Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Takifugu_20rubripes_20[refseq_20GCF_5F000180615.1_202011-10-13]
6,835 sequences; 391,484,715 total letters
Query= NC_010240.1
Length=169794
Score E
Sequences producing significant alignments: (Bits) Value
seq15 102 9e-17
seq1284 96.9 4e-15
seq16 89.7 6e-13
seq1366 87.8 2e-12
seq227 86.0 7e-12
seq1270 84.2 2e-11
seq9 84.2 2e-11
seq5887 82.4 8e-11
>seq15
Length=11516971
Score = 102 bits (112), Expect = 9e-17
Identities = 166/238 (70%), Gaps = 1/238 (0%)
Strand=Plus/Plus
Query 41972 AATT-TATCGACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATAT 42030
|||| ||| |||| || || | ||||| || | || | ||| |||||| || || |
Sbjct 2476735 AATTCTATTGACCACCCCTCAGACGCAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGT 2476794
Query 42031 TGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCT 42090
|||| || | || || || | || || |||||||| ||||| || || || | |||||
Sbjct 2476795 TGTAGTCGGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCT 2476854
Query 42091 GGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGC 42150
| || | || | || ||||||||| ||| || || | || | | |||||||
Sbjct 2476855 GATCAGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGC 2476914
Query 42151 TCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
| | ||||| || | |||||||| ||||| || || || ||||||||||| |||||
Sbjct 2476915 TGGGCTCCACCTCAAGAGTGATGGTCTTGCCAGTCAGGGTTTTTACAAAGATCTGCAT 2476972
Score = 95.1 bits (104), Expect = 1e-14
Identities = 136/192 (71%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076
|||||| || || ||||| || | || || || | || || |||||||| ||||| ||
Sbjct 2477009 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAA 2477068
Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136
|| || | |||||| || | || | || ||||||||| ||| || || | |
Sbjct 2477069 GATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTT 2477128
Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196
| | | |||||||| | ||||| || | |||||||| ||||| || || || |||||
Sbjct 2477129 CTCAATGGTGTCGCTGGGCTCCACCTCAAGAGTGATGGTCTTGCCAGTCAGGGTTTTTAC 2477188
Query 42197 AAAGATTTGCAT 42208
|||||| |||||
Sbjct 2477189 AAAGATCTGCAT 2477200
Score = 95.1 bits (104), Expect = 1e-14
Identities = 136/192 (71%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076
|||||| || || ||||| || | || || || | || || |||||||| ||||| ||
Sbjct 2477237 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAA 2477296
Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136
|| || | |||||| || | || | || ||||||||| ||| || || | |
Sbjct 2477297 GATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTT 2477356
Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196
| | | |||||||| | ||||| || | |||||||| ||||| || || || |||||
Sbjct 2477357 CTCAATGGTGTCGCTGGGCTCCACCTCAAGAGTGATGGTCTTGCCAGTCAGGGTTTTTAC 2477416
Query 42197 AAAGATTTGCAT 42208
|||||| |||||
Sbjct 2477417 AAAGATCTGCAT 2477428
Score = 93.3 bits (102), Expect = 5e-14
Identities = 138/196 (70%), Gaps = 0/196 (0%)
Strand=Plus/Plus
Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076
|||||| || || ||||| || | || || || | || || |||||||| ||||| ||
Sbjct 2477465 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAA 2477524
Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136
|| || | |||||| || | || | || ||||||||| ||| || || | |
Sbjct 2477525 GATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATT 2477584
Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196
| | | ||||| || | ||||| || | |||||||| ||||| || || || |||||
Sbjct 2477585 CTCAATGGTGTCACTGGGCTCCACCTCAAGAGTGATGGTCTTGCCAGTCAGGGTTTTTAC 2477644
Query 42197 AAAGATTTGCATTTTC 42212
|||||| ||||| |||
Sbjct 2477645 AAAGATCTGCATGTTC 2477660
Score = 89.7 bits (98), Expect = 6e-13
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066
|||| || | | |||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 2263763 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 2263704
Query 57067 TACTACCGAGGA 57078
||||| ||||||
Sbjct 2263703 TACTAACGAGGA 2263692
>seq1284
Length=223579
Score = 96.9 bits (106), Expect = 4e-15
Identities = 74/87 (85%), Gaps = 2/87 (2%)
Strand=Plus/Minus
Query 56994 TATGAAAAATTT--TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGG 57051
||| |||||| | ||||| || | | |||||||||| |||||||||||||||||||||
Sbjct 29898 TATTAAAAATCTCGTCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGG 29839
Query 57052 ACATACTCACCACTATACTACCGAGGA 57078
|||||||||||||||||| ||||||
Sbjct 29838 GGATACTCACCACTATACTAACGAGGA 29812
>seq16
Length=10310320
Score = 89.7 bits (98), Expect = 6e-13
Identities = 69/82 (84%), Gaps = 0/82 (0%)
Strand=Plus/Minus
Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057
||||| || |||| || | | |||||||||| ||||| |||||||||||||||| ||||
Sbjct 7366298 AAAAACTTACTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATAC 7366239
Query 57058 TCACCACTATACTACCGAGGAT 57079
| ||||||||||| |||||||
Sbjct 7366238 TGTCCACTATACTAACGAGGAT 7366217
>seq1366
Length=45111
Score = 87.8 bits (96), Expect = 2e-12
Identities = 68/81 (84%), Gaps = 0/81 (0%)
Strand=Plus/Plus
Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057
|||||| |||| || | | |||||||||||||||| |||||||||||||||| ||||
Sbjct 44802 AAAAATAAACTCCCCGTCGGGGAATCGAACCCTGGTCTTCCGCGTGACAGGCGGAGATAC 44861
Query 57058 TCACCACTATACTACCGAGGA 57078
| ||||||||||| ||||||
Sbjct 44862 TGTCCACTATACTAACGAGGA 44882
>seq227
Length=3591
Score = 86.0 bits (94), Expect = 7e-12
Identities = 69/82 (84%), Gaps = 1/82 (1%)
Strand=Plus/Plus
Query 56998 AAAAATTTT-CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 57056
||| ||||| |||| || | | |||||||||| ||||| |||||||||||||||| |||
Sbjct 861 AAACATTTTACTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATA 920
Query 57057 CTCACCACTATACTACCGAGGA 57078
|| ||||||||||| ||||||
Sbjct 921 CTGTCCACTATACTAACGAGGA 942
>seq1270
Length=239015
Score = 84.2 bits (92), Expect = 2e-11
Identities = 54/59 (92%), Gaps = 0/59 (0%)
Strand=Plus/Plus
Query 57020 AATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAGGA 57078
|||||||||||||||| |||||||||||||||| ||||| ||||||||||| ||||||
Sbjct 49993 AATCGAACCCTGGTCTTCCGCGTGACAGGCGGAGATACTGTCCACTATACTAACGAGGA 50051
>seq9
Length=13922460
Score = 84.2 bits (92), Expect = 2e-11
Identities = 63/74 (85%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065
||||| || | | |||||||||| ||||| |||||||||||||||| ||||| |||||
Sbjct 5630315 TCTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTGTCCACT 5630374
Query 57066 ATACTACCGAGGAT 57079
|||||| |||||||
Sbjct 5630375 ATACTAACGAGGAT 5630388
>seq5887
Length=5450
Score = 82.4 bits (90), Expect = 8e-11
Identities = 66/80 (83%), Gaps = 0/80 (0%)
Strand=Plus/Plus
Query 56999 AAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 57058
|||| | |||| || | | |||||||||| ||||| |||||||||||||||| |||||
Sbjct 5281 AAAAGTGACTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACT 5340
Query 57059 CACCACTATACTACCGAGGA 57078
||||||||||| ||||||
Sbjct 5341 GTCCACTATACTAACGAGGA 5360
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 543166389256400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |