Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Takifugu_20rubripes_20[refseq_20GCF_5F000180615.1_202011-10-13] 6,835 sequences; 391,484,715 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq11 616 2e-171 seq15 114 2e-20 seq1226 93.3 5e-14 >seq11 Length=11238946 Score = 616 bits (682), Expect = 2e-171 Identities = 1325/1975 (67%), Gaps = 23/1975 (1%) Strand=Plus/Plus Query 62294 CTGAATGGATCCACCATCTACCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCT 62353 |||||||||||| | | || | | |||| || || || || ||||| || || Sbjct 5178200 CTGAATGGATCCGTTGTGAGCGATGAGCTTATTTTTCATGTCCTCGTTCCACAACCCCCT 5178259 Query 62354 CTCGGTTAAAACTCTAAGGAGATGCGGGTTAACTACTTGGAATTCTCCAGACAATACTCT 62413 ||| || | || | ||||| || ||||| || | ||||| || || |||| || || Sbjct 5178260 CTCCGTCAGGTCTTTGAGGAGGTGAGGGTTGACAATCTGGAACTCCCCGGACAGGACCCT 5178319 Query 62414 CCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGC 62473 || ||||| || || ||||| || | ||| | ||||| || || |||| || || || Sbjct 5178320 GCGGGTGTAGATGTTGCTGGTGTAGGCTTCGATAGACTCGTTGTTGCCCAGGATCTGGGC 5178379 Query 62474 AGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGAT 62533 ||||| || || ||||| || || | | | ||| || || | |||| | ||| Sbjct 5178380 GGTTGAGGCGGTGGGCATCGGGGCTAAGAGCAGACTGTTCCTCACGCCGTGCTTGGCGAT 5178439 Query 62534 TTTATCTTTTAGATGTTCCCAATTCCAAAGATCCGACGG-------TACAACANNNNNNN 62586 ||| || ||||| | | ||| | | | || || | || | | ||| Sbjct 5178440 TTTTTCCTTTAGCAGCTTCCAGTCCAACAGGTCGGTGGGCGTCTTCTCCCACATGTCG-- 5178497 Query 62587 NNNNATATTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCATATGGTCCTT 62646 || || || || || || ||| | || ||| | || || || ||||| || Sbjct 5178498 -----TACTGAAGGATGCCCTTGCTGACCGGGGAGCCTTCGTAGGTTTCGTATGGCCCGA 5178552 Query 62647 CCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCAAAGATCT 62706 || |||| || | || |||||||| | || |||| || ||||| || ||||||| Sbjct 5178553 GCTCGGCAGCCAGCTCGCAGCTCGCCTCGAGGGCTGCGTAGTAGATGGTCTCGAAGATCT 5178612 Query 62707 TCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGT 62766 | || ||| || ||||| ||||| || || || ||| | ||| || || |||| Sbjct 5178613 GGGTGTTCAGAAGCTGAGCTTCGGGGCTTTCGAACGGGTAACGCATGAGGATGAATGCGT 5178672 Query 62767 CCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTT 62826 | || || || || ||||| || || || || || || | ||| || || | ||||||| Sbjct 5178673 CGGCCAAACCCTGGACACCGATTCCTATTGGCCTGTGGCGCTTGTTGGACTTCTCAGCTT 5178732 Query 62827 CTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGA 62886 | || | ||||| |||||||||||||| || || || | ||| |||||| ||| ||| Sbjct 5178733 CGGGCACTGGATAGTAATTAATATCTATGATCTTGTTCAAGTTTTTGACAACTACCTTGG 5178792 Query 62887 CCACATCCTTCAGTTTGAGAAAATCAAAT---CGCCCATCTATTACAAACATGTTCAATG 62943 |||| | ||||| |||| ||||| ||| || | | || ||||||| | || Sbjct 5178793 TCACAGCAGCTAGTTTTTGAAAGTCAAAAGTCCGCTCAGCGGTGACGTACATGTTGAGTG 5178852 Query 62944 CAACAGATGCCAGATTACACACGGCTACCTCATTAGCATCCGCA-TATTGTATTATCTCA 63002 | || || ||||||||||| || |||||||| | || | | |||| | || || Sbjct 5178853 CGACGGAGGCCAGATTACAAACCGCTACCTCGTC-GCTGCTGGTGTATTCCACAATTTCT 5178911 Query 63003 GTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACAC 63062 ||||| ||||| || | |||||| || || | ||| || || || ||||| | || || Sbjct 5178912 GTGCATAGATTGCTGCTCTTGATGGTGCCCAGATTCTGCTGGTTGCTCTTCCTATTGCAG 5178971 Query 63063 GCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTC 63122 ||||| || || || ||| ||||||| || |||||| |||| || ||||| || || | | Sbjct 5178972 GCATCTTTGTAGAGCATGTATGGAGTGCCGGTTTCAGTCTGGGACTCTATGATGGCATGC 5179031 Query 63123 CAGACGACTCGAGCCTTTATTATAGATTTGTATCTCCTTTCTCTTTCGTATAGAGTATAC 63182 || || | ||||| | | | ||| | | |||| | |||||| || || Sbjct 5179032 CAAACCTGCTGGGCCTTCACCACACGCTTGACGCGGCCTTCTTTCTCGTATTTGGTGTAG 5179091 Query 63183 AATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACACATC 63242 | || ||||| || ||||| | | || | |||||||| || |||||||| Sbjct 5179092 AGCTTCTCAAACTCCTCCCCCCAGCACTCATTCAGCCCGGGACATTCGTCTGGACACATT 5179151 Query 63243 AACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGC- 63301 | ||||| || || | || ||| | ||||| || | ||||| ||||| | | | Sbjct 5179152 AGAGACCAGTCCTGGTTACTCTCCACCCTCTTCATGAACAAGTCAGGGATCCACATACCG 5179211 Query 63302 TATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAA 63361 || ||| || ||||| | ||| || ||||| ||||| || ||||| || | || ||||| Sbjct 5179212 TAGAAA-AGGTCTCTGGCTCTCTGCTCCTCTTTTCCAGTGTTCTTCTTCAACTCCAGGAA 5179270 Query 63362 CGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTT 63421 | | ||||| |||||||| ||||||| ||| ||||| | | | ||||||| ||||| Sbjct 5179271 GTCAAATATATCGGAATGCCAGGGTTCCAGGTACATGGCGAAAGCCCCAGGCCTCTTGTT 5179330 Query 63422 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63481 ||| ||||| || | || | |||||||| || |||||||||| ||| || | || || Sbjct 5179331 TCCACCCTGGTCCACATAGCGTGCGGTGTTGTTGTAAACTCTCAGCATGGGGACAAGCCC 5179390 Query 63482 GTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAATTGA 63541 || || | |||||||| || | ||| || | ||| | | | || || | | Sbjct 5179391 ATTGGAGTTGCCATTGGTGCCAGCGATGTAACTTCCCGTAGATCTGATGCAGCTGACGGC 5179450 Query 63542 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGAT 63601 | ||| ||||| || ||| || ||||| | ||||| |||| | ||||||||| || Sbjct 5179451 CACACCGATTCCTCCAGCCGACTTGGAGATGAGCGCGCACTGTTTCAGCGTGTCATAAAT 5179510 Query 63602 GCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGT 63661 ||| || ||||| ||||| ||||| || || || ||||| |||| || | | | Sbjct 5179511 GCCCTCGATGCTGTCATCCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGTGGCCTGTT 5179570 Query 63662 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 63721 || || |||||||| | || || || || || || ||||| || || || || || || Sbjct 5179571 GGTACCTGCATTAAAGAGTGTCGGGGAGGCATGGGTGAACCACTTCTCTGACAGCAGGTT 5179630 Query 63722 GTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 63781 ||| || ||||| |||| || ||||| |||||| || || || | || | ||| | Sbjct 5179631 GTAGGTTTCAATCGCTGCATCAATATCTGTTTGATGGATCCCCACAGAAACCCTCATGAG 5179690 Query 63782 CATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63841 ||||||||| |||| || | | |||| ||| || ||||||| |||||| |||| Sbjct 5179691 CATGTGCTGCGGTCGCTCGGCCACTTTGCCGTTGATCTTCAACAGGTAGGACCGCTCCAG 5179750 Query 63842 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAG 63901 |||||||| || || | ||||||||||| || || || || || || |||| || || Sbjct 5179751 GGTTTTAAAGCCGAAGAAATTGTATGAAAAATCACGGTCATATATTATGGCCGAGTTCAG 5179810 Query 63902 CTTATCCTTATATTTGTTAACTATATCCATGGTAATACTT-GAAATAATCGGAGAATGTT 63960 || || | | | || || || | || | ||| || | || ||||| || Sbjct 5179811 GCGGTCTTTGTTCTGGAGGACGATGTCAAGCGT-CTCCTTGGAGACCATGGGAGAGTGAC 5179869 Query 63961 TCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGttttt 64020 | |||| || || | |||||| | | ||||||||||| ||||| || | || | Sbjct 5179870 GCTTATTTAGTGGGTTTATGTAGTTGTACAGGTCCTCCATCACGTCACTGAACACCTTCT 5179929 Query 64021 ttGTTTCCTTGTGTAGATTTGATATGGCTATTCTGGCGGCTAGAATGGCATAATCCGGAT 64080 |||| |||||||| || ||||| | ||| || | || || || ||||| || || || | Sbjct 5179930 TTGTCTCCTTGTGCAGGTTTGAGACGGCGATCCGTGCAGCGAGGATGGCGTAGTCAGGGT 5179989 Query 64081 GTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTGTTA 64140 ||| || || ||| || | || || ||||||| ||||| | || ||||| || | Sbjct 5179990 GTTTGGTGGTCAGAGTAGCAGAGATCTCTGCTGCCAAGGTGTCGAGCTCCACCGTGGTGA 5180049 Query 64141 CTCCATTATATATTCCTTGAATAACCTTCATAGCTATTTTAATAGGATCTATATGATCCG 64200 ||||||| || | || || || |||||||| | || | || || | | || | Sbjct 5180050 CTCCATTGTACAAACCCTGGATCACCTTCATGGTAATCTGGGCTGGGTCCACAAAGTCAG 5180109 Query 64201 TGTTTAAGCCATAGCACAATTTTCTAATACGAGACGTGATTTTATCAAACATGAC 64255 ||||| ||| ||||||| || || ||||| ||||||||||| |||||||| Sbjct 5180110 CGTTTAGGCCGTAGCACAGCTTCTGGATGCGAGAGGTGATTTTATCGAACATGAC 5180164 Score = 114 bits (126), Expect = 2e-20 Identities = 128/171 (75%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 62113 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 62172 |||| ||||| || ||||| || ||||||||| ||| | || ||||| || ||||| | Sbjct 5177937 TCCAGCCGTAGAAGTGCATGCTGGTTAGTTTGCCATAGTTGGGCTCTGCGATGTGGATGT 5177996 Query 62173 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 62232 ||| ||| || || || ||||||||||| || | ||| || ||||| || ||||| || | Sbjct 5177997 TCAGAGACTGGCTCTGGTCGATGAAGGCGCCGCGGTCGGCTGCCATCTTGATGATGGTTT 5178056 Query 62233 TTTGTGCAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 62283 | || | |||||||| | ||||||||| | |||| | || | ||||| Sbjct 5178057 TCTGGGAGATTTCCCACACAGTTTTATACAGCTGCTTCACGTCGTTTGGAA 5178107 >seq15 Length=11516971 Score = 114 bits (126), Expect = 2e-20 Identities = 125/166 (75%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 64006 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATATGGCTATTCTGGCGGCTAGAA 64065 ||||||| | ||| || || || ||||||||||| || | ||| || | || || || | Sbjct 9314594 CACTAAAGACTTTCTTGGTCTCTTTGTGTAGATTGGACACGGCGATCCGTGCAGCCAGGA 9314653 Query 64066 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 64125 |||||||||| |||| || || ||| ||||||||| | || |||||||||||||||| Sbjct 9314654 TGGCATAATCAGGATATTTGGTGGTAAGAGTGGCTGCAGTCTCTGCTGCCAGAGTGTCCA 9314713 Query 64126 ATTCTACCGTTGTTACTCCATTATATATTCCTTGAATAACCTTCAT 64171 || || || || |||||| | || | || || || |||||||| Sbjct 9314714 GCTCCACTGTGGTGACTCCACTGTACAGGCCCTGGATCACCTTCAT 9314759 Score = 107 bits (118), Expect = 2e-18 Identities = 112/147 (76%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 63266 CACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATG 63325 |||||||||||||||||| || || ||||| | ||| | || |||||||| | || || Sbjct 9313262 CACTCGTTTCATAAAGAGGTCTGGGATCCACAAAGCGAAGAACAGATCTCTGGCCCTCTG 9313321 Query 63326 TTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 63385 ||||| || || || |||||||| || || |||||||| | | ||| ||||||||||| Sbjct 9313322 CTCCTCTTTGCCAGTGTTCTTTTTCAGCTCCAGGAACGCAAACACATCGGAATGCCACGG 9313381 Query 63386 TTCCAAGTATATGGCCATAACTCCAGG 63412 |||| ||| | || | ||||||| Sbjct 9313382 CTCCAGGTACACAGCAAAGGCTCCAGG 9313408 >seq1226 Length=411779 Score = 93.3 bits (102), Expect = 5e-14 Identities = 93/121 (77%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||||||||| || || | ||||| || || || || |||||||| ||||| | || | Sbjct 204644 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATCAGGCCCCTTTTCT 204585 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | ||||| || |||||||| || || || || ||||| || || || || |||||||||| Sbjct 204584 TCAGCCAGAAGATGGAAGCAAAGGACCCAGAGAAGAAAATACCCTCCACGGCAGCAAAGG 204525 Query 33724 C 33724 | Sbjct 204524 C 204524 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629763789958800