Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Takifugu_20rubripes_20[refseq_20GCF_5F000180615.1_202011-10-13] 6,835 sequences; 391,484,715 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq11 212 8e-50 seq15 95.1 1e-14 seq1226 84.2 3e-11 >seq11 Length=11238946 Score = 212 bits (234), Expect = 8e-50 Identities = 837/1302 (64%), Gaps = 36/1302 (3%) Strand=Plus/Plus Query 115903 TAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 115962 ||||||||| | ||||| | || | |||| ||||| |||| ||| ||||| || ||| Sbjct 5178327 TAGATGTTGCTGGTGTAGGCTTCGATAGACTCGTTGTTGCCCAGGATCTGGGCGGTTGAG 5178386 Query 115963 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCC 116022 || |||||||| || || | ||| || ||||| | | || | || |||| Sbjct 5178387 GCGGTGGGCATCGGGGCTAAGAGCAGACTGTTCCTCACGCCGTGCTTGGCGATTTTTTCC 5178446 Query 116023 TTGAGGGCGTCCCAGTC------GTAGTTGAGCTTTGTCTCCCCCTCCCACATATCAAAC 116076 || || | |||||| || | || || |||| | |||||||| || || Sbjct 5178447 TTTAGCAGCTTCCAGTCCAACAGGTCGGTGGGC---GTCTTC---TCCCACATGTCGTAC 5178500 Query 116077 TGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCC 116136 || ||||| || | | | || || || || | || || ||||| || | | Sbjct 5178501 TGAAGGATGCCCTTGCTGACCGGGGAGCCTTCGTAGGTTTCGTATGGCCCGAGCTCGGCA 5178560 Query 116137 GCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTC 116196 |||| ||| ||||||||||||||||||||| || || ||||| || || | | ||| Sbjct 5178561 GCCAGCTCGCAGCTCGCCTCGAGGGCTGCGTAGTAGATGGTCTCGAAGATCTGGGTGTTC 5178620 Query 116197 ATTGCCTTGGCCTCGTCGGAATCAAACGCGAGACGGCACAAAATAAATACATCCGCGAGA 116256 | || || ||| | || |||| | ||| | || ||| | || || | | Sbjct 5178621 AGAAGCTGAGCTTCGGGGCTTTCGAACGGGTAACGCATGAGGATGAATGCGTCGGCCAAA 5178680 Query 116257 CCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCCACG 116316 || |||||||||| || ||||| | || | | | || ||||| ||| ||| Sbjct 5178681 CCCTGGACACCGATTCCTATTGGCCTGTGGCGCTTGTTGGACTTCTCAGCTTCGGGCACT 5178740 Query 116317 GGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCA 116376 ||||| |||| |||| || | | | || | |||||| || ||||| || | || Sbjct 5178741 GGATAGTAATTAATATCTATGATCTTGTTCAAGTTTTTGACAACTACCTTGGTCACAGCA 5178800 Query 116377 TGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATT 116436 || |||| | |||||| | || ||| | |||| ||| | || |||| Sbjct 5178801 GCTAGTTTTTGAAAGTCAAAAGTCCG---CTCAGCGGTGACGTACATGTTGAGTGCGACG 5178857 Query 116437 GACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACAC 116496 || ||||||||||| || | ||| || | ||||| || | |||||| || || Sbjct 5178858 GAGGCCAGATTACAAACCGCTACCTCGTCGCTGCTGGTGTATTCCACAATTTCTGTGCAT 5178917 Query 116497 AAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCC 116556 | ||| ||||| |||||||||| |||| || || ||| | || || ||||| Sbjct 5178918 AGATTGCTGCTCTTGATGGTGCCCAGATTCTGCTGGTTGCTCTTCCTATTGCAGGCATCT 5178977 Query 116557 TTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCATACA 116616 ||||||||||| ||||| || || || || || ||||||| | || || | ||| || Sbjct 5178978 TTGTAGAGCATGTATGGAGTGCCGGTTTCAGTCTGGGACTCTATGATGGCATGCCAAACC 5179037 Query 116617 T-CGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGC 116675 | | | | || || || ||| | || || || | |||||| || |||||||| Sbjct 5179038 TGCTGGGCCTTCACCACACGC-TTGACGCGGCCTTCTTTCTCGTATTTGGTGTAGAGCTT 5179096 Query 116676 CTCAAACTCTTCACCCACAGC-CTCTGAGAGCCCTGGTGCCTTATCTGGACAGAAGAGAG 116734 ||||||||| || ||| |||| ||| ||||| || | |||||||| | |||| Sbjct 5179097 CTCAAACTCCTC-CCCCCAGCACTCATTCAGCCCGGGACATTCGTCTGGACACATTAGAG 5179155 Query 116735 ACCA---TTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCG 116791 |||| || || |||| |||| ||||||||| | ||| |||||||| | | Sbjct 5179156 ACCAGTCCTGGTTACTCTCC---ACCCTCTTCATGAACAAGTCAGGGATCCACATACCGT 5179212 Query 116792 AGAAGAGATC-CCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAG 116850 |||| || || | | | ||| || | || || || |||||||| ||| Sbjct 5179213 AGAAAAGGTCTCTGGCTCTCTGCTCCTCTTTTCCAGTG-TTCTTCTTCAACTCCAGGAAG 5179271 Query 116851 TCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTGCGAC----G 116906 || | ||||| | ||||| ||||||||||||| |||| | |||| || | Sbjct 5179272 TCAAATATATCGGAATGCCAGGGTTCCAGGTACATGGCGAAAG-CCCCAGGCCTCTTGTT 5179330 Query 116907 ACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGATACC 116966 ||| |||||| ||||| | || || ||| | || | ||||| || | | || Sbjct 5179331 TCCACCCTGGTCCACATAGCGTGCGGTGTTGTTGTAAACTCTCAGCATGGGGACAAGCCC 5179390 Query 116967 ATCAGATTGGCCATTTGTCCCCCGAATACGAGACTT--GTTGGCTCTGACATCGTGGATG 117024 || || | |||||| || || || | |||| | | ||||| | || | Sbjct 5179391 ATTGGAGTTGCCATTGGTGCCAGCGAT--GTAACTTCCCGTAGATCTGATGCAGCTGACG 5179448 Query 117025 TGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTAG 117084 || ||| || || || ||| |||| ||||| | ||||||| | || || | || Sbjct 5179449 GCCACACCGATTCCTCCAGCCGACTTGGAGATGAGCGCGCACTGTTTCAGCGTGTCATAA 5179508 Query 117085 ATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGGCCTT 117144 || || ||||| |||| |||| | |||| ||||||||||| |||| |||||||| Sbjct 5179509 ATGCCCTCGATGCTGTCATCCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGTGGCCTG 5179568 Query 117145 GGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAAC 117186 ||||| || || ||||| || || | || ||| ||||| Sbjct 5179569 TTGGTACCTGCATTAAAGAGTGTCGGGGAGGCATGGGTGAAC 5179610 >seq15 Length=11516971 Score = 95.1 bits (104), Expect = 1e-14 Identities = 76/92 (83%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 115903 TAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 115962 ||||||||| | ||||| | ||| | | |||| ||||| |||| ||| ||||| |||||| Sbjct 9311918 TAGATGTTGCTGGTGTAGGCCTCGATGGACTCGTTGTTCCCCAGGATCTGGGCGGTGGAG 9311977 Query 115963 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTT 115994 |||||||||||||| |||| || |||||||| Sbjct 9311978 GCTGTGGGCATGGGAGCCAGCAGCAGGCTGTT 9312009 Score = 86.0 bits (94), Expect = 8e-12 Identities = 113/155 (73%), Gaps = 4/155 (3%) Strand=Plus/Plus Query 116460 CTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATT--TGAACTCTTAATGGTG 116517 |||||| || |||||||||| ||| || || |||| ||| || | | | |||||| Sbjct 9312816 CTCATCTTTGCTCGTGTACTCTACAATCTCTGTGCACAGATTGCTGGATT--TGATGGTG 9312873 Query 116518 CCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTC 116577 |||| ||||| || || ||| |||| || || |||||||||||||| ||||| || Sbjct 9312874 CCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTATGGTGTG 9312933 Query 116578 CCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCA 116612 || || || ||||| |||| || || || | ||| Sbjct 9312934 CCGGTTTCTGTTTGAGACTCGATGATGGCGTACCA 9312968 >seq1226 Length=411779 Score = 84.2 bits (92), Expect = 3e-11 Identities = 84/109 (77%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 127539 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCT 127598 ||||||| | | |||||| || || |||||| ||| || ||||| || |||| |||| Sbjct 204644 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATCAGGCCCCTTTTCT 204585 Query 127599 TCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCAC 127647 ||| |||||| || | | ||| || ||||||||||| || |||||||| Sbjct 204584 TCAGCCAGAAGATGGAAGCAAAGGACCCAGAGAAGAAAATACCCTCCAC 204536 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613454783478600