Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Takifugu_20rubripes_20[refseq_20GCF_5F000180615.1_202011-10-13]
6,835 sequences; 391,484,715 total letters
Query= NC_020104.1
Length=1021348
Score E
Sequences producing significant alignments: (Bits) Value
seq1253 107 1e-17
seq3 104 2e-16
seq1802 96.9 2e-14
seq7 87.8 1e-11
seq101 86.0 4e-11
seq5 86.0 4e-11
>seq1253
Length=284903
Score = 107 bits (118), Expect = 1e-17
Identities = 109/142 (77%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 474735 ATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATG 474794
|||| |||||||| || ||||| || || |||||||| || || ||||| || || ||||
Sbjct 226174 ATGCTGTAATTACGGTGCCAGCCTACTTCAATGATTCGCAGCGCCAAGCCACAAAGGATG 226233
Query 474795 CGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCAC 474854
| || | ||| | || || |||||| | ||||| |||||||||||||| || || ||
Sbjct 226234 CCGGCACAATCTCTGGCCTCAATGTTCTGCGTATCATTAATGAACCAACTGCTGCTGCTA 226293
Query 474855 TTGCTTATGGTCTTGATAAGAA 474876
|||| ||||| | || |||||
Sbjct 226294 TTGCATATGGGTTGGACAAGAA 226315
Score = 89.7 bits (98), Expect = 3e-12
Identities = 118/164 (72%), Gaps = 0/164 (0%)
Strand=Plus/Plus
Query 474329 GCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAA 474388
||| ||||||| ||| | ||||| || ||| ||||| | ||| | ||| |||| |||
Sbjct 225437 GCAGTTGGTATCGATCTGGGAACAACCTACTCCTGTGTTGGTGTGTTTCAACATGGAAAA 225496
Query 474389 GTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACT 474448
|| ||||| ||||||||||| || || || || || ||||| || || |||| |||
Sbjct 225497 GTTGAAATCATTGCCAATGATCAGGGCAACAGGACCACACCCAGCTACGTGGCTTTCACT 225556
Query 474449 GAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGC 474492
|| | || || ||||||||||| || ||| | || | |||
Sbjct 225557 GACTCAGAGAGGCTGATTGGAGATGCAGCCAAAAACCAGGTTGC 225600
>seq3
Length=13093193
Score = 104 bits (114), Expect = 2e-16
Identities = 358/554 (65%), Gaps = 6/554 (1%)
Strand=Plus/Plus
Query 474324 GAATTGCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATG 474383
|||| | ||||| |||||| | || || || ||| || || | |||| || | |
Sbjct 6071103 GAATATCCATTGGCATTGATCTGGGCACCACCTACTCCTGCGTGGGAGTTTTCCAGCACG 6071162
Query 474384 GTAAAGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTT 474443
| ||||| || || |||||||| || || ||||| || || || || ||||| | |
Sbjct 6071163 GCAAAGTGGAGATTATTGCCAACGATCAGGGTAACAGGACCACTCCCAGCTATGTGGCCT 6071222
Query 474444 TTACTGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTG 474503
| ||||| || || || || ||||||||||| ||| | || | ||| || ||
Sbjct 6071223 TCACTGACACAGAGAGGCTGATCGGAGATGCTGCCAAAAACCAGGTTGCCATGAACCCCA 6071282
Query 474504 TTAATACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCC 474563
|| || || |||||||| ||| | | || ||| | || ||| | ||| | || ||||
Sbjct 6071283 CCAACACAATCTTTGATGCCAAACGTCTTATCGGTAGGAAGTTTAACGATGCGACGGTCC 6071342
Query 474564 AATCTGATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATA--TAT 474621
| || || ||| ||||| ||||| ||||| | || | || | ||| | ||
Sbjct 6071343 AGTCAGACATGAAATTATGGCCCTTTAAAGTGATCAGTGATAACGGGAGGCCAAAGGTAC 6071402
Query 474622 AGAAGCAATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGT 474681
|| | | || | ||| || || || || | || || |||| || || |||||
Sbjct 6071403 AGGTGGAGTATA--AAGGGGAGACCAAGGCCTTCTATCCAGAGGAAATCTCCTCCATGGT 6071460
Query 474682 TTTAGCCAAAATGAAACAAACCGC-GAGCTCATATCTTGGACAAGAAGTAACTGATGCAG 474740
| | |||||||| | | || ||| | || || || || || | ||||||
Sbjct 6071461 CCTGGTGAAAATGAAGGAGATAGCTGAG-GCCTACCTCGGCCAGAGGGTGTCAAATGCAG 6071519
Query 474741 TAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAA 474800
| || || ||||| || |||||||| || || || | ||||| || || || || ||
Sbjct 6071520 TCATCACCGTTCCGGCTTATTTTAACGACTCCCAGAGGCAAGCTACCAAGGACGCCGGTG 6071579
Query 474801 GAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTT 474860
|| | || || || || | | || || || || || ||||| || || | ||||
Sbjct 6071580 TGATCTCTGGGCTGAACGTCCTGAGGATCATCAACGAGCCCACAGCGGCAGCCATCGCTT 6071639
Query 474861 ATGGTCTTGATAAG 474874
||||| | || |||
Sbjct 6071640 ATGGTTTGGACAAG 6071653
>seq1802
Length=17140
Score = 96.9 bits (106), Expect = 2e-14
Identities = 353/548 (64%), Gaps = 6/548 (1%)
Strand=Plus/Minus
Query 474329 GCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAA 474388
|||||||| || || | || || || ||| |||| | |||| || |||| |||
Sbjct 915 GCAATTGGCATCGACCTGGGCACCACCTACTCCCGTGTGGGGGTTTTCCAGCATGGAAAA 856
Query 474389 GTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACT 474448
|||||||| |||||||| ||||| || || || || || || ||||| | || |||
Sbjct 855 GTAGAAATCATTGCCAACGACCAGGGCAACAGGACCACCCCCAGCTATGTGGCCTTCACT 796
Query 474449 GAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAAT 474508
|| || || || || || || || || || | || | || | || || ||
Sbjct 795 GACACGGAGAGGCTCATCGGGGACGCGGCAAAGAACCAGGTGGCCTTGAACCCCAGCAAC 736
Query 474509 ACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCT 474568
|| | ||||||||||| ||| ||||||| | | || || ||| |||| || ||| ||
Sbjct 735 ACCGTGTTTGATGCTAAGAGACTGATTGGGAGAAGATTGGAGGATCCCACCGTTCAAGCT 676
Query 474569 GATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACC--ATATATAGAAG 474626
|| || || ||||| || ||||| | | ||| || || || | || || |
Sbjct 675 GACATAAAACACTGGCCATTCCAGGTGGTTGGAGATGGAGGGAAGCCCAAAATCCAGGTG 616
Query 474627 CAATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAG 474686
|||||| ||| || || || | || || | ||||| || |||||| | |
Sbjct 615 GAATACA--AAGGAGAGGAAAAGAGCTTCTACCCTGAGGAGATTTCCTCTATGGTTCTGG 558
Query 474687 CCAAAATGAAACAAACCGC-GAGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAATT 474745
|| ||||| | | ||| ||| | || || || || || ||||||| || ||
Sbjct 557 TGAAGATGAAGGAGATCGCAGAG-GCCTACCTCGGTCAGAGGGTGTCTGATGCCGTCATC 499
Query 474746 ACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATT 474805
|| || ||||| || || || || ||||| | || || || ||||| || || ||
Sbjct 498 ACGGTCCCAGCGTACTTCAACGACTCTCAGAGACAGGCGACCAAAGACGCCGGCGTCATC 439
Query 474806 GCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGT 474865
|| || | || || | | || || || || || || || || || |||| || |||
Sbjct 438 GCCGGATTGAACGTCCTGAGGATCATCAACGAGCCGACGGCTGCAGCCTTTGCGTACGGT 379
Query 474866 CTTGATAA 474873
|| || ||
Sbjct 378 CTGGACAA 371
Score = 86.0 bits (94), Expect = 4e-11
Identities = 179/267 (67%), Gaps = 0/267 (0%)
Strand=Plus/Plus
Query 474329 GCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAA 474388
|| ||||| || || | ||||| || ||| ||||| | |||| || |||| |||
Sbjct 16777 GCGATTGGCATCGACCTGGGAACCACCTACTCCTGTGTGGGGGTTTTCCAGCATGGAAAA 16836
Query 474389 GTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACT 474448
|||||||| || ||||| ||||| || || || || || || ||||| | || | |
Sbjct 16837 GTAGAAATCATCGCCAACGACCAGGGCAACAGGACCACCCCCAGCTATGTGGCCTTCATT 16896
Query 474449 GAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAAT 474508
|| || || ||| || || || || || || | || | || | || || ||
Sbjct 16897 GACACGGAGAGTCTCATCGGGGACGCGGCAAAGAACCAGGTGGCCTTGAACCCCAGCAAC 16956
Query 474509 ACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCT 474568
|| | ||||||||||| ||| ||||||| | | || || ||| |||| || ||| |
Sbjct 16957 ACAGTGTTTGATGCTAAGAGACTGATTGGGAGAAGATTGGAGGATCCCACCGTTCAAGGT 17016
Query 474569 GATATGCGTCATTGGCCTTTTAAGGTG 474595
|| || || ||||| || ||||||
Sbjct 17017 GACATAAAACACTGGCCATTCAAGGTG 17043
>seq7
Length=14304132
Score = 87.8 bits (96), Expect = 1e-11
Identities = 104/141 (74%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 476032 TGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAAGG 476091
||||||||||||| | || || || ||||| | | || | ||| | || ||
Sbjct 10633558 TGAAGGTGAAAGAGCCATGACCAAGGACAATAATATCTTGGGCAAGTTTGAGCTGACTGG 10633617
Query 476092 TATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAA 476151
||||| ||||| |||||||| || || || ||||| || || ||||| |||||||| ||
Sbjct 10633618 GATTCCACCTGCACCCAGAGGCGTCCCCCAGATTGAGGTGACCTTTGACATTGATGCCAA 10633677
Query 476152 TGGTATTCTTAATGTTACTGC 476172
||| ||||||||||| ||||
Sbjct 10633678 TGGCATTCTTAATGTGTCTGC 10633698
>seq101
Length=99616
Score = 86.0 bits (94), Expect = 4e-11
Identities = 179/267 (67%), Gaps = 0/267 (0%)
Strand=Plus/Plus
Query 474329 GCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAA 474388
|| ||||| || || | ||||| || ||| ||||| | |||| || |||| |||
Sbjct 6818 GCGATTGGCATCGACCTGGGAACCACCTACTCCTGTGTGGGGGTTTTCCAGCATGGAAAA 6877
Query 474389 GTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACT 474448
|||||||| || ||||| ||||| || || || || || || ||||| | || | |
Sbjct 6878 GTAGAAATCATCGCCAACGACCAGGGCAACAGGACCACCCCCAGCTATGTGGCCTTCATT 6937
Query 474449 GAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAAT 474508
|| || || ||| || || || || || || | || | || | || || ||
Sbjct 6938 GACACGGAGAGTCTCATCGGGGACGCGGCAAAGAACCAGGTGGCCTTGAACCCCAGCAAC 6997
Query 474509 ACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCT 474568
|| | ||||||||||| ||| ||||||| | | || || ||| |||| || ||| |
Sbjct 6998 ACAGTGTTTGATGCTAAGAGACTGATTGGGAGAAGATTGGAGGATCCCACCGTTCAAGGT 7057
Query 474569 GATATGCGTCATTGGCCTTTTAAGGTG 474595
|| || || ||||| || ||||||
Sbjct 7058 GACATAAAACACTGGCCATTCAAGGTG 7084
>seq5
Length=12184708
Score = 86.0 bits (94), Expect = 4e-11
Identities = 179/267 (67%), Gaps = 0/267 (0%)
Strand=Plus/Plus
Query 474329 GCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAA 474388
|| ||||| || || | ||||| || ||| ||||| | |||| || |||| |||
Sbjct 10974672 GCGATTGGCATCGACCTGGGAACCACCTACTCCTGTGTGGGGGTTTTCCAGCATGGAAAA 10974731
Query 474389 GTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACT 474448
|||||||| || ||||| ||||| || || || || || || ||||| | || ||
Sbjct 10974732 GTAGAAATCATCGCCAACGACCAGGGCAACAGGACCACCCCCAGCTATGTGGCCTTCACC 10974791
Query 474449 GAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAAT 474508
|| || || || || || || || || || | || | || | || || ||
Sbjct 10974792 GACACGGAGAGGCTCATCGGGGACGCGGCAAAGAACCAGGTGGCCTTGAACCCCAGCAAC 10974851
Query 474509 ACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCT 474568
|| | ||||||||||| ||| ||||||| | | || || ||| |||| || ||| ||
Sbjct 10974852 ACCGTGTTTGATGCTAAGAGACTGATTGGGAGAAGATTGGAGGATCCCACCGTTCAAGCT 10974911
Query 474569 GATATGCGTCATTGGCCTTTTAAGGTG 474595
|| || || ||||| || ||||||
Sbjct 10974912 GACATAAAACACTGGCCATTCAAGGTG 10974938
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3267886013686580
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