Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Takifugu_20rubripes_20[refseq_20GCF_5F000180615.1_202011-10-13] 6,835 sequences; 391,484,715 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq11 163 3e-35 >seq11 Length=11238946 Score = 163 bits (180), Expect = 3e-35 Identities = 912/1440 (63%), Gaps = 31/1440 (2%) Strand=Plus/Plus Query 37123 AGGTGTGGATTTACAACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTA 37182 ||||| || || |||| ||| || || || || | || || | || || || ||||| Sbjct 5178279 AGGTGAGGGTTGACAATCTGGAACTCCCCGGACAGGACCCTGCGGGTGTAGATGTTGCTG 5178338 Query 37183 GTATATGGTTCAATGGACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATT 37242 || || | ||| || ||||| || || | | || || | || || || || ||||| Sbjct 5178339 GTGTAGGCTTCGATAGACTCGTTGTTGCCCAGGATCTGGGCGGTTGAGGCGGTGGGCATC 5178398 Query 37243 GGTGCTATTAGAAGGCTATTTCTCAATCCATGTGTATTAATTCTCTTTTTTAGTTCATTC 37302 || |||| || || || || |||| || || | ||| | | ||||| ||| Sbjct 5178399 GGGGCTAAGAGCAGACTGTTCCTCACGCCGTGCTTGGCGATTTTTTCCTTTAGCAGCTTC 5178458 Query 37303 CAATCCCATAAATCTGTTGGGTTCTTTAACCACATATCATATTGTAGAATACCTTTACTC 37362 || ||| | | || || || |||| |||||| || || || || || || || || Sbjct 5178459 CAGTCCAACAGGTCGGTGGGCGTCTTCTCCCACATGTCGTACTGAAGGATGCCCTTGCTG 5178518 Query 37363 GCTGGAGAATCGTTATATGTCTCATAAGGTCCGTAAATTTTAGCTAGTTCGCAACTAGAT 37422 | || || | | || || || || || ||| ||| || ||||| || | Sbjct 5178519 ACCGGGGAGCCTTCGTAGGTTTCGTATGGCCCGAGCTCGGCAGCCAGCTCGCAGCTCGCC 5178578 Query 37423 TCTAGTGCGGCATAATATATTGTTTCGAAAATTTGTATATTTAATATTTTTGCTTCTTCG 37482 || || || || || || || || ||||| || || | || | | | ||||| | Sbjct 5178579 TCGAGGGCTGCGTAGTAGATGGTCTCGAAGATCTGGGTGTTCAGAAGCTGAGCTTCGGGG 5178638 Query 37483 CTATCGAATGCATAGCCCAATAATATAAACACATCAGCCAAACCCTGAACACCGATACCT 37542 || ||||| | || | || | || || | || ||||||||||| |||||||| ||| Sbjct 5178639 CTTTCGAACGGGTAACGCATGAGGATGAATGCGTCGGCCAAACCCTGGACACCGATTCCT 5178698 Query 37543 ATGGGTCTATGTTTCTTATTAGATCTAGACGATTCTATCACTGGATAATAATTGATATCT 37602 || || || || ||| || || | | ||| ||||||||| ||||| |||||| Sbjct 5178699 ATTGGCCTGTGGCGCTTGTTGGACTTCTCAGCTTCGGGCACTGGATAGTAATTAATATCT 5178758 Query 37603 ATTATTTTATTTAGATTTTTAACTAGTATTTTCGTAATTATTCTCAACTTGTCGAA---C 37659 || || || || | ||||| || | || || || | | | | || | ||| | Sbjct 5178759 ATGATCTTGTTCAAGTTTTTGACAACTACCTTGGTCAC-AGCAGCTAGTTTTTGAAAGTC 5178817 Query 37660 ATAAATACGTTA-----TTATTAACAAATTTACT-CAACGAAATAGATCCTAGATTACAT 37713 | || | || | | | ||| || | | | ||| || | |||||||| Sbjct 5178818 AAAAGTCCGCTCAGCGGTGACGTACATGTTGAGTGCGACG-----GAGGCCAGATTACAA 5178872 Query 37714 ACAGCAACTTCATCTTCGTTACTAAATTGTATAATCTCTGTACAGAGATTACTCGATCTA 37773 || || || || || | | | ||| | ||| ||||| || ||||| || | ||| Sbjct 5178873 ACCGCTACCTCGTCGCTGCTGGTGTATTCCACAATTTCTGTGCATAGATTGCT-GCTCTT 5178931 Query 37774 -ATTGTTCCCAAATTGCTTTGATTGGATTTTTTATTACAAGAATCTTTATATAGTATATA 37832 || || |||| ||| || ||| || |||| || | |||||| || || || || Sbjct 5178932 GATGGTGCCCAGATTCTGCTGGTTGCTCTTCCTATTGCAGGCATCTTTGTAGAGCATGTA 5178991 Query 37833 CGGCGTTCCTTGTTCTATTTGAGCCTCGATAATAGATTTCCATAAACTTCTTG--CTTTA 37890 || || || ||| | || | ||| || || | | ||| || || || | ||| | Sbjct 5178992 TGGAGTGCCGGTTTCAGTCTGGGACTCTATGATGGCATGCCA-AACCTGCTGGGCCTTCA 5179050 Query 37891 ACGATCGCTTTAAttttt-ttCTTTGTTTCGTATTCTATATATAATTTGTTAAAATCATT 37949 | ||||| | |||||| | |||||| | || | || | ||| || | Sbjct 5179051 CCACACGCTTGACGCGGCCTTCTTTCT--CGTATTTGGTGTAGAGCTTCTCAAACTCCTC 5179108 Query 37950 CCCCCATACATCGCAT--AATCCTGGACATTCGCATGGACACATTAGAGACCATTCTTCA 38007 |||||| || | ||| | || ||||||||| |||||||||||||||||| || | Sbjct 5179109 CCCCCAG-CA-CTCATTCAGCCCGGGACATTCGTCTGGACACATTAGAGACCAGTCCTGG 5179166 Query 38008 TCTTTTTCTACGCGTTCCATAAATAAATCAGGTACCCATAATGCAGTAAATAAA-TCTTT 38066 | | || || | | ||| || || ||||| | ||| | | | ||| | || ||| | Sbjct 5179167 TTACTCTCCACCCTCTTCATGAACAAGTCAGGGATCCACA-TACCGTAGAAAAGGTCTCT 5179225 Query 38067 GGTTCTATATTCTTCGTTCCCTACATTCTTTCTTAAGCTT-AGAAAATCGAATATATCAG 38125 || ||| | || || || || ||||| ||| | || || || || |||||||| | Sbjct 5179226 GGCTCTCTGCTCCTCTTTTCCAGTGTTCTT-CTTCAACTCCAGGAAGTCAAATATATCGG 5179284 Query 38126 CGTGCCATGGTTCTATATAAATCGACATTGCTCCTGGTCTTTTATCACCTCCCTGATTAA 38185 ||||| ||||| | || || | | || || || || || | || ||||| | | Sbjct 5179285 AATGCCAGGGTTCCAGGTACATGGCGAAAGCCCCAGGCCTCTTGTTTCCACCCTGGTCCA 5179344 Query 38186 TATATCTAACTGTGTTATTATATATTCTTAACATAGGTACTATACCATTAGATTTGCCGT 38245 ||| | | ||||| || || | ||| | ||| || || | ||||| || ||||| | Sbjct 5179345 CATAGCGTGCGGTGTTGTTGTAAACTCTCAGCATGGGGACAAGCCCATTGGAGTTGCCAT 5179404 Query 38246 TTATACCGGATATATAAGTACCCTTAGCTCGTATATTACTTATCGACAATCCTATTCCAC 38305 | | || | || ||| | ||| ||| || || || | | || || ||||| | Sbjct 5179405 TGGTGCCAGCGATGTAACTTCCCGTAGATCTGATGCAGCTGACGGCCACACCGATTCCTC 5179464 Query 38306 CTGCATGTTTTGATATTAAAGCGCATTGTTTTAACGTATCAAATATACCTTCTATACTGT 38365 | || || || || | ||||| ||||| | ||| ||| | || || || || |||| Sbjct 5179465 CAGCCGACTTGGAGATGAGCGCGCACTGTTTCAGCGTGTCATAAATGCCCTCGATGCTGT 5179524 Query 38366 CATCCTTTATTGGTAGTATAAAACAACTAGACATTTGAGGCAATGGAGTTCCGGCGTTAA 38425 ||||||| || | || | || || || |||| || ||| || || || |||| Sbjct 5179525 CATCCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGTGGCCTGTTGGTACCTGCATTAA 5179584 Query 38426 ATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATAATTATATGTTTCTATTA 38485 | | ||| || || ||||| ||||||| || || |||| || || ||||| || Sbjct 5179585 AGAGTGTCGGGGAGGCATGGGTGAACCACTTCTCTGACAGCAGGTTGTAGGTTTCAATCG 5179644 Query 38486 CATCATCTATATCACCGCCGTGAATACCTAGAGATACCCTCATTAGCATATGTTGTGGTC 38545 | |||| ||||| || || || | ||| |||||||| ||||| || || |||| Sbjct 5179645 CTGCATCAATATCTGTTTGATGGATCCCCACAGAAACCCTCATGAGCATGTGCTGCGGTC 5179704 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468484770412400