Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Takifugu_20rubripes_20[refseq_20GCF_5F000180615.1_202011-10-13] 6,835 sequences; 391,484,715 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq11 154 2e-32 seq15 87.8 3e-12 seq10 86.0 9e-12 >seq11 Length=11238946 Score = 154 bits (170), Expect = 2e-32 Identities = 376/564 (67%), Gaps = 18/564 (3%) Strand=Plus/Minus Query 96807 ACAAACGGCAACGCCAGTGGCCTAGTGCCAATGCTCAGAATGTACAATGCAATGTCACGA 96866 || || |||||| ||| ||| || || || ||||| ||| | ||||| | |||| Sbjct 5179408 ACCAATGGCAACTCCAATGGGCTTGTCCCCATGCTGAGAGTTTACAACAACACCGCACGC 5179349 Query 96867 TACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGG 96926 || || ||||| || || || |||| || ||| | ||| | ||| ||||||| ||| Sbjct 5179348 TATGTGGACCAGGGTGGAAACAAGAGGCCTGGGGCTTTCGCCATGTACCTGGAACCCTGG 5179289 Query 96927 CACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGA 96986 || | || | |||||||| | ||| || || ||| |||| || ||| || Sbjct 5179288 CATTCCGATATATTTGACTTCCTGGAGTTGAAGAAGAACACTGGAAAAGAGGAGCAGAGA 5179229 Query 96987 GCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGAC 97046 ||||| ||| | || || | | ||| | || || |||||||||||| | || | || Sbjct 5179228 GCCAGAGACCTTTTCTACGGTATGTGGATCCCTGACTTGTTCATGAAGAGGGTGGA-GA- 5179171 Query 97047 GGTGGCTA---CTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGG 97103 || | | |||| |||||||| || ||| | ||||| ||| || |||||| Sbjct 5179170 -GTAACCAGGACTGGTCTCTAATGTGTCCAGACGAATGTCCCGGGCTGAATGAGTGCTGG 5179112 Query 97104 GGCGAAGAGTTTGAGGCCAAG---TACACGGCCTACGAGCAAGAGGGCCGATACGTGAGA 97160 || || ||||||||| ||| ||||| |||||| |||| ||||| ||| | Sbjct 5179111 GGGGAGGAGTTTGAG---AAGCTCTACACCAAATACGAGAAAGAAGGCCG---CGTCAAG 5179058 Query 97161 CGAGTCG---ATGCACGAGAACTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGA 97217 || || | | || | | | ||| | |||||| | | | ||| || || || Sbjct 5179057 CGTGTGGTGAAGGCCCAGCAGGTTTGGCATGCCATCATAGAGTCCCAGACTGAAACCGGC 5178998 Query 97218 ACTCCGTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGC 97277 ||||| ||||| |||||||| ||| || ||| | || |||||||| | | ||||| Sbjct 5178997 ACTCCATACATGCTCTACAAAGATGCCTGCAATAGGAAGAGCAACCAGCAGAATCTGGGC 5178938 Query 97278 ACCATCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACG 97337 ||||||||| || |||||| ||||| |||||||| || ||| || |||||| Sbjct 5178937 ACCATCAAGAGCAGCAATCTATGCACAGAAATTGTGGAATACACCAGCAGCGACGAGGTA 5178878 Query 97338 GCAGTTTGCGTTCTGGCATCGGTC 97361 || ||||| |||||| || ||| Sbjct 5178877 GCGGTTTGTAATCTGGCCTCCGTC 5178854 >seq15 Length=11516971 Score = 87.8 bits (96), Expect = 3e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 97179 CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTCTACAAG 97238 |||||| | |||||| | | |||| ||| || || || || ||||| ||||||||| Sbjct 9312971 CTGTGGTACGCCATCATCGAGTCTCAAACAGAAACCGGCACACCATACATGCTCTACAAG 9312912 Query 97239 GATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTCCAATCTG 97298 || || || | || |||||||| | || ||||||||||||| | ||||||| Sbjct 9312911 GACGCCTGCAACAGGAAGAGCAACCAGCAGAACCTGGGCACCATCAAATCCAGCAATCTG 9312852 Query 97299 TGCACGGAAATTGTAGAGTAC 97319 ||||| || |||||||||||| Sbjct 9312851 TGCACAGAGATTGTAGAGTAC 9312831 >seq10 Length=9126174 Score = 86.0 bits (94), Expect = 9e-12 Identities = 118/160 (74%), Gaps = 4/160 (3%) Strand=Plus/Plus Query 69962 GGATCGACCAATGCCAAAGAGCTGAGCCGA-AAGGGTGTACACATTTGGAGCGGCAACAG 70020 ||||| || |||||||||||||| | || || || ||| | |||||| | |||| | Sbjct 6095989 GGATCCACAAATGCCAAAGAGCTCT-CAGAGAAAGGAGTAAAGATTTGGGAAGCCAACGG 6096047 Query 70021 TAGTCGAAGCGTTT-TGGATTCGCTCGGCTTCACCGACAGACAAGAGGGCGATCTGGGGC 70079 | | | || ||| |||| || || |||||||| || | ||||| |||||||| | Sbjct 6096048 TTCTAGG-GCTTTTCTGGACAATCTGGGGCTCACCGACCGAGAGGAGGGAGATCTGGGCC 6096106 Query 70080 CAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTA 70119 | |||||||| |||||||||||||||| || || |||| Sbjct 6096107 CTGTGTACGGGTTCCAGTGGAGGCACTTTGGTGCCGAGTA 6096146 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740995885754600