Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Takifugu_20rubripes_20[refseq_20GCF_5F000180615.1_202011-10-13] 6,835 sequences; 391,484,715 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq11 630 9e-176 seq15 120 4e-22 seq1226 105 8e-18 >seq11 Length=11238946 Score = 630 bits (698), Expect = 9e-176 Identities = 1331/1974 (67%), Gaps = 21/1974 (1%) Strand=Plus/Plus Query 62243 CTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCT 62302 |||||||||||| | || || | | |||| || || || || ||||| || || Sbjct 5178200 CTGAATGGATCCGTTGTGAGCGATGAGCTTATTTTTCATGTCCTCGTTCCACAACCCCCT 5178259 Query 62303 CTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCT 62362 ||| || | || | ||||| || || || || | || || || || |||| || || Sbjct 5178260 CTCCGTCAGGTCTTTGAGGAGGTGAGGGTTGACAATCTGGAACTCCCCGGACAGGACCCT 5178319 Query 62363 CCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGC 62422 || ||||| || || ||||| || | ||| | ||||| || || |||| || || || Sbjct 5178320 GCGGGTGTAGATGTTGCTGGTGTAGGCTTCGATAGACTCGTTGTTGCCCAGGATCTGGGC 5178379 Query 62423 AGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGAT 62482 ||||| || || ||||| || || | | | ||| || || | |||| | ||| Sbjct 5178380 GGTTGAGGCGGTGGGCATCGGGGCTAAGAGCAGACTGTTCCTCACGCCGTGCTTGGCGAT 5178439 Query 62483 TTTATCTTTTAG-AGGTTCCCAATTCCAA-AGATCCGACGGTACAACNNNNNNNNNNNNN 62540 ||| || ||||| || |||| | ||||| || || | || | | Sbjct 5178440 TTTTTCCTTTAGCAGCTTCC--AGTCCAACAGGTCGGTGGG--CGTCTTCTCCCACATGT 5178495 Query 62541 NNT--TGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCGTATGGTCCTTCCT 62598 | || || || || || ||| | || ||| | || || |||||||| || || Sbjct 5178496 CGTACTGAAGGATGCCCTTGCTGACCGGGGAGCCTTCGTAGGTTTCGTATGGCCCGAGCT 5178555 Query 62599 TCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCT 62658 |||| || || || |||||||| | || |||| || ||||| |||||||||| Sbjct 5178556 CGGCAGCCAGCTCGCAGCTCGCCTCGAGGGCTGCGTAGTAGATGGTCTCGAAGATCTGGG 5178615 Query 62659 TATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCCG 62718 | || ||| || ||||| |||| || || || ||| | ||| || || ||||| | Sbjct 5178616 TGTTCAGAAGCTGAGCTTCGGGGCTTTCGAACGGGTAACGCATGAGGATGAATGCGTCGG 5178675 Query 62719 CTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTG 62778 | || || || ||||| || || || || || || | ||| || || | |||||||| | Sbjct 5178676 CCAAACCCTGGACACCGATTCCTATTGGCCTGTGGCGCTTGTTGGACTTCTCAGCTTCGG 5178735 Query 62779 GAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCA 62838 | | ||||| |||||||||||||| || || || | ||| |||||| ||| ||| || Sbjct 5178736 GCACTGGATAGTAATTAATATCTATGATCTTGTTCAAGTTTTTGACAACTACCTTGGTCA 5178795 Query 62839 CATCCTTCAGTTTGAGAAAATCAAAT---CGCCCATCTATTACAAACATGTTCAAGGCAA 62895 || | ||||| |||| ||||| ||| || | | || ||||||| | || | Sbjct 5178796 CAGCAGCTAGTTTTTGAAAGTCAAAAGTCCGCTCAGCGGTGACGTACATGTTGAGTGCGA 5178855 Query 62896 CAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCA-TATTGTATTATCTCAGTG 62954 | || |||||||||||||| |||||||| | || | | |||| | || || ||| Sbjct 5178856 CGGAGGCCAGATTACAAACCGCTACCTCGTC-GCTGCTGGTGTATTCCACAATTTCTGTG 5178914 Query 62955 CAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCA 63014 || ||||| || | |||||| || || | ||| || || || ||||| | || || ||| Sbjct 5178915 CATAGATTGCTGCTCTTGATGGTGCCCAGATTCTGCTGGTTGCTCTTCCTATTGCAGGCA 5178974 Query 63015 TCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAG 63074 || || || || ||| ||||||| || |||||| |||| || ||||| || || | ||| Sbjct 5178975 TCTTTGTAGAGCATGTATGGAGTGCCGGTTTCAGTCTGGGACTCTATGATGGCATGCCAA 5179034 Query 63075 ACGACTCGAGCCTTTATTATAGATTTGTATCTCCTTTCTCTTTCGTATA--GTGTATACA 63132 || | ||||| | | | ||| | | |||| | |||||| ||||| | Sbjct 5179035 ACCTGCTGGGCCTTCACCACACGCTTGACGCGGCCTTCTTTCTCGTATTTGGTGTAGAGC 5179094 Query 63133 ATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCA 63192 || || ||||| || ||||| | | || || |||||||| || |||||||| | Sbjct 5179095 TTC--TCAAACTCCTCCCCCCAGCACTCATTCAGCCCGGGACATTCGTCTGGACACATTA 5179152 Query 63193 ACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGC-T 63251 ||||| || || | || ||| | ||||| || | ||||| ||||| | | | | Sbjct 5179153 GAGACCAGTCCTGGTTACTCTCCACCCTCTTCATGAACAAGTCAGGGATCCACATACCGT 5179212 Query 63252 ATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAAC 63311 | ||| || ||||||| ||| || ||||| ||||| || ||||| || | || ||||| Sbjct 5179213 AGAAA-AGGTCTCTGGCTCTCTGCTCCTCTTTTCCAGTGTTCTTCTTCAACTCCAGGAAG 5179271 Query 63312 GCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTT 63371 | | ||||| |||||||| ||||||| ||| ||||| | | | ||||||| |||||| Sbjct 5179272 TCAAATATATCGGAATGCCAGGGTTCCAGGTACATGGCGAAAGCCCCAGGCCTCTTGTTT 5179331 Query 63372 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 63431 || ||||| || | || | |||||||| || |||||||||| ||| || | || || Sbjct 5179332 CCACCCTGGTCCACATAGCGTGCGGTGTTGTTGTAAACTCTCAGCATGGGGACAAGCCCA 5179391 Query 63432 TTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT 63491 || || | |||||||| || | ||| || ||||| | | | || || | | Sbjct 5179392 TTGGAGTTGCCATTGGTGCCAGCGATGTAACTTCCCGTAGATCTGATGCAGCTGACGGCC 5179451 Query 63492 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATA 63551 | ||| ||||| || ||| || ||||| | ||||| |||| | ||||||||| || Sbjct 5179452 ACACCGATTCCTCCAGCCGACTTGGAGATGAGCGCGCACTGTTTCAGCGTGTCATAAATG 5179511 Query 63552 CCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTA 63611 ||||| ||||| ||||| ||||| || || || ||||| |||| || | | | Sbjct 5179512 CCCTCGATGCTGTCATCCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGTGGCCTGTTG 5179571 Query 63612 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 63671 || || |||||||| | || || || || || || ||||| || || || || || ||| Sbjct 5179572 GTACCTGCATTAAAGAGTGTCGGGGAGGCATGGGTGAACCACTTCTCTGACAGCAGGTTG 5179631 Query 63672 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 63731 || || ||||| |||| || ||||| |||||| || || || | || | ||| | | Sbjct 5179632 TAGGTTTCAATCGCTGCATCAATATCTGTTTGATGGATCCCCACAGAAACCCTCATGAGC 5179691 Query 63732 ATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAA 63791 |||||||| |||| || | | ||| ||| || ||||||| |||||| |||| Sbjct 5179692 ATGTGCTGCGGTCGCTCGGCCACTTTGCCGTTGATCTTCAACAGGTAGGACCGCTCCAGG 5179751 Query 63792 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGT 63851 |||||||| || || | ||||||||||| || || || || || || ||||||| || Sbjct 5179752 GTTTTAAAGCCGAAGAAATTGTATGAAAAATCACGGTCATATATTATGGCCGAGTTCAGG 5179811 Query 63852 TTATCCTTATATTTGTTAACTATATCCATGGTGATACTT-GAAATAATCGGAGAATGTTT 63910 || || | | | || || || | || | ||| || | || ||||| || Sbjct 5179812 CGGTCTTTGTTCTGGAGGACGATGTCAAGCGT-CTCCTTGGAGACCATGGGAGAGTGACG 5179870 Query 63911 CCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtttttt 63970 | |||| || || | |||||| | | ||||||||||| ||||| || | || || Sbjct 5179871 CTTATTTAGTGGGTTTATGTAGTTGTACAGGTCCTCCATCACGTCACTGAACACCTTCTT 5179930 Query 63971 tGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATCCGGATG 64030 ||| |||||||| || ||||| ||||| || | || || || ||||| || || || || Sbjct 5179931 TGTCTCCTTGTGCAGGTTTGAGACGGCGATCCGTGCAGCGAGGATGGCGTAGTCAGGGTG 5179990 Query 64031 TTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTGTTAC 64090 || || || ||| || | || || ||||||| ||||| | || ||||| || || Sbjct 5179991 TTTGGTGGTCAGAGTAGCAGAGATCTCTGCTGCCAAGGTGTCGAGCTCCACCGTGGTGAC 5180050 Query 64091 TCCATTATATATTCCTTGAATAACCTTCATAGCTATTTTAATAGGATCTATATGATCCGT 64150 |||||| || | || || || |||||||| | || | || || | | || | Sbjct 5180051 TCCATTGTACAAACCCTGGATCACCTTCATGGTAATCTGGGCTGGGTCCACAAAGTCAGC 5180110 Query 64151 GTTTAAGCCATAACATAATTTTCTAATACGAGACGTGATTTTATCAAACATGAC 64204 ||||| ||| || || | || || ||||| ||||||||||| |||||||| Sbjct 5180111 GTTTAGGCCGTAGCACAGCTTCTGGATGCGAGAGGTGATTTTATCGAACATGAC 5180164 Score = 114 bits (126), Expect = 2e-20 Identities = 128/171 (75%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 62062 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 62121 |||| ||||| || ||||| || ||||||||| ||| | || ||||| || ||||| | Sbjct 5177937 TCCAGCCGTAGAAGTGCATGCTGGTTAGTTTGCCATAGTTGGGCTCTGCGATGTGGATGT 5177996 Query 62122 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 62181 ||| ||| || || || ||||||||||| || | ||| || ||||| || ||||| || | Sbjct 5177997 TCAGAGACTGGCTCTGGTCGATGAAGGCGCCGCGGTCGGCTGCCATCTTGATGATGGTTT 5178056 Query 62182 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 62232 | || | |||||||| | ||||||||| | |||| | || | ||||| Sbjct 5178057 TCTGGGAGATTTCCCACACAGTTTTATACAGCTGCTTCACGTCGTTTGGAA 5178107 >seq15 Length=11516971 Score = 120 bits (132), Expect = 4e-22 Identities = 126/166 (76%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 63955 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAA 64014 ||||||| | ||| || || || ||||||||||| || ||||| || | || || || | Sbjct 9314594 CACTAAAGACTTTCTTGGTCTCTTTGTGTAGATTGGACACGGCGATCCGTGCAGCCAGGA 9314653 Query 64015 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 64074 |||||||||| |||| || || ||| ||||||||| | || |||||||||||||||| Sbjct 9314654 TGGCATAATCAGGATATTTGGTGGTAAGAGTGGCTGCAGTCTCTGCTGCCAGAGTGTCCA 9314713 Query 64075 ATTCTACCGTTGTTACTCCATTATATATTCCTTGAATAACCTTCAT 64120 || || || || |||||| | || | || || || |||||||| Sbjct 9314714 GCTCCACTGTGGTGACTCCACTGTACAGGCCCTGGATCACCTTCAT 9314759 Score = 113 bits (124), Expect = 6e-20 Identities = 113/147 (77%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 63215 CACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATG 63274 |||||||||||||||||| || || ||||| | ||| | || |||||||||| || || Sbjct 9313262 CACTCGTTTCATAAAGAGGTCTGGGATCCACAAAGCGAAGAACAGATCTCTGGCCCTCTG 9313321 Query 63275 TTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 63334 ||||| || || || |||||||| || || |||||||| | | ||| ||||||||||| Sbjct 9313322 CTCCTCTTTGCCAGTGTTCTTTTTCAGCTCCAGGAACGCAAACACATCGGAATGCCACGG 9313381 Query 63335 TTCCAAGTATATGGCCATAACTCCAGG 63361 |||| ||| | || | ||||||| Sbjct 9313382 CTCCAGGTACACAGCAAAGGCTCCAGG 9313408 >seq1226 Length=411779 Score = 105 bits (116), Expect = 8e-18 Identities = 96/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 |||||||||| || || || |||||||| || || || |||||||| ||||| | || | Sbjct 204644 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATCAGGCCCCTTTTCT 204585 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445 | ||||| || |||||||| || || ||||| ||||| || || || || |||||||||| Sbjct 204584 TCAGCCAGAAGATGGAAGCAAAGGACCCAGAGAAGAAAATACCCTCCACGGCAGCAAAGG 204525 Query 33446 C 33446 | Sbjct 204524 C 204524 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622893976948600