Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Takifugu_20rubripes_20[refseq_20GCF_5F000180615.1_202011-10-13] 6,835 sequences; 391,484,715 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq11 621 5e-173 seq15 129 8e-25 >seq11 Length=11238946 Score = 621 bits (688), Expect = 5e-173 Identities = 1340/1992 (67%), Gaps = 23/1992 (1%) Strand=Plus/Plus Query 71049 CTGAATGGATCCACCATCTGCAATAATCCTATTTTTGATCTCTTCATTCCATAATTTTCT 71108 |||||||||||| | || || | | ||||||| || || || ||||| || || Sbjct 5178200 CTGAATGGATCCGTTGTGAGCGATGAGCTTATTTTTCATGTCCTCGTTCCACAACCCCCT 5178259 Query 71109 CTCGGTTAAAACTCTAAGGAGATGAGGATTAACTACTTGAAATTCTCCAGACAATACTCT 71168 ||| || | || | ||||| ||||| || || | || || || || |||| || || Sbjct 5178260 CTCCGTCAGGTCTTTGAGGAGGTGAGGGTTGACAATCTGGAACTCCCCGGACAGGACCCT 5178319 Query 71169 ACGAGTGTAAATATTACTGGTATACGGTTCCACTGACTCATTATTTCCCAAAATTTGAGC 71228 || ||||| || || ||||| || | ||| | ||||| || || |||| || || || Sbjct 5178320 GCGGGTGTAGATGTTGCTGGTGTAGGCTTCGATAGACTCGTTGTTGCCCAGGATCTGGGC 5178379 Query 71229 AGTTGATGCAGTCGGCATAGGTGCCACCAATAGACTATTTCTAAGACCATGTGATCGG-- 71286 ||||| || || ||||| || || | | ||||| || || | || ||| | || Sbjct 5178380 GGTTGAGGCGGTGGGCATCGGGGCTAAGAGCAGACTGTTCCTCACGCC--GTGCTTGGCG 5178437 Query 71287 ATTTTATCTTTTAG-AGATTCCCAATTCCAA-AGATCCGATGGTACAACNNNNNNNNNNN 71344 ||||| || ||||| || |||| | ||||| || || | || Sbjct 5178438 ATTTTTTCCTTTAGCAGCTTCC--AGTCCAACAGGTCGGTGGGCGTCTTCTCCCACATGT 5178495 Query 71345 NNNNNNNNNNNATGCCGTTACTAGCGTATGATCCTGCATATGTATCGTATGGTCCTTCTT 71404 ||||| || || | || ||| | || || |||||||| || | Sbjct 5178496 CGTACTGAAGGATGCCCTTGCTGACCGGGGAGCCTTCGTAGGTTTCGTATGGCCCGAGCT 5178555 Query 71405 TTTCGGCTAGTTCACAACTCGCCTCTAATGCTCCATAATAAATGGTTTCGAAAATCTTCT 71464 | || || || || |||||||| | ||| | || || ||||| ||||| |||| Sbjct 5178556 CGGCAGCCAGCTCGCAGCTCGCCTCGAGGGCTGCGTAGTAGATGGTCTCGAAGATCTGGG 5178615 Query 71465 TATTGAGATCTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTG 71524 | || ||| || ||||| ||||| || || || ||| | ||| || || ||||| | Sbjct 5178616 TGTTCAGAAGCTGAGCTTCGGGGCTTTCGAACGGGTAACGCATGAGGATGAATGCGTCGG 5178675 Query 71525 CTAATCCTTGAACGCCAATACCGATAGGTCTGTGTCTCTTATTAGAAATTTCAGCTTCTG 71584 | || || || || || || || || || ||||| | ||| || || | |||||||| | Sbjct 5178676 CCAAACCCTGGACACCGATTCCTATTGGCCTGTGGCGCTTGTTGGACTTCTCAGCTTCGG 5178735 Query 71585 GAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACTATTACTTTGACCA 71644 | | ||||| |||||||||||||| || || || | ||| |||| | ||| ||| || Sbjct 5178736 GCACTGGATAGTAATTAATATCTATGATCTTGTTCAAGTTTTTGACAACTACCTTGGTCA 5178795 Query 71645 CATCCTTTAGTTTGAGAAAATCAAATCTCC---CATCTATTACAAACACGTTCAAGGCAA 71701 || | |||||| |||| ||||| ||| || | | || ||| ||| | || | Sbjct 5178796 CAGCAGCTAGTTTTTGAAAGTCAAAAGTCCGCTCAGCGGTGACGTACATGTTGAGTGCGA 5178855 Query 71702 CAGATGCCAGATTACAAACGGCTACCTCATTAGCATC-GGCATATTGTATAATTTCAGTG 71760 | || |||||||||||||| |||||||| | || | || |||| | |||||| ||| Sbjct 5178856 CGGAGGCCAGATTACAAACCGCTACCTCGTC-GCTGCTGGTGTATTCCACAATTTCTGTG 5178914 Query 71761 CAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCA 71820 || ||||| || | ||||||||| || | ||| || || || ||||| | || || ||| Sbjct 5178915 CATAGATTGCTGCTCTTGATGGTGCCCAGATTCTGCTGGTTGCTCTTCCTATTGCAGGCA 5178974 Query 71821 TCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAG 71880 || || || || || | ||||| || |||||| |||| || ||||| || || | ||| Sbjct 5178975 TCTTTGTAGAGCATGTATGGAGTGCCGGTTTCAGTCTGGGACTCTATGATGGCATGCCAA 5179034 Query 71881 ACGACTCGAGCCTTTATTATATTCTTGTATCTCTTTTCTCTTTCGTATT--GTGTATATA 71938 || | ||||| | | | |||| | |||| | ||||||| ||||| | Sbjct 5179035 ACCTGCTGGGCCTTCACCACACGCTTGACGCGGCCTTCTTTCTCGTATTTGGTGTAGAGC 5179094 Query 71939 ATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGG-ACATTCATTCGGACACATC 71997 || || ||||| || ||||| ||| | | | || || |||||| | |||||||| Sbjct 5179095 TTC--TCAAACTCCTCCCCCCA-GCACTCATTCAGCCCGGGACATTCGTCTGGACACATT 5179151 Query 71998 AATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGC- 72056 | ||||| || | | | || | ||||| || | ||||| ||||| | | | Sbjct 5179152 AGAGACCAGTCCTGGTTACTCTCCACCCTCTTCATGAACAAGTCAGGGATCCACATACCG 5179211 Query 72057 TATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAA 72116 || ||| || ||||||| ||| |||||||| ||||| || ||||| || | || ||||| Sbjct 5179212 TAGAAA-AGGTCTCTGGCTCTCTGCTCCTCTTTTCCAGTGTTCTTCTTCAACTCCAGGAA 5179270 Query 72117 CGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTT 72176 | | ||||| |||||||| ||||||| ||| ||||| | | | || |||| ||||| Sbjct 5179271 GTCAAATATATCGGAATGCCAGGGTTCCAGGTACATGGCGAAAGCCCCAGGCCTCTTGTT 5179330 Query 72177 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 72236 ||| ||||| || | || | |||||||| || |||||||||| ||| || | || || Sbjct 5179331 TCCACCCTGGTCCACATAGCGTGCGGTGTTGTTGTAAACTCTCAGCATGGGGACAAGCCC 5179390 Query 72237 ATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGA 72296 |||||| |||||||| || | ||| || ||||| | | | || ||| | | Sbjct 5179391 ATTGGAGTTGCCATTGGTGCCAGCGATGTAACTTCCCGTAGATCTGATGCAGCTGACGGC 5179450 Query 72297 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 72356 | ||| ||||| || ||| || ||||| | ||||| |||| | ||| ||||| || Sbjct 5179451 CACACCGATTCCTCCAGCCGACTTGGAGATGAGCGCGCACTGTTTCAGCGTGTCATAAAT 5179510 Query 72357 GCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACT 72416 |||||| || || |||||| ||||| || || || ||||| |||| || | | | Sbjct 5179511 GCCCTCGATGCTGTCATCCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGTGGCCTGTT 5179570 Query 72417 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATT 72476 || || |||||||| | || || || || || || ||||| || || ||||| || || Sbjct 5179571 GGTACCTGCATTAAAGAGTGTCGGGGAGGCATGGGTGAACCACTTCTCTGACAGCAGGTT 5179630 Query 72477 GTACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAA 72536 ||| || ||||| |||| || ||||| |||||| || || || | || | ||| | Sbjct 5179631 GTAGGTTTCAATCGCTGCATCAATATCTGTTTGATGGATCCCCACAGAAACCCTCATGAG 5179690 Query 72537 CATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAA 72596 ||| ||||| |||| || | | ||| || || ||||||| |||||| |||| Sbjct 5179691 CATGTGCTGCGGTCGCTCGGCCACTTTGCCGTTGATCTTCAACAGGTAGGACCGCTCCAG 5179750 Query 72597 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAG 72656 |||||||| || || | ||||||||||| || || || || || || |||| || || Sbjct 5179751 GGTTTTAAAGCCGAAGAAATTGTATGAAAAATCACGGTCATATATTATGGCCGAGTTCAG 5179810 Query 72657 TTTATCCTTATATTTGTTAACTATATCCATGGTGATACTT-GAAATAATCGGAGAATGTT 72715 || || | | | || || || | || | ||| || | || ||||| || Sbjct 5179811 GCGGTCTTTGTTCTGGAGGACGATGTCAAGCGT-CTCCTTGGAGACCATGGGAGAGTGAC 5179869 Query 72716 TCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGttttt 72775 | |||| || || | |||||| | | ||||||||||| ||||| || | || | Sbjct 5179870 GCTTATTTAGTGGGTTTATGTAGTTGTACAGGTCCTCCATCACGTCACTGAACACCTTCT 5179929 Query 72776 ttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATCTGGAT 72835 |||| |||||||| || ||||| ||||| || | || || || ||||| || || || | Sbjct 5179930 TTGTCTCCTTGTGCAGGTTTGAGACGGCGATCCGTGCAGCGAGGATGGCGTAGTCAGGGT 5179989 Query 72836 GTTGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCAATTCTACCGTTGTTA 72895 ||| || || ||| || | || |||||||||| ||||| | || ||||| || | Sbjct 5179990 GTTTGGTGGTCAGAGTAGCAGAGATCTCTGCTGCCAAGGTGTCGAGCTCCACCGTGGTGA 5180049 Query 72896 CTCCATTATATATTCCTTGGATAACCTTCATAGCTATTTTAATAGGATCTATATGATCAG 72955 ||||||| || | || ||||| |||||||| | || | || || | | |||| Sbjct 5180050 CTCCATTGTACAAACCCTGGATCACCTTCATGGTAATCTGGGCTGGGTCCACAAAGTCAG 5180109 Query 72956 TGTTTAAGCCATAACATAATTTTCTAATACGAGACGTGATTTTATCAAACATAACATTTT 73015 ||||| ||| || || | || || ||||| ||||||||||| ||||| || | Sbjct 5180110 CGTTTAGGCCGTAGCACAGCTTCTGGATGCGAGAGGTGATTTTATCGAACATGACGCGCT 5180169 Query 73016 CCCGGCATCCAT 73027 || ||| ||||| Sbjct 5180170 CCTGGCGTCCAT 5180181 Score = 114 bits (126), Expect = 2e-20 Identities = 128/171 (75%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 70868 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTAGGATCGGCTATGTGAATAT 70927 |||| ||||| || ||||| || ||||||||| |||| | || || || ||||| || | Sbjct 5177937 TCCAGCCGTAGAAGTGCATGCTGGTTAGTTTGCCATAGTTGGGCTCTGCGATGTGGATGT 5177996 Query 70928 TCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 70987 ||| ||||| || || ||||||||||| || | ||| || ||||| || ||||| || | Sbjct 5177997 TCAGAGACTGGCTCTGGTCGATGAAGGCGCCGCGGTCGGCTGCCATCTTGATGATGGTTT 5178056 Query 70988 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 71038 | || | |||||||| | ||||||||| | |||| | || | ||||| Sbjct 5178057 TCTGGGAGATTTCCCACACAGTTTTATACAGCTGCTTCACGTCGTTTGGAA 5178107 >seq15 Length=11516971 Score = 129 bits (142), Expect = 8e-25 Identities = 128/166 (77%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 72761 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAA 72820 ||||||| | ||| || || || ||||||||||| || ||||| || | || || || | Sbjct 9314594 CACTAAAGACTTTCTTGGTCTCTTTGTGTAGATTGGACACGGCGATCCGTGCAGCCAGGA 9314653 Query 72821 TGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCA 72880 |||||||||| |||| || || ||| ||||||||| | ||||||||||||||||||| Sbjct 9314654 TGGCATAATCAGGATATTTGGTGGTAAGAGTGGCTGCAGTCTCTGCTGCCAGAGTGTCCA 9314713 Query 72881 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 72926 || || || || |||||| | || | || ||||| |||||||| Sbjct 9314714 GCTCCACTGTGGTGACTCCACTGTACAGGCCCTGGATCACCTTCAT 9314759 Score = 114 bits (126), Expect = 2e-20 Identities = 102/128 (80%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 72022 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 72081 ||||||||||||||||| || || ||||| | ||| | || |||||||||| || ||| Sbjct 9313263 ACTCGTTTCATAAAGAGGTCTGGGATCCACAAAGCGAAGAACAGATCTCTGGCCCTCTGC 9313322 Query 72082 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 72141 ||||| || || || |||||||| || || |||||||| | | ||| ||||||||||| Sbjct 9313323 TCCTCTTTGCCAGTGTTCTTTTTCAGCTCCAGGAACGCAAACACATCGGAATGCCACGGC 9313382 Query 72142 TCCAAGTA 72149 |||| ||| Sbjct 9313383 TCCAGGTA 9313390 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671081859544600