Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Takifugu_20rubripes_20[refseq_20GCF_5F000180615.1_202011-10-13] 6,835 sequences; 391,484,715 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq11 219 1e-51 seq15 91.5 4e-13 >seq11 Length=11238946 Score = 219 bits (242), Expect = 1e-51 Identities = 615/929 (66%), Gaps = 24/929 (3%) Strand=Plus/Minus Query 363391 TTCGGATATAAGACGATGGAGAAATCCTACCTATCTCGTATCAATGGTGATATTGTTGAA 363450 ||||| | ||| || ||||| |||||||| | ||||| || | | | || Sbjct 5179765 TTCGGCTTTAAAACCCTGGAGCGGTCCTACCTGTTGAAGATCAACGGCAAAGTGGCCGAG 5179706 Query 363451 CGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATGTTGATGCC 363510 || |||||||| ||| | ||| | ||| || | || |||||| | ||| ||||||| Sbjct 5179705 CGACCGCAGCACATGCTCATGAGGGTTTCTGTGGGGATCCATCAAACAGATATTGATGCA 5179646 Query 363511 GCGATTGAAACATATAAGCTTCTA--AGTGCTCGTGTATTCACGCACGCCACGCCAACAA 363568 ||||||||||| || || || || || | ||| ||||| || ||| | || ||| Sbjct 5179645 GCGATTGAAACCTACAACCTGCTGTCAGAGAA-GTGG-TTCACCCATGCCTCCCCGACAC 5179588 Query 363569 TGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAAATGAAGG 363628 | | ||||| || || | |||||| |||| ||||| || || ||||||| Sbjct 5179587 TCTTTAATGCAGGTACCAACAGGCCACAGCTGTCCAGCTGCTTCCTGCTCGCCATGAAGG 5179528 Query 363629 ACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAAGAATG 363688 | || ||||||||| || | |||||| || || | || || || || |||||| | Sbjct 5179527 ATGACAGCATCGAGGGCATTTATGACACGCTGAAACAGTGCGCGCTCATCTCCAAGTCGG 5179468 Query 363689 CAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGC-ACAGAACAGTTACATTCGC-GG 363746 | || ||||| ||||| | || | | | | || | | |||||||| ||| || Sbjct 5179467 CTGGAGGAATCGGTGTGGCCGTCAGCTGCATCAGATCTACGGGA-AGTTACAT-CGCTGG 5179410 Query 363747 CACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGCGAG 363806 ||| || |||| |||||||| || |||||||| | || | |||| || || | Sbjct 5179409 CACCAATGGCAACTCCAATGGGCTTGTCCCCATGCTGAGAGTTTACAACAACACCGCACG 5179350 Query 363807 GTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCTCA 363866 || || |||||||||||| ||| | ||||| || || ||||| || || || Sbjct 5179349 CTATGTGGACCAGGGTGGAAACAAGAGGCCTGGGGCTTTCGCCATGTACCTGGAACCCTG 5179290 Query 363867 TCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAATTGCG 363926 ||| ||||||| ||||| || || ||| | ||| ||||| ||||||||||| | | Sbjct 5179289 GCATTCCGATATATTTGACTTCCTGGAGTTGAAGAAGAACACTGGAAAAGAGGAGCAGAG 5179230 Query 363927 TGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTGGAGGC 363986 || | || || ||||| | | ||| | ||||| || |||||| | |||||| Sbjct 5179229 AGCCAGAGACCTTTTCTACGGTATGTGGATCCCTGACTTGTTCATGAAGAGGGTGGAG-- 5179172 Query 363987 AGGTA--AGAATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGATGTATGG 364044 || | || | ||||| || | || ||| |||||||||| || || || ||| Sbjct 5179171 AGTAACCAGGACTGGTCTCTAATGTGTCCAGACGAATGTCCCGGGCTGAATGAGTGCTGG 5179112 Query 364045 GGTGACGACTAT--GTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGGCTCGT-AAG 364101 || || || | | | |||||| || ||| || || || ||| | | ||| ||| Sbjct 5179111 GGGGAGGAGTTTGAGAAGCTCTACACCAAA--TACGA----GAAAGAAGGCCGCGTCAAG 5179058 Query 364102 ---ACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGA 364158 | || ||| || | ||| ||||||||| || || |||| ||| || || Sbjct 5179057 CGTGTGGTGAAGGCCCAGCAGGTTTGGCATGCCATCATAGAGTCCCAGACTGAAACCGGC 5178998 Query 364159 ACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGT 364218 || || || ||| | ||||||||| | ||||| | ||| |||||||||| | || || Sbjct 5178997 ACTCCATACATGCTCTACAAAGATGCCTGCAATAGGAAGAGCAACCAGCAGAATCTGGGC 5178938 Query 364219 ACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAGACT 364278 || || || ||||| ||||| || || ||| | ||||||||| ||||||| Sbjct 5178937 ACCATCAAGAGCAGCAATCTATGCACAGAAATTGTGGAATACACCAGCAGCGACGAGGTA 5178878 Query 364279 GCCGTATGTAACCTTGCGTCGATCGCGCT 364307 || || ||||| || || || |||| || Sbjct 5178877 GCGGTTTGTAATCTGGCCTCCGTCGCACT 5178849 >seq15 Length=11516971 Score = 91.5 bits (100), Expect = 4e-13 Identities = 135/189 (71%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 364951 CAGAACATTCCAGGATTTCCA-GAAGATCTGAAGCCTATTTACAAAACCGTATGGGAAAT 365009 ||| |||| |||||| ||| || || ||||||| | || |||||||| |||||||| Sbjct 9311632 CAGGACAT-CCAGGAGATCCCCGATGACCTGAAGCAGCTGTATAAAACCGTGTGGGAAAT 9311574 Query 365010 TTCCATGCGAACTCTCATTGATATGGCGGCCGATCGCGGTGCTTTTATCTGTCAGAGCCA 365069 ||| | || || | | ||||| || |||||||| |||| ||| ||||||||| Sbjct 9311573 CTCCCAGAAGACCGTCCTCAAGATGGCAGCAGATCGCGGCGCTTACATCGATCAGAGCCA 9311514 Query 365070 GTCGTTTAACGTATTCATGACTCAGCCAACCTCCGCCAAGCTTACATCCATGCATTTCTA 365129 |||| | ||| | ||| | |||| |||| || ||| || || |||||| || || Sbjct 9311513 GTCGCTGAACATCCACATCGCAGAGCCGACCTACGGCAAACTGACCAGCATGCACTTTTA 9311454 Query 365130 CGGGTGGAA 365138 ||| ||||| Sbjct 9311453 CGGTTGGAA 9311445 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303239460844970