Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Takifugu_20rubripes_20[refseq_20GCF_5F000180615.1_202011-10-13] 6,835 sequences; 391,484,715 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq1253 109 4e-18 seq7 91.5 1e-12 >seq1253 Length=284903 Score = 109 bits (120), Expect = 4e-18 Identities = 102/130 (78%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 282344 CCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCA 282403 ||||| |||| |||||||||||||||||||||||| || | || |||||| || |||| Sbjct 226303 CCATATGCAATAGCAGCAGCAGTTGGTTCATTAATGATACGCAGAACATTGAGGCCAGAG 226244 Query 282404 ATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTA 282463 ||| | || ||||| || |||||||| | || ||||| || || || || || || ||| Sbjct 226243 ATTGTGCCGGCATCCTTTGTGGCTTGGCGCTGCGAATCATTGAAGTAGGCTGGCACCGTA 226184 Query 282464 ATAACGGCAT 282473 || || |||| Sbjct 226183 ATTACAGCAT 226174 Score = 96.9 bits (106), Expect = 3e-14 Identities = 133/186 (72%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 282690 CAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATCAGAT 282749 |||| | || ||||| || || | ||| | || | ||||||||||||||||||||| Sbjct 225626 CAAACACTGTGTTGGTGGGGTTCATGGCAACCTGGTTTTTGGCTGCATCTCCAATCAGCC 225567 Query 282750 GTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAA 282809 |||| || || || | || || || || || | || || |||||||| |||| Sbjct 225566 TCTCTGAGTCAGTGAAAGCCACGTAGCTGGGTGTGGTCCTGTTGCCCTGATCATTGGCAA 225507 Query 282810 TAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAA 282869 | ||||||||||| |||| ||| | ||||| ||||| | |||||||| | ||| | Sbjct 225506 TGATTTCAACTTTTCCATGTTGAAACACACCAACACAGGAGTAGGTTGTTCCCAGATCGA 225447 Query 282870 TACCAA 282875 |||||| Sbjct 225446 TACCAA 225441 >seq7 Length=14304132 Score = 91.5 bits (100), Expect = 1e-12 Identities = 110/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 281416 TTTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAAT 281475 ||| || || |||| |||||||||||| ||||||||||| | ||||| || || ||||| Sbjct 10633708 TTTGTCGGCTGCAGACACATTAAGAATGCCATTGGCATCAATGTCAAAGGTCACCTCAAT 10633649 Query 281476 TTGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATT 281535 || ||||| ||||| | |||||||| ||||| || | ||| | |||| |||| Sbjct 10633648 CTGGGGGACGCCTCTGGGTGCAGGTGGAATCCCAGTCAGCTCAAACTTGCCCAAGATATT 10633589 Query 281536 ATTATCTTTAGTGAATTTTCGTTCACCCTC 281565 ||| || || || | || |||||| || Sbjct 10633588 ATTGTCCTTGGTCATGGCTCTTTCACCTTC 10633559 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740294830384710