Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Takifugu_20rubripes_20[refseq_20GCF_5F000180615.1_202011-10-13] 6,835 sequences; 391,484,715 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq11 275 6e-69 seq15 113 4e-20 seq6 84.2 2e-11 >seq11 Length=11238946 Score = 275 bits (304), Expect = 6e-69 Identities = 987/1516 (65%), Gaps = 58/1516 (4%) Strand=Plus/Plus Query 145058 TTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGTGAAGGGT 145117 ||||| | ||| ||||| |||| || || | || || | ||| ||| ||| | Sbjct 5178288 TTGACAATCTGGAACTCCCCGGACAGGACCCTGCGGGTGTAGATGTTGCTGGTGTAGGCT 5178347 Query 145118 TCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTACGCCACC 145177 || | ||||||||| ||||||||||| || ||||| | ||||||||||| || | Sbjct 5178348 TCGATAGACTCGTTGTTGCCCAGGATCTGGGCGGTTGAGGCGGTGGGCATCGGGGCTAAG 5178407 Query 145178 A--ATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCAATCCC 145235 | | | || || | || ||||||||| ||| | |||||||||| ||| ||| Sbjct 5178408 AGCAGACTG--TTCCTCACGCCGTGCTTGGCGATTTTTTCCTTTAGCAGCTTCCAGTCCA 5178465 Query 145236 ATAGCGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTCGCTGGCGGGGC 145295 | || || ||| || ||||||||||||||||| | ||||||| |||| | ||| Sbjct 5178466 ACAGGTCGGTGGGCGTCTTCTCCCACATGTCGTACTGAAGGATGCCCTTGCTGACCGGGG 5178525 Query 145296 TGCCTTGAAAGGAACTGTAACTGCCCCAAGTTTTG--GCGAGCTCGCAACTCGCCTCCAG 145353 ||||| ||| ||| || ||| || | | || |||||||| |||||||| || Sbjct 5178526 AGCCTTCGTAGGTTTCGTA--TGGCCCGAGCTCGGCAGCCAGCTCGCAGCTCGCCTCGAG 5178583 Query 145354 AGCGCCGAAATAAATTGTCTCGGCAATTTGCCTGTTGAGCAGCATCGCTTCATCGCTCTC 145413 || || | || || |||||| || || |||| || ||| ||||| ||| || Sbjct 5178584 GGCTGCGTAGTAGATGGTCTCGAAGATCTGGGTGTTCAGAAGCTGAGCTTCGGGGCTTTC 5178643 Query 145414 GTACGGCATGCGCAGCAGTACAAAAGCATCGGCGAGCCCCTGTATTCCCACGCCGATGGG 145473 | |||| |||| || | || || ||||| | ||||| | || | || || || Sbjct 5178644 GAACGGGTAACGCATGAGGATGAATGCGTCGGCCAAACCCTGGACACCGATTCCTATTGG 5178703 Query 145474 CCGATGTTTCATGTTG-----CTCATCCTCGCCGACTCGATAGGATATCGATTACGGTCG 145528 || || | ||||| |||| | ||| ||| ||||| | |||| || Sbjct 5178704 CCTGTGGCGCTTGTTGGACTTCTCAGCTTCGGGCACTGGATAGTA-----ATTAATATCT 5178758 Query 145529 ATAATTTTATTCAAGTTTCGCACTACTACCTTTGTAATGTGCCGCAACTTTTC-AAAGTC 145587 || || || ||||||||| || |||||||| || | || || | |||| |||||| Sbjct 5178759 ATGATCTTGTTCAAGTTTTTGACAACTACCTTGGTCACA-GCAGCTAGTTTTTGAAAGTC 5178817 Query 145588 AAACCGAGCCTCGTCAACGACCACACAGCTATTGACGGCGATCGACGCCAAATTACAAAC 145647 ||| || | ||| || || | | |||| |||| || |||| ||||||||| Sbjct 5178818 AAA---AGTCCGCTCAGCGGTGACGTACATGTTGAGTGCGACGGAGGCCAGATTACAAAC 5178874 Query 145648 TGCCGTCTCCTCGGCGTCGCTGTATTGTACGATCTCGGCGCACAAATTGCTACATTTGAT 145707 || ||| ||| | | |||||| || || || | ||| | |||||| | ||||| Sbjct 5178875 CGCTACCTCGTCGCTGCTGGTGTATTCCACAATTTCTGTGCATAGATTGCTGCTCTTGAT 5178934 Query 145708 GGTTCCCAGATTTTGCTGATTACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTACGG 145767 ||| |||||||| ||||| || || ||||| ||||| || || |||||||||||||| || Sbjct 5178935 GGTGCCCAGATTCTGCTGGTTGCTCTTCCTATTGCAGGCATCTTTGTAGAGCATGTATGG 5178994 Query 145768 TCCGCCAGTCTCCACCTGCGTCTCCACGATAAAACGGTGCAAGTCCTGC---GCACGCAC 145824 ||| || || ||| | ||| | ||| | ||| | ||||| || ||| Sbjct 5178995 AGTGCCGGTTTCAGTCTGGGACTCTATGATGGCA---TGCCAAACCTGCTGGGCCTTCAC 5179051 Query 145825 CTGCTGCTGGTAGCGGCCCTCTTCTTCGTATTTCCTGTAGAGCTCCTCAAACGCGGAACC 145884 | ||| | |||||| |||| |||||||| ||||||||| ||||||| | || Sbjct 5179052 CACACGCTTGACGCGGCCTTCTTTCTCGTATTTGGTGTAGAGCTTCTCAAACTCCTCCCC 5179111 Query 145885 GTAGCAATCGGACAGGCCGGGACACTTGTTGGGACACATCAGCGACCATACGCCGTTGGC 145944 |||| || ||| |||||||| | || |||||||| || ||||| | ||| Sbjct 5179112 CCAGCACTCATTCAGCCCGGGACATTCGTCTGGACACATTAGAGACCAGTCCTGGTTACT 5179171 Query 145945 GTTGACGCGCTCCATAAACAAATCTGGCACCCACAGCGCGTACATCAAGTCGC--GCGCT 146002 | || | || ||| ||||| || || | ||||| |||| | | ||| | || || Sbjct 5179172 CTCCACCCTCTTCATGAACAAGTCAGGGATCCACATACCGTAGAAAAGGTCTCTGGCTCT 5179231 Query 146003 TTGCAATCCTCAGCACCCATGTTTCGCTTCAAATTAAGCACACTATAGATGTCCGCGTGC 146062 ||| ||||| || |||| |||||| | || | | | || || | ||| Sbjct 5179232 CTGC--TCCTCTTTTCCAGTGTTCTTCTTCAACTCCAGGAAGTCAAATATATCGGAATGC 5179289 Query 146063 CACGGTTCAATATAGACGGCGAGGGCTC----CTTTTCGTTTGCCACCCTGGTCCACGTG 146118 || ||||| | || | ||||| || | | | | |||| |||||||||||||| | Sbjct 5179290 CAGGGTTCCAGGTACATGGCGAAAGCCCCAGGCCTCTTGTTT-CCACCCTGGTCCACATA 5179348 Query 146119 ACGTACCATGTTGTTAAAGACGCGCACCATGGGCTCGACGCCGCTGGCTACGCCGTTCGT 146178 ||| | ||||||| | || | || |||||| | | || ||| ||| || || Sbjct 5179349 GCGTGCGGTGTTGTTGTAAACTCTCAGCATGGGGACAAGCCCATTGGAGTTGCCATTGGT 5179408 Query 146179 ---AGAGTTTATTCTGGTGCCGCGGGAGCGCACGCAATGAACATTCACGCCGAGACCGCC 146235 || | | || | ||| || | | ||| || ||| |||| || || Sbjct 5179409 GCCAGCGATGTAACT--TCCCG-TAGATCTGATGCAGCTGACGGCCACACCGATTCCTCC 5179465 Query 146236 -GCCGTACTTGGATAT-AGCGGCGCAGTCGCCGAGCGTCTCGTAGATGCCGTCAATGCTA 146293 |||| ||||||| || ||| ||||| | ||||| || || ||||| || ||||| Sbjct 5179466 AGCCG-ACTTGGAGATGAGC-GCGCACTGTTTCAGCGTGTCATAAATGCCCTCGATGCTG 5179523 Query 146294 TC--GCTTCGAATGCCGAGCAGAAAGCACGAGCACATCTGCGCCATCGGCGTCCCCGCCG 146351 || |||| ||| ||||||| ||||| | ||| ||| | | | || || || Sbjct 5179524 TCATCCTTC--ATGGCGAGCAGGAAGCAGCTGGACAGCTGTGGCCTGTTGGTACCTGCAT 5179581 Query 146352 AGAACAACGTCGGGCTCGCGTGCGT-AAACATTTTTCGGCTCATCATCCGATACGTTTCG 146410 || | |||||| || || || || || || || | || || || ||||| Sbjct 5179582 TAAAGAGTGTCGGGGAGGCATGGGTGAACCACTTCTCTG-ACAGCAGGTTGTAGGTTTCA 5179640 Query 146411 ATAGCGTCTTGAATGTCGTCGCCATGAATGCCCAAAGCGACGCGCATGAGCATGTGTTGG 146470 || || | | ||| || ||| || |||| || || | |||||||||||| || Sbjct 5179641 ATCGCTGCATCAATATCTGTTTGATGGATCCCCACAGAAACCCTCATGAGCATGTGCTGC 5179700 Query 146471 GGCCGCTCCGCCACTTGATTGTCAATCTTTAACAAATAG--CCGTTCTCCAGGGTTTTGT 146528 || ||||| ||||||| || ||||| |||| ||| ||| |||||||||||| Sbjct 5179701 GGTCGCTCGGCCACTTTGCCGTTGATCTTCAACAGGTAGGACCG--CTCCAGGGTTTTAA 5179758 Query 146529 ATCCGAAAAATTTGTA 146544 | ||||| || ||||| Sbjct 5179759 AGCCGAAGAAATTGTA 5179774 >seq15 Length=11516971 Score = 113 bits (124), Expect = 4e-20 Identities = 92/112 (82%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 145668 TGTATTGTACGATCTCGGCGCACAAATTGCTACATTTGATGGTTCCCAGATTTTGCTGAT 145727 |||| | ||| ||||| | ||||| |||||| |||||||||| ||||| || ||||| | Sbjct 9312830 TGTACTCTACAATCTCTGTGCACAGATTGCTGGATTTGATGGTGCCCAGGTTCTGCTGGT 9312889 Query 145728 TACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTACGGTCCGCCAGTCTC 145779 | || ||||||||||| |||||||||||||||||||| ||| ||| || || Sbjct 9312890 TGCTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTATGGTGTGCCGGTTTC 9312941 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| | || |||||| || | || | ||| |||||||| || |||||||| ||| Sbjct 2476746 CCACCCCTCAGACGCAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 2476805 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| || || ||||||||||| || |||| | | |||||| || || || Sbjct 2476806 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGA 2476865 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| ||| || ||| | | ||| | || ||| ||| ||| | Sbjct 2476866 ATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGCTGGGCTCCACC 2476925 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | || | ||| || || || || |||||||| || ||||||||| Sbjct 2476926 TCAAGAGTGATGGTCTTGCCAGTCAGGGTTTTTACAAAGATCTGCATG 2476973 Score = 102 bits (112), Expect = 8e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| || | || |||||| || | || | ||| |||||||| || |||||||| ||| Sbjct 2476973 GCCCCCCCTCAGACGCAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 2477032 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | |||||| || || ||||||||||| || |||| | | |||||| || || || Sbjct 2477033 GAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGG 2477092 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || ||||| ||||| ||| || ||| | | ||| | || ||| ||| ||| | Sbjct 2477093 AATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGCTGGGCTCCAC 2477152 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | || | ||| || || || || |||||||| || ||||||||| Sbjct 2477153 CTCAAGAGTGATGGTCTTGCCAGTCAGGGTTTTTACAAAGATCTGCATG 2477201 Score = 102 bits (112), Expect = 8e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| || | || |||||| || | || | ||| |||||||| || |||||||| ||| Sbjct 2477201 GCCCCCCCTCAGACGCAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 2477260 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | |||||| || || ||||||||||| || |||| | | |||||| || || || Sbjct 2477261 GAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGG 2477320 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || ||||| ||||| ||| || ||| | | ||| | || ||| ||| ||| | Sbjct 2477321 AATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGCTGGGCTCCAC 2477380 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | || | ||| || || || || |||||||| || ||||||||| Sbjct 2477381 CTCAAGAGTGATGGTCTTGCCAGTCAGGGTTTTTACAAAGATCTGCATG 2477429 Score = 98.7 bits (108), Expect = 9e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| || | || |||||| || | || | ||| |||||||| || |||||||| ||| Sbjct 2477429 GCCCCCCCTCAGACGCAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 2477488 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | |||||| || || ||||||||||| || |||| | | |||||| || || || Sbjct 2477489 GAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGG 2477548 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || ||||| ||||| ||| || ||| | | ||| | || || ||| ||| | Sbjct 2477549 AATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCCAC 2477608 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | || | ||| || || || || |||||||| || ||||||||| Sbjct 2477609 CTCAAGAGTGATGGTCTTGCCAGTCAGGGTTTTTACAAAGATCTGCATG 2477657 >seq6 Length=9412079 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 |||||| |||||| ||||| | || | ||| ||||||| || |||||||| || Sbjct 6657412 CCACCGGACAAACGGAGCACAAGGTGGAGGGTGAACTCCTTCTGGATGTTGTAGTCAGAG 6657353 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||| | ||||| ||||||||||| || |||| | ||||||||| || |||||| Sbjct 6657352 AGGGTGTGGCCGTCCTGCAGCTGCTTGCCAGCAAAGATGAGACGCTGCTGATCAGGAGGG 6657293 Query 131128 ATTCCTTCTTTGTC 131141 || || || || || Sbjct 6657292 ATCCCCTCCTTATC 6657279 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471972472406400