Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Takifugu_20rubripes_20[refseq_20GCF_5F000180615.1_202011-10-13] 6,835 sequences; 391,484,715 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq3530 140 3e-27 seq3 111 1e-18 seq1253 104 2e-16 seq7 86.0 5e-11 >seq3530 Length=2434 Score = 140 bits (154), Expect = 3e-27 Identities = 437/677 (65%), Gaps = 0/677 (0%) Strand=Plus/Minus Query 551913 ACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTACTCAAACCACTATTGAAGTA 551972 || ||||| || || ||||| || | || || || | || || ||| ||||| | Sbjct 1180 ACAGCTTGTGAGAGGGCCAAGAGAACCCTGTCCTCCAGCACCCAGGCCAGCATTGAGATC 1121 Query 551973 GATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCGAGGGCCAAATTTGAAGAT 552032 |||||| | |||||||| || || | | || | || | ||||| ||||| || Sbjct 1120 GATTCACTGTTTGAGGGCATCGACTTCTACACCTCCATCACCAGGGCTCGTTTTGAGGAG 1061 Query 552033 ATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAACAAGTTTTAAGAGATTCA 552092 | ||| ||| || || ||| ||| | || || || || ||| | | |||| | Sbjct 1060 TTGTGTGGTGACCTTTTCAGAGGAACTCTGGATCCCGTGGAGAAAGCCCTGAAAGATGCC 1001 Query 552093 AAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGTGGATCTACAAGAATTCCT 552152 || || || || ||| | ||||| | || || |||||||| || |||||||| || Sbjct 1000 AAAATGGACAAGAGTAAAATCCATGATGTCGTTCTGGTTGGTGGTTCCACAAGAATCCCC 941 Query 552153 AAAATTCGCGAAATGTTAAGTTCTTATTTCAATGGTAAAAAATTAAATGAAAGTGTTAAT 552212 ||||||| || | | || ||||| || || |||| || | || | || Sbjct 940 AAAATTCAGAAACTCCTGCAGGATTTCTTCAAGGGCAAGGAATTGAACAAGAGCATCAAC 881 Query 552213 CCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTCTGGACAAACT 552272 ||||| ||||| || || || ||||| || | ||||| || ||||| | ||| | Sbjct 880 CCAGACGAGGCGGTGGCTTACGGTGCTGCCGTCCAAGCCGCCATTCTGACAGGAGACGTG 821 Query 552273 GATGAAAAACTACAAAATATTGTACTTGTAGATGTTACTCCTCTATCTCTTGGTTTAGAA 552332 || || | || || | | || | ||||| | ||||| || || ||| | || Sbjct 820 TCGGATAATATTCAGGATCTGCTTCTGCTGGATGTGGCCCCTCTGTCGCTGGGTATCGAG 761 Query 552333 ACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTATTCCTTGTAAAAAA 552392 |||| ||||| | |||||| | || || | || || || || || ||||||| Sbjct 760 ACAGCAGGAGGAGTCATGACTGCCTTGATTGAGCGCAACACCACCATCCCCACTAAAAAA 701 Query 552393 TCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAATTCAAATTTTTGAA 552452 | | || || | || ||||| || || || | | || || ||| | | |||| Sbjct 700 ACACAGGTCTTCACCACCTATTCTGACAACCAGCCGGGGGTCCTCATCCAAGTGTATGAA 641 Query 552453 GGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTTAATTTAGAAGGTATT 552512 ||||||||| | || || || || || | || || | ||| | | || | Sbjct 640 GGAGAAAGAGCCATGACCAAGGACAACAACCTCCTGGGCAAGTTTGAGCTGTCGGGCCTC 581 Query 552513 CCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCCAATGGA 552572 || |||||||| || || || ||||| || || || || ||||||||||||||||| || Sbjct 580 CCGCCTGCTCCCCGAGGGGTCCCGCAGATCGAGGTCACCTTCGATATCGATGCCAACGGC 521 Query 552573 ATTTTGAATGTGACTGC 552589 |||||||| ||| |||| Sbjct 520 ATTTTGAACGTGTCTGC 504 >seq3 Length=13093193 Score = 111 bits (122), Expect = 1e-18 Identities = 430/673 (64%), Gaps = 2/673 (0%) Strand=Plus/Plus Query 551913 ACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTACTCAAACCACTATTGAAGTA 551972 || || ||||| | ||||| || |||| || || | || || ||| || ||| | Sbjct 6071885 ACGGCCTGCGAGCGCGCCAAGCGGACTCTGTCCTCCAGCACCCAGGCCAGCATCGAAATC 6071944 Query 551973 GATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCGAGGGCCAAATTTGAAGAT 552032 || || | |||||||| || || | | || | || | || ||| |||||||| Sbjct 6071945 GACTCTCTGTTTGAGGGCATCGACTTCTACACCTCCATCACAAGAGCCCGGTTTGAAGAG 6072004 Query 552033 ATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAACAAGTTTTAAGAGATTCA 552092 | |||||| ||||| ||| ||| | || || ||||| | | ||| ||| | Sbjct 6072005 CTCAATTCTGAGCTCTTCAGAGGAACCCTGGACCCGGTAGAGAAGGCTTTGCAGGATGCC 6072064 Query 552093 AAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGTGGATCTACAAGAATTCCT 552152 ||| | |||||| ||| | || ||||| || ||||| ||||| || || |||||||| Sbjct 6072065 AAGCTGGATAAAACCAGCATCCACGAAATCGTTCTTGTCGGTGGCTCCACGAGAATTCCC 6072124 Query 552153 AAAATTCGCGAAATGTTA-AGTTCTTATTTCAATGGTAAAAAATTAAATGAAAGTGTTAA 552211 ||||| | | | || || ||| ||| || || | | | | || | || | || Sbjct 6072125 AAAATCCAAAAGCTCTTGCAGGACTTCTTT-AACGGCAGAGAGCTGAACAAGAGCATCAA 6072183 Query 552212 TCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTCTGGACAAAC 552271 ||||||||| ||||| |||||||| || || | || || || || || || | || Sbjct 6072184 TCCAGATGAAGCTGTGGCCTATGGCGCAGCGGTCCAGGCCGCCATCCTCATGGGCGACAC 6072243 Query 552272 TGATGAAAAACTACAAAATATTGTACTTGTAGATGTTACTCCTCTATCTCTTGGTTTAGA 552331 | || || | || || | | || | ||||| |||| || ||||| ||| | || Sbjct 6072244 TTCAGAGAATGTCCAGGATCTCCTGCTGCTGGATGTGGCTCCGCTCTCTCTGGGTATCGA 6072303 Query 552332 AACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTATTCCTTGTAAAAA 552391 || | || || | ||||| ||| ||| | | || || || || || || | Sbjct 6072304 GACCGCCGGTGGGGTGATGACACCTCTCATCAAGCGGAACACCACCATCCCCACCAAGCA 6072363 Query 552392 ATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAATTCAAATTTTTGA 552451 | | | || || || || || || || || | | ||| ||||| | | ||| Sbjct 6072364 GACCCAGATCTTCTCCACATACTCGGACAACCAGCCAGGTGTGCTGATTCAGGTGTATGA 6072423 Query 552452 AGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTTAATTTAGAAGGTAT 552511 || || ||| | || || || || || | || || | ||| | | || || Sbjct 6072424 GGGCGAGAGAGCCATGACCAAGGACAACAACCTCCTGGGCAAATTTGAACTCACCGGCAT 6072483 Query 552512 TCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCCAATGG 552571 |||||| |||||||| || || ||||| || || || || ||||| ||||| ||||| || Sbjct 6072484 TCCTCCCGCTCCTCGGGGCGTGCCGCAGATAGAGGTGACGTTCGACATCGACGCCAACGG 6072543 Query 552572 AATTTTGAATGTG 552584 || |||| ||| Sbjct 6072544 CATCCTGAACGTG 6072556 Score = 102 bits (112), Expect = 7e-16 Identities = 173/248 (70%), Gaps = 6/248 (2%) Strand=Plus/Plus Query 549995 ATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTT 550054 || || || ||| | || ||||| || || || || |||| || | || ||||| Sbjct 6071111 ATTGGCATTGATCTGGGCACCACCTACTCCTGCGTGGGAGTTTTCCAGCACGGCAAAGTG 6071170 Query 550055 GAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAA 550114 || ||||||||||| ||||| |||||||| || ||||| ||||| | ||||| || Sbjct 6071171 GAGATTATTGCCAACGATCAGGGTAACAGGACCACTCCCAGCTATGTGGCCTTCACTGAC 6071230 Query 550115 ACTGAACATTTAGTTGGTGATGCAGCAAAATATCA---AGCCACTGGTAATCCTACCAAT 550171 || || | | || ||||| || ||| | || |||| || || || ||||| Sbjct 6071231 ACAGAGAGGCTGATCGGAGATGCTGCCAAAAACCAGGTTGCCA-TG--AACCCCACCAAC 6071287 Query 550172 ACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCA 550231 || || |||||||| |||||| | || || || | ||||| ||| |||| || ||| || Sbjct 6071288 ACAATCTTTGATGCCAAACGTCTTATCGGTAGGAAGTTTAACGATGCGACGGTCCAGTCA 6071347 Query 550232 GATATGAA 550239 || ||||| Sbjct 6071348 GACATGAA 6071355 >seq1253 Length=284903 Score = 104 bits (114), Expect = 2e-16 Identities = 101/130 (78%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457 |||| ||||| || || ||||| || || ||||| || || || ||||| || || |||| Sbjct 226174 ATGCTGTAATTACGGTGCCAGCCTACTTCAATGATTCGCAGCGCCAAGCCACAAAGGATG 226233 Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517 | || || |||| || |||||||| ||||| || |||||||| ||||||||||| Sbjct 226234 CCGGCACAATCTCTGGCCTCAATGTTCTGCGTATCATTAATGAACCAACTGCTGCTGCTA 226293 Query 550518 TTGCATATGG 550527 |||||||||| Sbjct 226294 TTGCATATGG 226303 Score = 86.0 bits (94), Expect = 5e-11 Identities = 107/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 549998 GGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTTGAA 550057 ||||| ||| | ||||| || || ||||||||||| | ||| |||| ||||||||| Sbjct 225443 GGTATCGATCTGGGAACAACCTACTCCTGTGTTGGTGTGTTTCAACATGGAAAAGTTGAA 225502 Query 550058 ATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAAACT 550117 || |||||||||||||| || ||||| || || || || || ||||||| || | Sbjct 225503 ATCATTGCCAATGATCAGGGCAACAGGACCACACCCAGCTACGTGGCTTTCACTGACTCA 225562 Query 550118 GAACATTTAGTTGGTGATGCAGCAAAA 550144 || | |||| |||||||| ||| Sbjct 225563 GAGAGGCTGATTGGAGATGCAGCCAAA 225589 >seq7 Length=14304132 Score = 86.0 bits (94), Expect = 5e-11 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457 |||| || || || || || || || || |||||||| || || ||||| || ||||||| Sbjct 10632395 ATGCTGTCATCACAGTTCCTGCTTACTTCAATGACTCCCAGCGCCAAGCCACCAAAGATG 10632454 Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517 |||| || ||||| || ||||| || || || ||||| ||||| || || || || Sbjct 10632455 CTGGGACCATCGCTGGGCTCAATGTGCTGCGCATCATCAACGAACCCACAGCCGCAGCCA 10632514 Query 550518 TTGCATATGGACTTGATAAA 550537 | || ||||| || || ||| Sbjct 10632515 TCGCTTATGGCCTGGACAAA 10632534 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4028934534374150