Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Takifugu_20rubripes_20[refseq_20GCF_5F000180615.1_202011-10-13] 6,835 sequences; 391,484,715 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq6 87.8 9e-13 seq1329 84.2 1e-11 seq11 84.2 1e-11 seq1 84.2 1e-11 seq3999 82.4 4e-11 seq17 82.4 4e-11 seq8 82.4 4e-11 >seq6 Length=9412079 Score = 87.8 bits (96), Expect = 9e-13 Identities = 70/85 (82%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 ||||| | || |||||| | |||||||||| ||||||| ||||||||||||| ||| Sbjct 6759434 AAAAAACCAAGTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCACG 6759375 Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529 |||| |||||||||||||| |||| Sbjct 6759374 CTCTAACCAACTGAGCTAACCGGCC 6759350 Score = 86.0 bits (94), Expect = 3e-12 Identities = 57/64 (89%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 6759655 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 6759714 Query 11528 CCGT 11531 |||| Sbjct 6759715 CCGT 6759718 >seq1329 Length=192994 Score = 84.2 bits (92), Expect = 1e-11 Identities = 56/63 (89%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 77914 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 77973 Query 11528 CCG 11530 ||| Sbjct 77974 CCG 77976 >seq11 Length=11238946 Score = 84.2 bits (92), Expect = 1e-11 Identities = 65/78 (83%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 || ||||||| | |||||||||| ||||||| ||||||||||||| ||||||| || Sbjct 9690018 AAGTTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAAC 9689959 Query 11512 CAACTGAGCTAATGGGCC 11529 |||||||||||| |||| Sbjct 9689958 CAACTGAGCTAACCGGCC 9689941 >seq1 Length=23260604 Score = 84.2 bits (92), Expect = 1e-11 Identities = 70/85 (82%), Gaps = 1/85 (1%) Strand=Plus/Plus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 ||||| || || ||||| | |||||||||| ||||||| ||||||||||||| ||| Sbjct 22731126 AAAAAGCACAT-GGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCACG 22731184 Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529 |||| |||||||||||||| |||| Sbjct 22731185 CTCTAACCAACTGAGCTAACCGGCC 22731209 >seq3999 Length=8627 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 4941 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 5000 Query 11528 CC 11529 || Sbjct 5001 CC 5002 >seq17 Length=11184067 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 1600648 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 1600589 Query 11528 CC 11529 || Sbjct 1600588 CC 1600587 >seq8 Length=14690302 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 5214520 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 5214461 Query 11528 CC 11529 || Sbjct 5214460 CC 5214459 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 12102106 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 12102165 Query 11528 CC 11529 || Sbjct 12102166 CC 12102167 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 14569415 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 14569356 Query 11528 CC 11529 || Sbjct 14569355 CC 14569354 Lambda K H 0.639 0.410 0.921 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261469417374460