Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Takifugu_20rubripes_20[refseq_20GCF_5F000180615.1_202011-10-13] 6,835 sequences; 391,484,715 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq11 255 7e-63 seq12 93.3 5e-14 >seq11 Length=11238946 Score = 255 bits (282), Expect = 7e-63 Identities = 628/945 (66%), Gaps = 14/945 (1%) Strand=Plus/Plus Query 47874 TTAAGTGCTATAGATGCTAGATTACATACAGCTACCTCATTTGGATTAGTATATTGTATT 47933 || ||||| | || || |||||||| || |||||||| | | || |||| | Sbjct 5178846 TTGAGTGCGACGGAGGCCAGATTACAAACCGCTACCTCGTCGCTGCTGGTGTATTCCACA 5178905 Query 47934 ATTTCAGCACATAGATTACCACATTTGATAGTACCCAAATTTTGATGATTATTNNNNTTG 47993 ||||| | |||||||| | | ||||| || |||| ||| || || || | | Sbjct 5178906 ATTTCTGTGCATAGATTGCTGCTCTTGATGGTGCCCAGATTCTGCTGGTTGCTCTTCCTA 5178965 Query 47994 TTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATA 48053 || || || || ||||| ||||| | || || || ||||| |||| || || ||||| Sbjct 5178966 TTGCAGGCATCTTTGTAGAGCATGTATGGAGTGCCGGTTTCAGTCTGGGACTCTATGATG 5179025 Query 48054 GATTTCCAAACAGTCCTAGCCTTTATAACA-GCTCTA----GCTTTATTATCATGTTCGT 48108 | | |||||| | ||||| | ||| ||| | || || || || |||| Sbjct 5179026 GCATGCCAAACCTGCTGGGCCTTCACCACACGCTTGACGCGGCCTTCTT-TC----TCGT 5179080 Query 48109 ATTTAGTATATAACTTCTCAAATTCATCCCCATA-CACATTATCTAACCCAGGACATTCA 48167 |||| || || | ||||||||| || ||||| | ||| | || | ||| |||||||| Sbjct 5179081 ATTTGGTGTAGAGCTTCTCAAACTCCTCCCCCCAGCAC-TCATTCAGCCCGGGACATTCG 5179139 Query 48168 TTAGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGT 48227 | |||||||| | ||||| |||| | | | | || || |||| || | || || Sbjct 5179140 TCTGGACACATTAGAGACCAGTCCTGGTTACTCTCCACCCTCTTCATGAACAAGTCAGGG 5179199 Query 48228 ATCCAAAGAGC-TATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTT 48286 ||||| | | | || ||| | || || | ||| | || || || ||| | ||| | || Sbjct 5179200 ATCCACATACCGTAGAAA-AGGTCTCTGGCTCTCTGCTCCTCTTTTCCAGTGTTCTTCTT 5179258 Query 48287 AAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACC 48346 | || || ||||| | |||||| | |||||| ||||| | || || || | | || Sbjct 5179259 CAACTCCAGGAAGTCAAATATATCGGAATGCCAGGGTTCCAGGTACATGGCGAAAGCCCC 5179318 Query 48347 TGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACAT 48406 || | || || || || || || | ||| | || || ||||| |||||||| | ||| Sbjct 5179319 AGGCCTCTTGTTTCCACCCTGGTCCACATAGCGTGCGGTGTTGTTGTAAACTCTCAGCAT 5179378 Query 48407 TGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTAT 48466 ||||||| ||||| || | |||||||| || | || |||||||| ||| ||| || Sbjct 5179379 GGGGACAAGCCCATTGGAGTTGCCATTGGTGCCAGCGATGTAACTTCCCGTAGATCTGAT 5179438 Query 48467 ATTACTAATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAG 48526 || | | | ||| || || || ||| || || || || || ||| |||| || Sbjct 5179439 GCAGCTGACGGCCACACCGATTCCTCCAGCCGACTTGGAGATGAGCGCGCACTGTTTCAG 5179498 Query 48527 GGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACAT 48586 || |||||||| || || || || ||||| |||| | || || || || |||| Sbjct 5179499 CGTGTCATAAATGCCCTCGATGCTGTCATCCTTCATGGCGAGCAGGAAGCAGCTGGACAG 5179558 Query 48587 TTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTC 48646 || || || |||| |||||| | ||| || || ||||| | ||||| ||||| Sbjct 5179559 CTGTGGCCTGTTGGTACCTGCATTAAAGAGTGTCGGGGAGGCATGGGTGAACCACTTCTC 5179618 Query 48647 TGATAACAATTTATATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGA 48706 ||| | || || || |||||||| | | ||| ||||| |||||| || || | ||| Sbjct 5179619 TGACAGCAGGTTGTAGGTTTCAATCGCTGCATCAATATCTGTTTGATGGATCCCCACAGA 5179678 Query 48707 TACACGCATTAACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATA 48766 || | ||| | ||| | || |||| || | | |||| || || ||||| || || Sbjct 5179679 AACCCTCATGAGCATGTGCTGCGGTCGCTCGGCCACTTTGCCGTTGATCTTCAACAGGTA 5179738 Query 48767 TGATTTTTCCAATGTTTTAAAACCAAAATAGTTGTATGAAAAGTC 48811 || |||| |||||||| || || | ||||||||||| || Sbjct 5179739 GGACCGCTCCAGGGTTTTAAAGCCGAAGAAATTGTATGAAAAATC 5179783 >seq12 Length=10661439 Score = 93.3 bits (102), Expect = 5e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||| ||||| || || | ||||||||| | || | || ||||| ||||| ||||| | Sbjct 1964275 CCTCATCTCTGCTGATGAGCTCATTAGAATAGGTGAGGCCCGGCATGAGTCCCCTTTTCT 1964216 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 | | |||| | || || || || || ||||| ||||| || || || ||||||||||| | Sbjct 1964215 TCAGCCAGTAGATGGACGCGAACGAGCCAGAGAAGAAGATGCCCTCCACTGCTGCAAATG 1964156 Query 19103 CAACTAGTCTTTCTCC 19118 | || |||| ||| || Sbjct 1964155 CCACCAGTCGTTCCCC 1964140 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562060774829400