Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Takifugu_20rubripes_20[refseq_20GCF_5F000180615.1_202011-10-13] 6,835 sequences; 391,484,715 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq1253 107 1e-17 seq3 104 2e-16 seq1802 96.9 2e-14 seq7 87.8 1e-11 seq101 86.0 4e-11 seq5 86.0 4e-11 >seq1253 Length=284903 Score = 107 bits (118), Expect = 1e-17 Identities = 109/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 474735 ATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATG 474794 |||| |||||||| || ||||| || || |||||||| || || ||||| || || |||| Sbjct 226174 ATGCTGTAATTACGGTGCCAGCCTACTTCAATGATTCGCAGCGCCAAGCCACAAAGGATG 226233 Query 474795 CGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCAC 474854 | || | ||| | || || |||||| | ||||| |||||||||||||| || || || Sbjct 226234 CCGGCACAATCTCTGGCCTCAATGTTCTGCGTATCATTAATGAACCAACTGCTGCTGCTA 226293 Query 474855 TTGCTTATGGTCTTGATAAGAA 474876 |||| ||||| | || ||||| Sbjct 226294 TTGCATATGGGTTGGACAAGAA 226315 Score = 89.7 bits (98), Expect = 3e-12 Identities = 118/164 (72%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 474329 GCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAA 474388 ||| ||||||| ||| | ||||| || ||| ||||| | ||| | ||| |||| ||| Sbjct 225437 GCAGTTGGTATCGATCTGGGAACAACCTACTCCTGTGTTGGTGTGTTTCAACATGGAAAA 225496 Query 474389 GTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACT 474448 || ||||| ||||||||||| || || || || || ||||| || || |||| ||| Sbjct 225497 GTTGAAATCATTGCCAATGATCAGGGCAACAGGACCACACCCAGCTACGTGGCTTTCACT 225556 Query 474449 GAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGC 474492 || | || || ||||||||||| || ||| | || | ||| Sbjct 225557 GACTCAGAGAGGCTGATTGGAGATGCAGCCAAAAACCAGGTTGC 225600 >seq3 Length=13093193 Score = 104 bits (114), Expect = 2e-16 Identities = 358/554 (65%), Gaps = 6/554 (1%) Strand=Plus/Plus Query 474324 GAATTGCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATG 474383 |||| | ||||| |||||| | || || || ||| || || | |||| || | | Sbjct 6071103 GAATATCCATTGGCATTGATCTGGGCACCACCTACTCCTGCGTGGGAGTTTTCCAGCACG 6071162 Query 474384 GTAAAGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTT 474443 | ||||| || || |||||||| || || ||||| || || || || ||||| | | Sbjct 6071163 GCAAAGTGGAGATTATTGCCAACGATCAGGGTAACAGGACCACTCCCAGCTATGTGGCCT 6071222 Query 474444 TTACTGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTG 474503 | ||||| || || || || ||||||||||| ||| | || | ||| || || Sbjct 6071223 TCACTGACACAGAGAGGCTGATCGGAGATGCTGCCAAAAACCAGGTTGCCATGAACCCCA 6071282 Query 474504 TTAATACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCC 474563 || || || |||||||| ||| | | || ||| | || ||| | ||| | || |||| Sbjct 6071283 CCAACACAATCTTTGATGCCAAACGTCTTATCGGTAGGAAGTTTAACGATGCGACGGTCC 6071342 Query 474564 AATCTGATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATA--TAT 474621 | || || ||| ||||| ||||| ||||| | || | || | ||| | || Sbjct 6071343 AGTCAGACATGAAATTATGGCCCTTTAAAGTGATCAGTGATAACGGGAGGCCAAAGGTAC 6071402 Query 474622 AGAAGCAATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGT 474681 || | | || | ||| || || || || | || || |||| || || ||||| Sbjct 6071403 AGGTGGAGTATA--AAGGGGAGACCAAGGCCTTCTATCCAGAGGAAATCTCCTCCATGGT 6071460 Query 474682 TTTAGCCAAAATGAAACAAACCGC-GAGCTCATATCTTGGACAAGAAGTAACTGATGCAG 474740 | | |||||||| | | || ||| | || || || || || | |||||| Sbjct 6071461 CCTGGTGAAAATGAAGGAGATAGCTGAG-GCCTACCTCGGCCAGAGGGTGTCAAATGCAG 6071519 Query 474741 TAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAA 474800 | || || ||||| || |||||||| || || || | ||||| || || || || || Sbjct 6071520 TCATCACCGTTCCGGCTTATTTTAACGACTCCCAGAGGCAAGCTACCAAGGACGCCGGTG 6071579 Query 474801 GAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTT 474860 || | || || || || | | || || || || || ||||| || || | |||| Sbjct 6071580 TGATCTCTGGGCTGAACGTCCTGAGGATCATCAACGAGCCCACAGCGGCAGCCATCGCTT 6071639 Query 474861 ATGGTCTTGATAAG 474874 ||||| | || ||| Sbjct 6071640 ATGGTTTGGACAAG 6071653 >seq1802 Length=17140 Score = 96.9 bits (106), Expect = 2e-14 Identities = 353/548 (64%), Gaps = 6/548 (1%) Strand=Plus/Minus Query 474329 GCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAA 474388 |||||||| || || | || || || ||| |||| | |||| || |||| ||| Sbjct 915 GCAATTGGCATCGACCTGGGCACCACCTACTCCCGTGTGGGGGTTTTCCAGCATGGAAAA 856 Query 474389 GTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACT 474448 |||||||| |||||||| ||||| || || || || || || ||||| | || ||| Sbjct 855 GTAGAAATCATTGCCAACGACCAGGGCAACAGGACCACCCCCAGCTATGTGGCCTTCACT 796 Query 474449 GAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAAT 474508 || || || || || || || || || || | || | || | || || || Sbjct 795 GACACGGAGAGGCTCATCGGGGACGCGGCAAAGAACCAGGTGGCCTTGAACCCCAGCAAC 736 Query 474509 ACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCT 474568 || | ||||||||||| ||| ||||||| | | || || ||| |||| || ||| || Sbjct 735 ACCGTGTTTGATGCTAAGAGACTGATTGGGAGAAGATTGGAGGATCCCACCGTTCAAGCT 676 Query 474569 GATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACC--ATATATAGAAG 474626 || || || ||||| || ||||| | | ||| || || || | || || | Sbjct 675 GACATAAAACACTGGCCATTCCAGGTGGTTGGAGATGGAGGGAAGCCCAAAATCCAGGTG 616 Query 474627 CAATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAG 474686 |||||| ||| || || || | || || | ||||| || |||||| | | Sbjct 615 GAATACA--AAGGAGAGGAAAAGAGCTTCTACCCTGAGGAGATTTCCTCTATGGTTCTGG 558 Query 474687 CCAAAATGAAACAAACCGC-GAGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAATT 474745 || ||||| | | ||| ||| | || || || || || ||||||| || || Sbjct 557 TGAAGATGAAGGAGATCGCAGAG-GCCTACCTCGGTCAGAGGGTGTCTGATGCCGTCATC 499 Query 474746 ACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATT 474805 || || ||||| || || || || ||||| | || || || ||||| || || || Sbjct 498 ACGGTCCCAGCGTACTTCAACGACTCTCAGAGACAGGCGACCAAAGACGCCGGCGTCATC 439 Query 474806 GCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGT 474865 || || | || || | | || || || || || || || || || |||| || ||| Sbjct 438 GCCGGATTGAACGTCCTGAGGATCATCAACGAGCCGACGGCTGCAGCCTTTGCGTACGGT 379 Query 474866 CTTGATAA 474873 || || || Sbjct 378 CTGGACAA 371 Score = 86.0 bits (94), Expect = 4e-11 Identities = 179/267 (67%), Gaps = 0/267 (0%) Strand=Plus/Plus Query 474329 GCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAA 474388 || ||||| || || | ||||| || ||| ||||| | |||| || |||| ||| Sbjct 16777 GCGATTGGCATCGACCTGGGAACCACCTACTCCTGTGTGGGGGTTTTCCAGCATGGAAAA 16836 Query 474389 GTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACT 474448 |||||||| || ||||| ||||| || || || || || || ||||| | || | | Sbjct 16837 GTAGAAATCATCGCCAACGACCAGGGCAACAGGACCACCCCCAGCTATGTGGCCTTCATT 16896 Query 474449 GAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAAT 474508 || || || ||| || || || || || || | || | || | || || || Sbjct 16897 GACACGGAGAGTCTCATCGGGGACGCGGCAAAGAACCAGGTGGCCTTGAACCCCAGCAAC 16956 Query 474509 ACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCT 474568 || | ||||||||||| ||| ||||||| | | || || ||| |||| || ||| | Sbjct 16957 ACAGTGTTTGATGCTAAGAGACTGATTGGGAGAAGATTGGAGGATCCCACCGTTCAAGGT 17016 Query 474569 GATATGCGTCATTGGCCTTTTAAGGTG 474595 || || || ||||| || |||||| Sbjct 17017 GACATAAAACACTGGCCATTCAAGGTG 17043 >seq7 Length=14304132 Score = 87.8 bits (96), Expect = 1e-11 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 476032 TGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAAGG 476091 ||||||||||||| | || || || ||||| | | || | ||| | || || Sbjct 10633558 TGAAGGTGAAAGAGCCATGACCAAGGACAATAATATCTTGGGCAAGTTTGAGCTGACTGG 10633617 Query 476092 TATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAA 476151 ||||| ||||| |||||||| || || || ||||| || || ||||| |||||||| || Sbjct 10633618 GATTCCACCTGCACCCAGAGGCGTCCCCCAGATTGAGGTGACCTTTGACATTGATGCCAA 10633677 Query 476152 TGGTATTCTTAATGTTACTGC 476172 ||| ||||||||||| |||| Sbjct 10633678 TGGCATTCTTAATGTGTCTGC 10633698 >seq101 Length=99616 Score = 86.0 bits (94), Expect = 4e-11 Identities = 179/267 (67%), Gaps = 0/267 (0%) Strand=Plus/Plus Query 474329 GCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAA 474388 || ||||| || || | ||||| || ||| ||||| | |||| || |||| ||| Sbjct 6818 GCGATTGGCATCGACCTGGGAACCACCTACTCCTGTGTGGGGGTTTTCCAGCATGGAAAA 6877 Query 474389 GTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACT 474448 |||||||| || ||||| ||||| || || || || || || ||||| | || | | Sbjct 6878 GTAGAAATCATCGCCAACGACCAGGGCAACAGGACCACCCCCAGCTATGTGGCCTTCATT 6937 Query 474449 GAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAAT 474508 || || || ||| || || || || || || | || | || | || || || Sbjct 6938 GACACGGAGAGTCTCATCGGGGACGCGGCAAAGAACCAGGTGGCCTTGAACCCCAGCAAC 6997 Query 474509 ACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCT 474568 || | ||||||||||| ||| ||||||| | | || || ||| |||| || ||| | Sbjct 6998 ACAGTGTTTGATGCTAAGAGACTGATTGGGAGAAGATTGGAGGATCCCACCGTTCAAGGT 7057 Query 474569 GATATGCGTCATTGGCCTTTTAAGGTG 474595 || || || ||||| || |||||| Sbjct 7058 GACATAAAACACTGGCCATTCAAGGTG 7084 >seq5 Length=12184708 Score = 86.0 bits (94), Expect = 4e-11 Identities = 179/267 (67%), Gaps = 0/267 (0%) Strand=Plus/Plus Query 474329 GCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAA 474388 || ||||| || || | ||||| || ||| ||||| | |||| || |||| ||| Sbjct 10974672 GCGATTGGCATCGACCTGGGAACCACCTACTCCTGTGTGGGGGTTTTCCAGCATGGAAAA 10974731 Query 474389 GTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACT 474448 |||||||| || ||||| ||||| || || || || || || ||||| | || || Sbjct 10974732 GTAGAAATCATCGCCAACGACCAGGGCAACAGGACCACCCCCAGCTATGTGGCCTTCACC 10974791 Query 474449 GAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAAT 474508 || || || || || || || || || || | || | || | || || || Sbjct 10974792 GACACGGAGAGGCTCATCGGGGACGCGGCAAAGAACCAGGTGGCCTTGAACCCCAGCAAC 10974851 Query 474509 ACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCT 474568 || | ||||||||||| ||| ||||||| | | || || ||| |||| || ||| || Sbjct 10974852 ACCGTGTTTGATGCTAAGAGACTGATTGGGAGAAGATTGGAGGATCCCACCGTTCAAGCT 10974911 Query 474569 GATATGCGTCATTGGCCTTTTAAGGTG 474595 || || || ||||| || |||||| Sbjct 10974912 GACATAAAACACTGGCCATTCAAGGTG 10974938 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3267886013686580