Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Takifugu_20rubripes_20[refseq_20GCF_5F000180615.1_202011-10-13] 6,835 sequences; 391,484,715 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq11 387 3e-102 seq1226 127 4e-24 seq15 109 1e-18 seq12 102 2e-16 seq1114 84.2 4e-11 >seq11 Length=11238946 Score = 387 bits (428), Expect = 3e-102 Identities = 958/1442 (66%), Gaps = 54/1442 (4%) Strand=Plus/Plus Query 244010 GAGCCCTTGTGGACGATGAGCTGGGTGCGCATGTTATCGTTCCACAGGCCCAAGCGCTCC 244069 || || ||||| ||||||||| | ||||| |||||||||| ||| | |||| Sbjct 5178207 GATCCGTTGTGAGCGATGAGCTTATTTTTCATGTCCTCGTTCCACAACCCC---CTCTCC 5178263 Query 244070 ---AGCGCCTCGACCAGGTGCCTGTTCACCACCTGAAACTCTCCCGACAGCACGCGGCGC 244126 || | | || ||||| ||| || | ||| ||||| || ||||| || | ||| Sbjct 5178264 GTCAGGTCTTTGAGGAGGTGAGGGTTGACAATCTGGAACTCCCCGGACAGGACCCTGCGG 5178323 Query 244127 TGGTAGAGGTTGCTGCTGAGCGGCTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTG 244186 ||||| ||||||| || | ||||| ||| |||||||||| ||||| || || Sbjct 5178324 GTGTAGATGTTGCTGGTGTAGGCTTCGATAGACTCGTTGTTGCCCAGGATCTGGGCGGTT 5178383 Query 244187 CTCGCAGTCGGCATGGGCGACACCAGCAGACTGTTCCTCACGCCGTGCCTCTGGATGCGG 244246 || || ||||| || | | |||||||||||||||||||||||| | ||| Sbjct 5178384 GAGGCGGTGGGCATCGGGGCTAAGAGCAGACTGTTCCTCACGCCGTGCTTGGCGATTTTT 5178443 Query 244247 AGTCTGAGCTCGTTCCAGTCCCACATGCCCGAGAG-GTCCTCGCGTTTGAGGCCCCACAT 244305 | ||| ||||||||| ||| | | | | | ||| || | |||||| Sbjct 5178444 TCCTTTAGCAGCTTCCAGTCCAACAGGTCGGTGGGCGTCTTCTC----------CCACAT 5178493 Query 244306 GTCAAACTGCAGCAGCCCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTC 244365 ||| |||| || | ||||||||||| ||| ||| |||||||| ||| || ||| Sbjct 5178494 GTCGTACTGAAGGATGCCCTTGCTGACCGGGGAGCCTTCGTAGGTTTCGTATGGCCCGA- 5178552 Query 244366 GCGCTGG-GCCAGCTTACAGCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCA 244424 || | | ||||||| |||||| | |||||||| |||||||||||||||||||||||| Sbjct 5178553 GCTCGGCAGCCAGCTCGCAGCTCGCCTCGAGGGCTGCGTAGTAGATGGTCTCGAAGATCT 5178612 Query 244425 TCTTGTTCATGTCGCGGGCCTT-GCCGCAGGTGAAGGGGATGCCCATCATCATGAAGACG 244483 |||||| | || | ||| | || ||| ||| | ||| | ||||| || Sbjct 5178613 GGGTGTTCA-GAAGCTGAGCTTCGGGGCTTTCGAACGGGTAACGCATGAGGATGAATGCG 5178671 Query 244484 TCGGCCAGTCCCTGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAGCGCATGGCT 244543 ||||||| ||||| || ||||| || || || ||||| ||||||||||| | ||| Sbjct 5178672 TCGGCCAAACCCTGGACACCGATTCCTATTGGCCTGTGGCGCTTGTTGGACTTCTCAGCT 5178731 Query 244544 TCGGGCACGGGGTAAAAGTTGCCGTCGATCACCTTGTTGAGGTTGCGGGTGATCATGCGG 244603 |||||||| || || | || || || | |||||| | ||| ||| || Sbjct 5178732 TCGGGCACTGGATAGTAATTAATATCTATGATCTTGTTCAAGTTTT---TGA-CA----- 5178782 Query 244604 ACGACGTCGGCCAGCAGCTGAAAGTCGT----ACTCGTAGGGATCCTCGGCGATGGTGAT 244659 || || | || || |||| | ||| | | || | | ||| ||| || Sbjct 5178783 ACTACCTTGGTCA-CAGCAGCTAGTTTTTGAAAGTCAAAAGTCCGCTCAGCGGTG----- 5178836 Query 244660 CCTCACAAACTCGTTGAGGGCGACGCTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTT 244719 || || |||||| |||||| |||||| || || || || ||||| || | | Sbjct 5178837 ----ACGTACATGTTGAGTGCGACGGAGGCCAGATTACAAACCGCTACCTCGTCGCTGCT 5178892 Query 244720 GGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTG 244779 |||||| | ||||| || ||||| || || |||| ||||||||||||||| | ||| || Sbjct 5178893 GGTGTATTCCACAATTTCTGTGCATAGATTGCTGCTCTTGATGGTGCCCAGATTCTGCTG 5178952 Query 244780 ATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTG 244839 ||| ||| |||||||| || |||||||||||| | || ||||| || ||| Sbjct 5178953 GTTGCTCTTCCTATTGCAGGCATCTTTGTAGAGCATGTATGGAGTGCCGGTTTCAGTCTG 5179012 Query 244840 GGCGACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCT- 244898 || | | || | | ||| | | | ||||| ||| | || | | | ||| Sbjct 5179013 GGACTCTATGATGGCATGCCAAACCTGCTGGGCCTTCACCACAC-GCTTGACGCGGCCTT 5179071 Query 244899 CTGCCTCGTAGCGGGTGTACAGGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGG 244958 || |||||| |||||| || ||| ||||| |||||| ||| | || |||| Sbjct 5179072 CTTTCTCGTATTTGGTGTAGAGCTTCTCAAACTCCTCCCCCCAGCACTCATTCAGCCCGG 5179131 Query 244959 GGCACGACGCCGGGCACATGAGACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGA 245018 | || | || ||||| ||| ||| || | || ||||||| |||||| | Sbjct 5179132 GACATTCGTCTGGACACATTAGAGACCAGTCCTGGTTACTCTCCACCCTCTTCATGAACA 5179191 Query 245019 GGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGT 245078 ||| |||||||| | | | ||| ||||| |||| |||||||| || ||||||| Sbjct 5179192 AGTCAGGGATCCACATACCGTAGAAAAGGTCTCTGGCTCTCTGCTCCTCTTTTCCAGTGT 5179251 Query 245079 TCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGA 245138 ||||| ||| ||||| |||||||| | ||| |||||||| |||| ||| | |||| Sbjct 5179252 TCTTCTTCAACTCCAGGAAGTCAAATATATCGGAATGCCAGGGTTCCAGGTACATGGCGA 5179311 Query 245139 GGGCGCCGGGCCGCTTGTTGCCTCCCTGGTCCACCATCCTCTCGAGCG----CGTTGAAG 245194 || || |||| |||||| || |||||||||| | | || ||| |||| | Sbjct 5179312 AAGCCCCAGGCCTCTTGTTTCCACCCTGGTCCA----CATAGCGTGCGGTGTTGTTGTAA 5179367 Query 245195 ATGCGCAGGGTAGGCACTATGCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCC 245254 | | ||| | || || | || || |||| ||| |||||||| |||||| ||| Sbjct 5179368 ACTCTCAGCATGGGGACAAGCCCATTGGAGTTGCCATTGGTGCCAGCGATGTAACTTCCC 5179427 Query 245255 TTGCCCCTGAGGTTGCTGATGGACATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCG 245314 | |||| | ||||| || || || | ||| || || |||||||||||| ||| Sbjct 5179428 GTAGATCTGATGCAGCTGACGGCCACACCGATTCCTCCAGCCGACTTGGAGATGAGCGCG 5179487 Query 245315 CAGCTCTTGATGGTGTCTGCTATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAG 245374 || || | ||||| |||||||| |||||||| ||||||| |||||| ||| Sbjct 5179488 CACTGTTTCAGCGTGTCATAAATGCCCTCGATGCTGTCATCCTTCATGGCGAGCAGGAAG 5179547 Query 245375 CAGGAGGACAGCTGGGGCTTGGGGCTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTA 245434 ||| ||||||||| ||| || | | | | || || || || ||| ||| ||||| Sbjct 5179548 CAGCTGGACAGCTGTGGCCTGTTGGTACCTGCATTAAAGAGTGTCGGGGAGGCATGGGTG 5179607 Query 245435 AA 245436 || Sbjct 5179608 AA 5179609 >seq1226 Length=411779 Score = 127 bits (140), Expect = 4e-24 Identities = 106/127 (83%), Gaps = 2/127 (2%) Strand=Plus/Plus Query 42706 TGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCT 42765 ||||||||||| | ||||| ||||| || |||||||| || |||| || |||||||||| Sbjct 204519 TGGTAGCCTTTGCTGCCGTGGAGGGTATTTTCTTCTCTGGGTCCTTTGCTTCCATCTTCT 204578 Query 42766 GGCTCAAGCAGAAGGTGTC-GATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGG 42824 |||| ||| | |||| | | ||||||||| || |||||||| ||||| ||||||||||| Sbjct 204579 GGCTGAAG-AAAAGGGGCCTGATGCCCGGCCTGACCTTCTCCAACGAGCTCATCAGCAGA 204637 Query 42825 GACGAGG 42831 ||||||| Sbjct 204638 GACGAGG 204644 Score = 84.2 bits (92), Expect = 4e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 43070 CCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCG 43129 |||||| ||||| |||||||||||||| ||||||| ||||||||||| || |||||| | Sbjct 205433 CCCCTTTGACTTCATGGAGAACATCTCTCTGGAGGGAAAGACCAACTTCTTTGAGAAGAG 205492 Query 43130 CGTCGCCGACTACCAG 43145 || | ||| |||||| Sbjct 205493 GGTGGGCGAGTACCAG 205508 >seq15 Length=11516971 Score = 109 bits (120), Expect = 1e-18 Identities = 113/148 (76%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 244097 ACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGATG 244156 ||||||||||||||||| || || | |||| ||||| ||||||| || | ||||||| Sbjct 9311885 ACCTGAAACTCTCCCGAGAGAACCCTGCGCGTGTAGATGTTGCTGGTGTAGGCCTCGATG 9311944 Query 244157 CTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGCAGA 244216 ||| |||| ||||| ||||| || ||| || || |||||||| | || |||||| Sbjct 9311945 GACTCGTTGTTCCCCAGGATCTGGGCGGTGGAGGCTGTGGGCATGGGAGCCAGCAGCAGG 9312004 Query 244217 CTGTTCCTCACGCCGTGCCTCTGGATGC 244244 |||||||| ||||| || || ||| || Sbjct 9312005 CTGTTCCTGACGCCATGTCTGAGGACGC 9312032 Score = 104 bits (114), Expect = 4e-17 Identities = 90/112 (80%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 244705 CACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGT 244764 |||||| || | | ||||||| |||||||| ||||| || || ||| | |||||||| Sbjct 9312813 CACCTCATCTTTGCTCGTGTACTCTACAATCTCTGTGCACAGATTGCTGGATTTGATGGT 9312872 Query 244765 GCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATG 244816 |||||||| ||| || ||| ||| ||||||||||||||||||||||||| Sbjct 9312873 GCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATG 9312924 Score = 96.9 bits (106), Expect = 7e-15 Identities = 104/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 245011 CATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGA 245070 ||| |||||||| |||||||| | || ||| || || |||| ||||||||| || Sbjct 9313271 CATAAAGAGGTCTGGGATCCACAAAGCGAAGAACAGATCTCTGGCCCTCTGCTCCTCTTT 9313330 Query 245071 GCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTA 245130 |||||||||||| ||||||||| || |||| || ||| ||||| ||||||| ||| Sbjct 9313331 GCCAGTGTTCTTTTTCAGCTCCAGGAACGCAAACACATCGGAATGCCACGGCTCCAGGTA 9313390 Query 245131 GACAGCGAGGGCGCCGGG 245148 ||||| | ||| || || Sbjct 9313391 CACAGCAAAGGCTCCAGG 9313408 >seq12 Length=10661439 Score = 102 bits (112), Expect = 2e-16 Identities = 101/128 (79%), Gaps = 2/128 (2%) Strand=Plus/Plus Query 42705 CTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTC 42764 ||||| || ||| | || || ||||||||||||||||| ||| | ||||| ||||||| | Sbjct 1964149 CTGGTGGCATTTGCAGCAGTGGAGGGCATCTTCTTCTCTGGCTCGTTCGCGTCCATCTAC 1964208 Query 42765 TGGCTCAAGCAGAAGGTGTC-GATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAG 42823 ||||| ||| | |||| | | ||||| || ||||||| || || || ||||||||||| Sbjct 1964209 TGGCTGAAG-AAAAGGGGACTCATGCCGGGCCTCACCTATTCTAATGAGCTCATCAGCAG 1964267 Query 42824 GGACGAGG 42831 || |||| Sbjct 1964268 AGATGAGG 1964275 >seq1114 Length=2922 Score = 84.2 bits (92), Expect = 4e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 43070 CCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCG 43129 |||||| ||||| |||||||||||||| ||||||| ||||||||||| || |||||| | Sbjct 171 CCCCTTTGACTTCATGGAGAACATCTCTCTGGAGGGAAAGACCAACTTCTTTGAGAAGAG 230 Query 43130 CGTCGCCGACTACCAG 43145 || | ||| |||||| Sbjct 231 GGTGGGCGAGTACCAG 246 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944258518019600