Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Takifugu_20rubripes_20[refseq_20GCF_5F000180615.1_202011-10-13]
6,835 sequences; 391,484,715 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq11 520 8e-143
seq15 129 5e-25
>seq11
Length=11238946
Score = 520 bits (576), Expect = 8e-143
Identities = 1088/1611 (68%), Gaps = 31/1611 (2%)
Strand=Plus/Plus
Query 22388 ATGATCAAATTTTTAATCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGA 22447
|||| | |||||| || ||||||||||| || | | |||| ||||||| ||
Sbjct 5178222 ATGAGCTTATTTTTCATGTCCTCGTTCCACAACCCCCTCTCCGTCAGGTCTTTGAGGAGG 5178281
Query 22448 TGACGGTTCACCACTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTG 22507
||| |||| || | || ||||| ||||||| ||| | ||| ||| |||||| |||
Sbjct 5178282 TGAGGGTTGACAATCTGGAACTCCCCGGACAGGACCCTGCGGGTGTAGATGTTGCTGGTG 5178341
Query 22508 AACGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGC 22567
| | ||||| ||| || ||||| ||||| ||||| ||||| || ||||| ||||||||
Sbjct 5178342 TAGGCTTCGATAGACTCGTTGTTGCCCAGGATCTGGGCGGTTGAGGCGGTGGGCATCGGG 5178401
Query 22568 GCCAACAGTAGCGAGTTTCTCAAGCCGTGCTTTGAAATTTTACTCTTGAGCATCGACCAG 22627
|| || || || ||| |||| ||||||||| | ||||| ||| |||| | ||||
Sbjct 5178402 GCTAAGAGCAGACTGTTCCTCACGCCGTGCTTGGCGATTTTTTCCTTTAGCAGCTTCCAG 5178461
Query 22628 TCCCACAGATCGGACGGCGTCACATTGTCCCACATATCGTATTGCAACACGCCGCGACTC 22687
||| |||| |||| |||||| || |||||||| ||||| || | | ||| ||
Sbjct 5178462 TCCAACAGGTCGGTGGGCGTC---TTCTCCCACATGTCGTACTGAAGGATGCCCTTGCTG 5178518
Query 22688 GCCGGGCTGCCTTCGTACGTTTCGTACGGACCATATATCG-CGGCAAGTTCGCAGCTCGC 22746
||||| ||||||||| |||||||| || || | ||| | || || |||||||||||
Sbjct 5178519 ACCGGGGAGCCTTCGTAGGTTTCGTATGGCCCG-AGCTCGGCAGCCAGCTCGCAGCTCGC 5178577
Query 22747 CTCCAACGCGCCGTAATATATAGTCTCGAAGATTTTCTTGTTCA-ATTCGGCGGCGGCGA 22805
||| | || |||| || || ||||||||||| | |||||| | | | | | ||
Sbjct 5178578 CTCGAGGGCTGCGTAGTAGATGGTCTCGAAGATCTGGGTGTTCAGAAGCTGAG-CTTCGG 5178636
Query 22806 CGCTTTCGTACGGCATACGCATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATAC 22865
||||||| |||| |||||| | | ||| ||||| |||| |||||| || || || |
Sbjct 5178637 GGCTTTCGAACGGGTAACGCATGAGGATGAATGCGTCGGCCAAACCCTGGACACCGATTC 5178696
Query 22866 CGATCGGTCGGTTTTTCAGATTCGACACTTTTGCCTCGGGCAAAGGATACCAATTCGAAT 22925
| || || | || | || ||| | || ||||||| ||||| |||| ||
Sbjct 5178697 CTATTGGCCTGTGGCGCTTGTTGGACTTCTCAGCTTCGGGCACTGGATAGTAATTAATAT 5178756
Query 22926 CGATTGTTCTGTTCAAGTTTCTGGTCACAATTTTCGTTATNNNNNNNNNNNNNTCAAAGT 22985
| || | ||||||||||| || || | || || | | |||||
Sbjct 5178757 CTATGATCTTGTTCAAGTTTTTGACAACTACCTTGGTCACAGCAGCTAGTTTTTGAAAGT 5178816
Query 22986 CGTAAACGCCCGATT----GTACAACAAACTTGTTGACGGCGATCGAGGCAAGATTGCAT 23041
| ||| | ||| | || || || |||||| |||| ||||| ||||| ||
Sbjct 5178817 C--AAAAGTCCGCTCAGCGGTG--ACGTACATGTTGAGTGCGACGGAGGCCAGATTACAA 5178872
Query 23042 ACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTT 23101
|| || |||||||| || ||||| || |||||||| || ||||||||||| | |||
Sbjct 5178873 ACCGCTACCTCGTCGCTGCTGGTGTATTCCACAATTTCTGTGCATAGATTGCTGCTCTTG 5178932
Query 23102 ATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTAC 23161
|| ||||||| ||| ||||||||| || | |||||| | ||| ||||||||||||||
Sbjct 5178933 ATGGTGCCCAGATTCTGCTGGTTGCTCTTCCTATTGCAGGCATCTTTGTAGAGCATGTAT 5178992
Query 23162 GGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACATAGTCTGAGCGTGAACA 23221
|| ||||| || || ||| ||||| ||||| || |||| | ||| || | ||
Sbjct 5178993 GGAGTGCCGGTTTCAGTCTGGGACTCTATGATGGCATGCCAAACCTGCTGGGCCTTCACC 5179052
Query 23222 CGTCGCACGTACCTGCCTTCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCG 23281
||| | | |||||||| |||||| || ||| | | ||||| || | ||
Sbjct 5179053 ACACGCTTGACGCGGCCTTCTTTCTCGTATTTGGTGTAGAGCTTCTCAAACTCCTCCCCC 5179112
Query 23282 TAACAGTCGGCCAGGCCGGGCGATTGCATC-GGACACATGAGACTCCACATTGAGTCATT 23340
| || || ||| ||||| ||| | || |||||||| ||| ||| || | |
Sbjct 5179113 CAGCACTCATTCAGCCCGGGACATT-CGTCTGGACACATTAGAGACCAGTCCTGGTTACT 5179171
Query 23341 TTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCG 23400
|| || | |||| || | || || ||||| | | ||||||| || || | ||| |
Sbjct 5179172 CTCCACCCTCTTCATGAACAAGTCAGGGATCCACATACCGTAGAAAAGGTCTCTGGCTCT 5179231
Query 23401 CACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCA 23460
| ||||||||| || |||||||| ||||| |||| ||||| || | || | ||||||
Sbjct 5179232 CTGCTCCTCTTTTCCAGTGTTCTTCTTCAACTCCAGGAAGTCAAATATATCGGAATGCCA 5179291
Query 23461 CGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACG 23520
|| || ||||| | ||| || || || || ||||| || || ||||| || || || ||
Sbjct 5179292 GGGTTCCAGGTACATGGCGAAAGCCCCAGGCCTCTTGTTTCCACCCTGGTCCACATAGCG 5179351
Query 23521 GGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCC 23580
|| ||||||||||| ||||| ||||| || || || || ||||| ||| |||
Sbjct 5179352 TGCGGTGTTGTTGTAAACTCTCAGCATGGGGACAAGCCCATTGGAGTTGCCATTGGTGCC 5179411
Query 23581 CGCCA---CACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCC 23637
|| | ||| || | | || | | | ||| | ||| || ||||| |
Sbjct 5179412 AGCGATGTAACT---TCCCGTAGATCTGATGCAGCTGACGGCCACACCGATTCCTCCAGC 5179468
Query 23638 CGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTC 23697
||| || || || | |||||| |||||||| ||||| || ||||||||||||||||| ||
Sbjct 5179469 CGACTTGGAGATGAGCGCGCACTGTTTCAGCGTGTCATAAATGCCCTCGATGCTGTCATC 5179528
Query 23698 TTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAG 23757
|| | |||| || ||| || |||| || | || ||| | || || ||
Sbjct 5179529 CTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGTGGCCTGTTGGTACCTGCATTAAAGAG 5179588
Query 23758 TGTCGGGCTGGCGTGCGTAAAGTATCCA-TTC---GACATTAGATTGTACGTGTCGATGG 23813
||||||| ||| || || || ||| ||| |||| || ||||| || || || |
Sbjct 5179589 TGTCGGGGAGGCATGGGTGAA----CCACTTCTCTGACAGCAGGTTGTAGGTTTCAATCG 5179644
Query 23814 CGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTC 23873
| |||||||| || | || || || | | || | ||| | ||||| || ||||
Sbjct 5179645 CTGCATCAATATCTGTTTGATGGATCCCCACAGAAACCCTCATGAGCATGTGCTGCGGTC 5179704
Query 23874 TCTCGACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAA 23933
|||| || |||||| || || ||||| || || || | || |||||||| || |
Sbjct 5179705 GCTCGGCCACTTTGCCGTTGATCTTCAACAGGTAGGACCGCTCCAGGGTTTTAAAGCCGA 5179764
Query 23934 AATAGTCATAGTTAAAGTCACGATCGTGCACTATGGCCGAATTCAAACGGT 23984
| | | || ||| ||||| || | | ||||||||| |||| ||||
Sbjct 5179765 AGAAATTGTATGAAAAATCACGGTCATATATTATGGCCGAGTTCAGGCGGT 5179815
>seq15
Length=11516971
Score = 129 bits (142), Expect = 5e-25
Identities = 124/159 (78%), Gaps = 0/159 (0%)
Strand=Plus/Plus
Query 23340 TTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGC 23399
|||| || ||| ||||||| || || || ||||| | |||| ||||||| || | ||| |
Sbjct 9313258 TTTCCACTCGTTTCATAAAGAGGTCTGGGATCCACAAAGCGAAGAACAGATCTCTGGCCC 9313317
Query 23400 GCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCC 23459
| |||||||||||| ||||||||||||| |||| || | ||||| || | |||||
Sbjct 9313318 TCTGCTCCTCTTTGCCAGTGTTCTTTTTCAGCTCCAGGAACGCAAACACATCGGAATGCC 9313377
Query 23460 ACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTAT 23498
||||||| ||||| || ||||| || || ||||||| ||
Sbjct 9313378 ACGGCTCCAGGTACACAGCAAAGGCTCCAGGTCTCTGAT 9313416
Score = 118 bits (130), Expect = 9e-22
Identities = 121/158 (77%), Gaps = 0/158 (0%)
Strand=Plus/Plus
Query 23047 CACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGT 23106
|||||| |||||| ||||||||||||||| || || || |||||||| | || || ||
Sbjct 9312813 CACCTCATCTTTGCTCGTGTACTCTACAATCTCTGTGCACAGATTGCTGGATTTGATGGT 9312872
Query 23107 GCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGT 23166
||||| || ||||||||| || | ||||| | ||||||||||||||||| || ||
Sbjct 9312873 GCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTATGGTGT 9312932
Query 23167 GCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACA 23204
||| || || || ||||||||||| || |||||
Sbjct 9312933 GCCGGTTTCTGTTTGAGACTCGATGATGGCGTACCACA 9312970
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445728314833200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |