Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Takifugu_20rubripes_20[refseq_20GCF_5F000180615.1_202011-10-13] 6,835 sequences; 391,484,715 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq15 154 3e-32 seq6 89.7 9e-13 seq20 84.2 4e-11 >seq15 Length=11516971 Score = 154 bits (170), Expect = 3e-32 Identities = 167/219 (76%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 || |||| || | ||| || |||||||| || |||||||| || |||||||| || | Sbjct 2476755 AGACGCAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGG 2476814 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 |||||||| | |||||| || || || || || || || || || || |||||||||||| Sbjct 2476815 CCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCC 2476874 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTACTTCCAAGGT 68422 ||||| || ||||| ||||| ||| ||| |||||||| ||| | || || || | || Sbjct 2476875 TTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTC-GCTGGGCTCCACCTCAAGAGT 2476933 Query 68423 GATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||||| || || || ||||| || || || |||||||| Sbjct 2476934 GATGGTCTTGCCAGTCAGGGTTTTTACAAAGATCTGCAT 2476972 Score = 154 bits (170), Expect = 3e-32 Identities = 167/219 (76%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 || |||| || | ||| || |||||||| || |||||||| || |||||||| || | Sbjct 2476983 AGACGCAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGG 2477042 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 |||||||| | |||||| || || || || || || || || || || |||||||||||| Sbjct 2477043 CCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCC 2477102 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTACTTCCAAGGT 68422 ||||| || ||||| ||||| ||| ||| |||||||| ||| | || || || | || Sbjct 2477103 TTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTC-GCTGGGCTCCACCTCAAGAGT 2477161 Query 68423 GATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||||| || || || ||||| || || || |||||||| Sbjct 2477162 GATGGTCTTGCCAGTCAGGGTTTTTACAAAGATCTGCAT 2477200 Score = 154 bits (170), Expect = 3e-32 Identities = 167/219 (76%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 || |||| || | ||| || |||||||| || |||||||| || |||||||| || | Sbjct 2477211 AGACGCAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGG 2477270 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 |||||||| | |||||| || || || || || || || || || || |||||||||||| Sbjct 2477271 CCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCC 2477330 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTACTTCCAAGGT 68422 ||||| || ||||| ||||| ||| ||| |||||||| ||| | || || || | || Sbjct 2477331 TTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTC-GCTGGGCTCCACCTCAAGAGT 2477389 Query 68423 GATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||||| || || || ||||| || || || |||||||| Sbjct 2477390 GATGGTCTTGCCAGTCAGGGTTTTTACAAAGATCTGCAT 2477428 Score = 145 bits (160), Expect = 1e-29 Identities = 163/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 || |||| || | ||| || |||||||| || |||||||| || |||||||| || | Sbjct 2477439 AGACGCAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGG 2477498 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 |||||||| | |||||| || || || || || || || || || || |||||||||||| Sbjct 2477499 CCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCC 2477558 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423 ||||| || ||||| ||||| || ||| |||||||| | || || || | ||| Sbjct 2477559 TTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCCACCTCAAGAGTG 2477618 Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| || || || ||||| || || || |||||||| Sbjct 2477619 ATGGTCTTGCCAGTCAGGGTTTTTACAAAGATCTGCAT 2477656 >seq6 Length=9412079 Score = 89.7 bits (98), Expect = 9e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 68258 GTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTG 68317 ||| || ||||||| | |||||||| || |||||| | | |||||| || | ||| Sbjct 6657161 GTGGAGGGTGGACTTCATCTGGATGTTGTAGGTGGAGAGGGCGCACCCATCCTCAAGCTG 6657102 Query 68318 CTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTT 68377 ||| || || | || || | || || || || || || || ||||| || || ||||| Sbjct 6657101 CTTACCAGCATAGATCAGACACTGCTGATCAGGAGGGATCCCCTCCTTATCATGGATCTT 6657042 Query 68378 TGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGT 68437 |||||| | | ||| |||| | ||| || | || ||||||| || || || Sbjct 6657041 GACCTTGATATTCACAATGCTGTCATTGGGTTCCACATTCAGACTGATGGTCTTGCCAGT 6656982 Query 68438 GAGGGTCTTGACGAATATCTGCAT 68461 |||||||| || ||||||||||| Sbjct 6656981 CAGGGTCTTCACAAATATCTGCAT 6656958 Score = 89.7 bits (98), Expect = 9e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 68258 GTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTG 68317 ||| || ||| |||| || |||||||| || || ||||| || || || | | ||| Sbjct 6657389 GTGGAGGGTGAACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGTGGCCGTCCTGCAGCTG 6657330 Query 68318 CTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTT 68377 ||| || || || ||||| | || || || || || || || ||||| || || ||||| Sbjct 6657329 CTTGCCAGCAAAGATGAGACGCTGCTGATCAGGAGGGATCCCCTCCTTATCATGGATCTT 6657270 Query 68378 TGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGT 68437 |||||| | | ||| |||| | ||| || | || ||||||| || | || Sbjct 6657269 GACCTTGATATTCACAATGCTGTCATTGGGTTCCACATTCAGACTGATGGTCTTGTCAGT 6657210 Query 68438 GAGGGTCTTGACGAATATCTGCAT 68461 |||||||| || ||||||||||| Sbjct 6657209 CAGGGTCTTCACAAATATCTGCAT 6657186 >seq20 Length=13411851 Score = 84.2 bits (92), Expect = 4e-11 Identities = 83/105 (79%), Gaps = 2/105 (2%) Strand=Plus/Plus Query 68358 CCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTACTTC 68416 |||||||| || || |||||||||||||| ||||| ||||| ||| | || || || Sbjct 10779675 CCTTCCTTATCCTGGATCTTTGCCTTGACATTTTCGATCGTGTC-GCTGGGCTCCACCTC 10779733 Query 68417 CAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 | ||||||||| |||||||| | ||||| ||||| |||||||| Sbjct 10779734 GAGGGTGATGGTCTTTCCCGTCAACGTCTTCACGAAGATCTGCAT 10779778 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921543658886200