTATTTTCTTCTCTGGGTCCTTTGCT 204568 Query 117092 GCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTC 117151 |||| || ||||| |||||| | ||||| |||||||||||||| ||| |||||||||| Sbjct 204569 TCCATCTTCTGGCTGAAGAAAAGGGGCCTGATGCCCGGCCTGACCTTCTCCAACGAGCTC 204628 Query 117152 ATCTCCAGGGACGAGG 117167 ||| ||| ||||||| Sbjct 204629 ATCAGCAGAGACGAGG 204644 Score = 96.9 bits (106), Expect = 4e-15 Identities = 79/96 (82%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 116800 TCTGGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTT 116859 || ||| ||||||||| | |||||||||||||| | ||||| |||| ||||| || || Sbjct 204107 TCAGGTGGAGCGTTTCACCCAGGAGGTGCAGGTCACGGAGGCCAGGTGTTTCTATGGGTT 204166 Query 116860 TCAGATCGCCATGGAGAACGTGCACTCGGAAATGTA 116895 |||||||||||||||||| | ||||| || ||||| Sbjct 204167 CCAGATCGCCATGGAGAACATCCACTCTGAGATGTA 204202 Score = 91.5 bits (100), Expect = 2e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 || || |||||| ||||||||||| || || || || ||||| || | |||| |||| Sbjct 203688 GAACCACTGCTGAAGGAGAACCCCCGTCGCTTTGTCATCTTCCCTATCAAGTACCAGGAC 203747 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGT 116688 || |||| |||||||| ||||| ||||| || |||||||||| || ||||| Sbjct 203748 ATCTGGCAGATGTACAAGAAGGCAGAGGCATCATTCTGGACCGCAGAAGAGGT 203800 >seq1106 Length=3230 Score = 96.9 bits (106), Expect = 4e-15 Identities = 79/96 (82%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 116800 TCTGGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTT 116859 || ||| ||||||||| | |||||||||||||| | ||||| |||| ||||| || || Sbjct 2999 TCAGGTGGAGCGTTTCACCCAGGAGGTGCAGGTCACGGAGGCCAGGTGTTTCTATGGGTT 3058 Query 116860 TCAGATCGCCATGGAGAACGTGCACTCGGAAATGTA 116895 |||||||||||||||||| | ||||| || ||||| Sbjct 3059 CCAGATCGCCATGGAGAACATCCACTCTGAGATGTA 3094 Score = 91.5 bits (100), Expect = 2e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 || || |||||| ||||||||||| || || || || ||||| || | |||| |||| Sbjct 2580 GAACCACTGCTGAAGGAGAACCCCCGTCGCTTTGTCATCTTCCCTATCAAGTACCAGGAC 2639 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGT 116688 || |||| |||||||| ||||| ||||| || |||||||||| || ||||| Sbjct 2640 ATCTGGCAGATGTACAAGAAGGCAGAGGCATCATTCTGGACCGCAGAAGAGGT 2692 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515175180959600