Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Takifugu_20rubripes_20[refseq_20GCF_5F000180615.1_202011-10-13] 6,835 sequences; 391,484,715 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq11 178 1e-39 seq15 138 1e-27 seq6 91.5 1e-13 >seq11 Length=11238946 Score = 178 bits (196), Expect = 1e-39 Identities = 833/1300 (64%), Gaps = 36/1300 (3%) Strand=Plus/Plus Query 148237 TCAGGTCATCGATCAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCACGCGCCGCA 148296 ||||||| | || || | | || || | ||| ||||| |||| || || | || Sbjct 5178265 TCAGGTCTTTGAGGAGGTGAGGGTTGACAATCTGGAACTCCCCGGACAGGACCCTGCGGG 5178324 Query 148297 GATACACGTTGCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGCGCGGTCG 148356 || | |||||| || | | ||| | |||||||||||||||| ||||| ||||| | Sbjct 5178325 TGTAGATGTTGCTGGTGTAGGCTTCGATAGACTCGTTGTTGCCCAGGATCTGGGCGGTTG 5178384 Query 148357 TTGCCGTGGGCATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTTTATTTTGC 148416 || |||||||| |||| ||||| ||| | || ||| | || ||||| Sbjct 5178385 AGGCGGTGGGCATCGGGGCTAAGAGCAGACTGTTCCTCACGCCGTGCTTGGCGATTTTTT 5178444 Query 148417 GCTTCAGAGCCGCCCAGTCCCAGAG--CGGCGACGGTGTCACGTTCCACATGTCGTACTG 148474 ||| || | ||||||| | || ||| | || ||| | ||||||||||||||| Sbjct 5178445 CCTTTAGCAGCTTCCAGTCCAACAGGTCGGTG--GGCGTCTTCTCCCACATGTCGTACTG 5178502 Query 148475 CAGAATGCCGCGGCTAGCGGGGCTGCCCTCGTACGAGCTGTACGGTCCGTGCGCCGCCGC 148534 || ||||| ||| | ||| ||| ||||| | ||| || ||| || | || || Sbjct 5178503 AAGGATGCCCTTGCTGACCGGGGAGCCTTCGTAGGTTTCGTATGGCCCGAGCTCGGCAGC 5178562 Query 148535 CAGTTCGCAGCTCGCCTCGAGCGCGCCGTAGTAAATCGTCTCGGCAATTTGCCTGTTGAG 148594 ||| ||||||||||||||||| || ||||||| || |||||| || || |||| || Sbjct 5178563 CAGCTCGCAGCTCGCCTCGAGGGCTGCGTAGTAGATGGTCTCGAAGATCTGGGTGTTCAG 5178622 Query 148595 CAGCGCCGCCGACTCGCTTTCGTACGGCATACGCAGCCGCACAAACGCGTCGGCAAGGCC 148654 ||| || ||||||| |||| ||||| | | || |||||||| | || Sbjct 5178623 AAGCTGAGCTTCGGGGCTTTCGAACGGGTAACGCATGAGGATGAATGCGTCGGCCAAACC 5178682 Query 148655 CTGTACGCCCACGCCAATGGGCCGGTGTTTAATGTTGGAGAGGCGCGCGCTCTCGAGC-- 148712 ||| || || | || || |||| ||| ||||||| | | ||| ||| || Sbjct 5178683 CTGGACACCGATTCCTATTGGCCTGTGGCGCTTGTTGGA-CTTCTC-AGCT-TCGGGCAC 5178739 Query 148713 -GGATAGTGGTTGCGGTCGATGATCTTG-TCAAGATTGCGCACCACCACCTTTGTAATTC 148770 ||||||| || || ||||||||| ||||| || | || || ||||| || | | Sbjct 5178740 TGGATAGTAATTAATATCTATGATCTTGTTCAAGTTTTTG-ACAACTACCTTGGTCA--C 5178796 Query 148771 TGC-GC-AGCAATTCAAAATCGTA---CTTGTCATCTACGATGCATCGGTTCACGGCGAT 148825 || || || || ||| || | | ||| | || | | ||| | |||| Sbjct 5178797 AGCAGCTAGTTTTTGAAAGTCAAAAGTCCGCTCAGCGGTGACGTACATGTTGAGTGCGAC 5178856 Query 148826 AGAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGATCTCGGCGCA 148885 ||||| ||||| || || || ||| || | | |||| || || || || | ||| Sbjct 5178857 GGAGGCCAGATTACAAACCGCTACCTCGTCGCTGCTGGTGTATTCCACAATTTCTGTGCA 5178916 Query 148886 CAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCACGCGTC 148945 |||||||||| ||||| ||||| |||| || |||||||| || ||||| || || Sbjct 5178917 TAGATTGCTGCTCTTGATGGTGCCCAGATTCTGCTGGTTGCTCTTCCTATTGCAGGCATC 5178976 Query 148946 CTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTCCACTATGAACCGATGC-- 149003 ||||| |||||||| || ||| ||||| ||| | | |||||| |||| Sbjct 5178977 TTTGTAGAGCATGTATGGAGTGCCGGTTTCAGTCTGGG---ACTCTATGATGGCATGCCA 5179033 Query 149004 -AGGTCCTGCGCGCGCACTTGCTGCTCGTAGCGACCCTCCTGCTCGTATAAAGTATACAG 149062 | | ||| || ||| ||| | ||| || || | ||||||| || || || Sbjct 5179034 AACCTGCTGGGCCTTCACCACACGCTTGACGCGGCCTTCTTTCTCGTATTTGGTGTAGAG 5179093 Query 149063 CCGCTCGAACGCCTCGCCGTAGCAATCGTCGAGACCGGGGCACTTGTGCGGGCACATGAG 149122 | ||| ||| |||| || |||| || | || ||||| || | || || ||||| || Sbjct 5179094 CTTCTCAAACTCCTCCCCCCAGCACTCATTCAGCCCGGGACATTCGTCTGGACACATTAG 5179153 Query 149123 CGACCACACGCCGTCCGCGTACACGCGCTTCATAAACAGATCGGGCACCCAGAGCGCGTA 149182 ||||| | || | ||| | |||||| |||| || || | ||| | |||| Sbjct 5179154 AGACCAGTCCTGGTTACTCTCCACCCTCTTCATGAACAAGTCAGGGATCCACATACCGTA 5179213 Query 149183 CATGAGGTCGC--GCGCCTTGCAGTCTTCGGCGCCCATGTTGCGGCGCAGGTTGAGCACG 149240 | ||||| | || | ||| || || || |||| || | || | | Sbjct 5179214 GAAAAGGTCTCTGGCTCTCTGC--TCCTCTTTTCCAGTGTTCTTCTTCAACTCCAGGAAG 5179271 Query 149241 CTGAATATGTCCGCGTGCCACGGCTCAATGTACACCGCGAGCGCGCCCTTGCGCTTG--- 149297 ||||| || | ||||| || || | ||||| |||| || || | |||| Sbjct 5179272 TCAAATATATCGGAATGCCAGGGTTCCAGGTACATGGCGAAAGCCCCAGGCCTCTTGTTT 5179331 Query 149298 CCGCCCTGGTCGACGTGGCGCACCATGTTGTTAAACACTCGAACCATAGGTTCAATGCCA 149357 || |||||||| || | ||| | ||||||| | |||| | ||| || ||| ||| Sbjct 5179332 CCACCCTGGTCCACATAGCGTGCGGTGTTGTTGTAAACTCTCAGCATGGGGACAAGCCCA 5179391 Query 149358 CTGGCAGTGCCGTTAGT-AGAGCTAATGCGACTGCCGCGCGCTCGCACTTTGTGCACGTT 149416 ||| |||| || || ||| ||| ||| || | || | | ||| Sbjct 5179392 TTGGAGTTGCCATTGGTGCCAGC-GATGTAACTTCCCGTAGATCTGATGCAGCTGACGGC 5179450 Query 149417 GACGCCGATGCCGCC-GCCGTACTTTGAGATGGCCGCGCAGTCGCCGAGCGTCGAGTAGA 149475 || ||||| || || |||| |||| |||||| |||||| | ||||| || | Sbjct 5179451 CACACCGATTCCTCCAGCCG-ACTTGGAGATGAGCGCGCACTGTTTCAGCGTGTCATAAA 5179509 Query 149476 TGCCCTCGATGCTGTCGCGCTTCATGGTCAGCAGAAAGCA 149515 |||||||||||||||| |||||||| ||||| ||||| Sbjct 5179510 TGCCCTCGATGCTGTCATCCTTCATGGCGAGCAGGAAGCA 5179549 >seq15 Length=11516971 Score = 138 bits (152), Expect = 1e-27 Identities = 152/200 (76%), Gaps = 2/200 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||| ||||| || ||||| ||| | ||| | | | || || |||||||||| Sbjct 2476775 GGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCA-TCTTCCAGCTGCTTGC 2476833 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | || |||| |||||| || || || |||||||||||||| |||||| || Sbjct 2476834 CAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCT 2476893 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | ||||| |||||| |||||||||| || | |||| ||| ||||| ||||| | Sbjct 2476894 TCACGTTCTCAATGGTGTCGCTGGGCTCCACCTCAAGAGTGATGGTCTTGCCAGTCAGGG 2476953 Query 133642 TTTTTACGAAAATCTGCATG 133661 ||||||| || ||||||||| Sbjct 2476954 TTTTTACAAAGATCTGCATG 2476973 Score = 138 bits (152), Expect = 1e-27 Identities = 152/200 (76%), Gaps = 2/200 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||| ||||| || ||||| ||| | ||| | | | || || |||||||||| Sbjct 2477003 GGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCA-TCTTCCAGCTGCTTGC 2477061 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | || |||| |||||| || || || |||||||||||||| |||||| || Sbjct 2477062 CAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCT 2477121 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | ||||| |||||| |||||||||| || | |||| ||| ||||| ||||| | Sbjct 2477122 TCACGTTCTCAATGGTGTCGCTGGGCTCCACCTCAAGAGTGATGGTCTTGCCAGTCAGGG 2477181 Query 133642 TTTTTACGAAAATCTGCATG 133661 ||||||| || ||||||||| Sbjct 2477182 TTTTTACAAAGATCTGCATG 2477201 Score = 138 bits (152), Expect = 1e-27 Identities = 152/200 (76%), Gaps = 2/200 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||| ||||| || ||||| ||| | ||| | | | || || |||||||||| Sbjct 2477231 GGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCA-TCTTCCAGCTGCTTGC 2477289 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | || |||| |||||| || || || |||||||||||||| |||||| || Sbjct 2477290 CAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCT 2477349 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | ||||| |||||| |||||||||| || | |||| ||| ||||| ||||| | Sbjct 2477350 TCACGTTCTCAATGGTGTCGCTGGGCTCCACCTCAAGAGTGATGGTCTTGCCAGTCAGGG 2477409 Query 133642 TTTTTACGAAAATCTGCATG 133661 ||||||| || ||||||||| Sbjct 2477410 TTTTTACAAAGATCTGCATG 2477429 Score = 132 bits (146), Expect = 5e-26 Identities = 151/200 (76%), Gaps = 2/200 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||| ||||| || ||||| ||| | ||| | | | || || |||||||||| Sbjct 2477459 GGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCA-TCTTCCAGCTGCTTGC 2477517 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | || |||| |||||| || || || |||||||||||||| |||||| || Sbjct 2477518 CAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCT 2477577 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | ||||| ||||| |||||||||| || | |||| ||| ||||| ||||| | Sbjct 2477578 TCACATTCTCAATGGTGTCACTGGGCTCCACCTCAAGAGTGATGGTCTTGCCAGTCAGGG 2477637 Query 133642 TTTTTACGAAAATCTGCATG 133661 ||||||| || ||||||||| Sbjct 2477638 TTTTTACAAAGATCTGCATG 2477657 Score = 122 bits (134), Expect = 8e-23 Identities = 94/112 (84%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 148864 TGTACTCTACGATCTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGAT 148923 |||||||||| ||||| | ||||||||||||| ||||||| ||||| ||||| || | Sbjct 9312830 TGTACTCTACAATCTCTGTGCACAGATTGCTGGATTTGATGGTGCCCAGGTTCTGCTGGT 9312889 Query 148924 TGCTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTC 148975 ||||||| |||||||| ||||||||||| |||||||| ||| ||| ||||| Sbjct 9312890 TGCTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTATGGTGTGCCGGTTTC 9312941 >seq6 Length=9412079 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 |||| |||| ||||| || ||||| || | ||| ||||| ||||||||||| Sbjct 6657383 GGTGAACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGTGGCCGTCCTGCAGCTGCTTGCC 6657324 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | ||||| |||||||| || |||||||| || ||||| || |||||| ||| Sbjct 6657323 AGCAAAGATGAGACGCTGCTGATCAGGAGGGATCCCCTCCTTATCATGGATCTTGACCTT 6657264 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | | ||| |||| |||| ||||| | | ||| ||| ||| | ||||| || Sbjct 6657263 GATATTCACAATGCTGTCATTGGGTTCCACATTCAGACTGATGGTCTTGTCAGTCAGGGT 6657204 Query 133643 TTTTACGAAAATCTGCAT 133660 || || || |||||||| Sbjct 6657203 CTTCACAAATATCTGCAT 6657186 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483379497735400