Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Takifugu_20rubripes_20[refseq_20GCF_5F000180615.1_202011-10-13]
6,835 sequences; 391,484,715 total letters
Query= NC_015960.1
Length=175699
Score E
Sequences producing significant alignments: (Bits) Value
seq11 255 7e-63
seq12 93.3 5e-14
>seq11
Length=11238946
Score = 255 bits (282), Expect = 7e-63
Identities = 628/945 (66%), Gaps = 14/945 (1%)
Strand=Plus/Plus
Query 47874 TTAAGTGCTATAGATGCTAGATTACATACAGCTACCTCATTTGGATTAGTATATTGTATT 47933
|| ||||| | || || |||||||| || |||||||| | | || |||| |
Sbjct 5178846 TTGAGTGCGACGGAGGCCAGATTACAAACCGCTACCTCGTCGCTGCTGGTGTATTCCACA 5178905
Query 47934 ATTTCAGCACATAGATTACCACATTTGATAGTACCCAAATTTTGATGATTATTNNNNTTG 47993
||||| | |||||||| | | ||||| || |||| ||| || || || | |
Sbjct 5178906 ATTTCTGTGCATAGATTGCTGCTCTTGATGGTGCCCAGATTCTGCTGGTTGCTCTTCCTA 5178965
Query 47994 TTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATA 48053
|| || || || ||||| ||||| | || || || ||||| |||| || || |||||
Sbjct 5178966 TTGCAGGCATCTTTGTAGAGCATGTATGGAGTGCCGGTTTCAGTCTGGGACTCTATGATG 5179025
Query 48054 GATTTCCAAACAGTCCTAGCCTTTATAACA-GCTCTA----GCTTTATTATCATGTTCGT 48108
| | |||||| | ||||| | ||| ||| | || || || || ||||
Sbjct 5179026 GCATGCCAAACCTGCTGGGCCTTCACCACACGCTTGACGCGGCCTTCTT-TC----TCGT 5179080
Query 48109 ATTTAGTATATAACTTCTCAAATTCATCCCCATA-CACATTATCTAACCCAGGACATTCA 48167
|||| || || | ||||||||| || ||||| | ||| | || | ||| ||||||||
Sbjct 5179081 ATTTGGTGTAGAGCTTCTCAAACTCCTCCCCCCAGCAC-TCATTCAGCCCGGGACATTCG 5179139
Query 48168 TTAGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGT 48227
| |||||||| | ||||| |||| | | | | || || |||| || | || ||
Sbjct 5179140 TCTGGACACATTAGAGACCAGTCCTGGTTACTCTCCACCCTCTTCATGAACAAGTCAGGG 5179199
Query 48228 ATCCAAAGAGC-TATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTT 48286
||||| | | | || ||| | || || | ||| | || || || ||| | ||| | ||
Sbjct 5179200 ATCCACATACCGTAGAAA-AGGTCTCTGGCTCTCTGCTCCTCTTTTCCAGTGTTCTTCTT 5179258
Query 48287 AAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACC 48346
| || || ||||| | |||||| | |||||| ||||| | || || || | | ||
Sbjct 5179259 CAACTCCAGGAAGTCAAATATATCGGAATGCCAGGGTTCCAGGTACATGGCGAAAGCCCC 5179318
Query 48347 TGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACAT 48406
|| | || || || || || || | ||| | || || ||||| |||||||| | |||
Sbjct 5179319 AGGCCTCTTGTTTCCACCCTGGTCCACATAGCGTGCGGTGTTGTTGTAAACTCTCAGCAT 5179378
Query 48407 TGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTAT 48466
||||||| ||||| || | |||||||| || | || |||||||| ||| ||| ||
Sbjct 5179379 GGGGACAAGCCCATTGGAGTTGCCATTGGTGCCAGCGATGTAACTTCCCGTAGATCTGAT 5179438
Query 48467 ATTACTAATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAG 48526
|| | | | ||| || || || ||| || || || || || ||| |||| ||
Sbjct 5179439 GCAGCTGACGGCCACACCGATTCCTCCAGCCGACTTGGAGATGAGCGCGCACTGTTTCAG 5179498
Query 48527 GGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACAT 48586
|| |||||||| || || || || ||||| |||| | || || || || ||||
Sbjct 5179499 CGTGTCATAAATGCCCTCGATGCTGTCATCCTTCATGGCGAGCAGGAAGCAGCTGGACAG 5179558
Query 48587 TTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTC 48646
|| || || |||| |||||| | ||| || || ||||| | ||||| |||||
Sbjct 5179559 CTGTGGCCTGTTGGTACCTGCATTAAAGAGTGTCGGGGAGGCATGGGTGAACCACTTCTC 5179618
Query 48647 TGATAACAATTTATATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGA 48706
||| | || || || |||||||| | | ||| ||||| |||||| || || | |||
Sbjct 5179619 TGACAGCAGGTTGTAGGTTTCAATCGCTGCATCAATATCTGTTTGATGGATCCCCACAGA 5179678
Query 48707 TACACGCATTAACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATA 48766
|| | ||| | ||| | || |||| || | | |||| || || ||||| || ||
Sbjct 5179679 AACCCTCATGAGCATGTGCTGCGGTCGCTCGGCCACTTTGCCGTTGATCTTCAACAGGTA 5179738
Query 48767 TGATTTTTCCAATGTTTTAAAACCAAAATAGTTGTATGAAAAGTC 48811
|| |||| |||||||| || || | ||||||||||| ||
Sbjct 5179739 GGACCGCTCCAGGGTTTTAAAGCCGAAGAAATTGTATGAAAAATC 5179783
>seq12
Length=10661439
Score = 93.3 bits (102), Expect = 5e-14
Identities = 102/136 (75%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042
|||| ||||| || || | ||||||||| | || | || ||||| ||||| ||||| |
Sbjct 1964275 CCTCATCTCTGCTGATGAGCTCATTAGAATAGGTGAGGCCCGGCATGAGTCCCCTTTTCT 1964216
Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102
| | |||| | || || || || || ||||| ||||| || || || ||||||||||| |
Sbjct 1964215 TCAGCCAGTAGATGGACGCGAACGAGCCAGAGAAGAAGATGCCCTCCACTGCTGCAAATG 1964156
Query 19103 CAACTAGTCTTTCTCC 19118
| || |||| ||| ||
Sbjct 1964155 CCACCAGTCGTTCCCC 1964140
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 562060774829400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |