Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Takifugu_20rubripes_20[refseq_20GCF_5F000180615.1_202011-10-13] 6,835 sequences; 391,484,715 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq11 556 2e-153 seq12 98.7 1e-15 seq15 93.3 6e-14 >seq11 Length=11238946 Score = 556 bits (616), Expect = 2e-153 Identities = 1302/1953 (67%), Gaps = 21/1953 (1%) Strand=Plus/Plus Query 68651 TATTCTTGATCTCATCATTCCACAATTTTCTCTCCGTTAAAACTCTAAGGAGATGCGGAT 68710 |||| || || || || |||||||| |||||||| | || | ||||| || || | Sbjct 5178229 TATTTTTCATGTCCTCGTTCCACAACCCCCTCTCCGTCAGGTCTTTGAGGAGGTGAGGGT 5178288 Query 68711 TAACTATTTGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTT 68770 | || || || || ||||| || | || || || ||||| || || ||||| || | || Sbjct 5178289 TGACAATCTGGAACTCCCCGGACAGGACCCTGCGGGTGTAGATGTTGCTGGTGTAGGCTT 5178348 Query 68771 CCACAGATTCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCA 68830 | | ||| || || || ||||| || || || ||||| || || ||||| || || | | Sbjct 5178349 CGATAGACTCGTTGTTGCCCAGGATCTGGGCGGTTGAGGCGGTGGGCATCGGGGCTAAGA 5178408 Query 68831 ATAAACTATTTCTAAGACCATGTGTTATGATTTTATCTTTTAGATGTTTCCAATCCCAAA 68890 | ||| || || | || || | |||||| || ||||| | ||||| ||| | | Sbjct 5178409 GCAGACTGTTCCTCACGCCGTGCTTGGCGATTTTTTCCTTTAGCAGCTTCCAGTCCAACA 5178468 Query 68891 GATCAGATGGTACAACATTCCAAAGATCGTATTGTAGAATTCCGTTACTTGCATATGATC 68950 | || | || | ||| | ||||| || || || || || || | || | Sbjct 5178469 GGTCGGTGGGCGTCTTCTCCCACATGTCGTACTGAAGGATGCCCTTGCTGACCGGGGAGC 5178528 Query 68951 CATTATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAATGCAC 69010 | | || ||||| || || || || |||| || || || || ||||| | || Sbjct 5178529 CTTCGTAGGTTTCGTATGGCCCGAGCTCGGCAGCCAGCTCGCAGCTCGCCTCGAGGGCTG 5178588 Query 69011 CGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCGAATG 69070 |||| || || || ||||| |||| | || ||| || ||||| | || ||||| | Sbjct 5178589 CGTAGTAGATGGTCTCGAAGATCTGGGTGTTCAGAAGCTGAGCTTCGGGGCTTTCGAACG 5178648 Query 69071 GATAATGTAAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTAT 69130 | ||| | | || || ||||| || ||||| ||||| || || || || || || || | Sbjct 5178649 GGTAACGCATGAGGATGAATGCGTCGGCCAAACCCTGGACACCGATTCCTATTGGCCTGT 5178708 Query 69131 GTCTCTTATTTGAACTTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTAT 69190 | | ||| || || | |||||||| || | ||||| |||||||||||||| || || | Sbjct 5178709 GGCGCTTGTTGGACTTCTCAGCTTCGGGCACTGGATAGTAATTAATATCTATGATCTTGT 5178768 Query 69191 TAAGATTTCGGACTACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAAT---CGTC 69247 | | ||| ||| ||||| || ||| | |||||| |||| ||||| || Sbjct 5178769 TCAAGTTTTTGACAACTACCTTGGTCACAGCAGCTAGTTTTTGAAAGTCAAAAGTCCGCT 5178828 Query 69248 CATCTATAACAAACATATTCAGTGCTACAGATGCTAGATTACAAACTGCTACCTCATTAG 69307 || | | || |||| || ||||| || || || ||||||||||| |||||||| | Sbjct 5178829 CAGCGGTGACGTACATGTTGAGTGCGACGGAGGCCAGATTACAAACCGCTACCTCGTCGC 5178888 Query 69308 AATTTGCATATTGTATTATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTT 69367 | | |||| | || ||||| |||||||| || | ||||| || |||||||| | Sbjct 5178889 TGCTGGTGTATTCCACAATTTCTGTGCATAGATTGCTGCTCTTGATGGTGCCCAGATTCT 5178948 Query 69368 GCTGATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAA 69427 |||| || ||||| | || ||||| || ||||| || || | ||||| || |||||| Sbjct 5178949 GCTGGTTGCTCTTCCTATTGCAGGCATCTTTGTAGAGCATGTATGGAGTGCCGGTTTCAG 5179008 Query 69428 TCTGAGATTCGATAATAGATTTCCAAACGACCCTAGCATTTATTACGGTCTTGTAACGCT 69487 |||| || || || || | | |||||| | || || | || |||| |||| Sbjct 5179009 TCTGGGACTCTATGATGGCATGCCAAACCTGCTGGGCCTTCACCACACGCTTG--ACGCG 5179066 Query 69488 TC--TCTTTTTCATATTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAA 69545 | ||||| || |||| || || ||| || || || || ||||| |||| || Sbjct 5179067 GCCTTCTTTCTCGTATTTGGTGTAGAGCTTCTCAAACTCCTCCCCCCAGCACTCATTCAG 5179126 Query 69546 TCCAGGACATTCATTTGGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCAT 69605 || |||||||| | ||||||||| | ||||| | | | | || || | ||||| Sbjct 5179127 CCCGGGACATTCGTCTGGACACATTAGAGACCAGTCCTGGTTACTCTCCACCCTCTTCAT 5179186 Query 69606 AAATAGATCGGGAATCCAAAGAGC-TATAAAGAGATCTCTGGTTCTATTTTCTTCATTTC 69664 || | || || ||||| | | | || ||| || ||||||| ||| | || || |||| Sbjct 5179187 GAACAAGTCAGGGATCCACATACCGTAGAAA-AGGTCTCTGGCTCTCTGCTCCTCTTTTC 5179245 Query 69665 CTGTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATA 69724 | || || || || | || || || || | ||||| |||||||| ||||| || || | Sbjct 5179246 CAGTGTTCTTCTTCAACTCCAGGAAGTCAAATATATCGGAATGCCAGGGTTCCAGGTACA 5179305 Query 69725 TCGCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTAT 69784 | || | | || || | || ||||| ||||| || | || | || ||||| || | Sbjct 5179306 TGGCGAAAGCCCCAGGCCTCTTGTTTCCACCCTGGTCCACATAGCGTGCGGTGTTGTTGT 5179365 Query 69785 AGACTCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTC 69844 | ||||||||||| || | || ||||| || || ||||| || |||| || ||||||| Sbjct 5179366 AAACTCTCAGCATGGGGACAAGCCCATTGGAGTTGCCATTGGTGCCAGCGATGTAACTTC 5179425 Query 69845 CTCTTGCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAG 69904 | | | | || || | | | ||| |||||||| ||| || ||||| || | Sbjct 5179426 CCGTAGATCTGATGCAGCTGACGGCCACACCGATTCCTCCAGCCGACTTGGAGATGAGCG 5179485 Query 69905 CACAACGTTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAA 69964 | || |||||| |||||||| || ||||| ||||| ||||| ||||| || || | Sbjct 5179486 CGCACTGTTTCAGCGTGTCATAAATGCCCTCGATGCTGTCATCCTTCATGGCGAGCAGGA 5179545 Query 69965 AACAGCTAGACATTTGATGA-TGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGA 70023 | ||||| |||| || | ||| | || || |||||||| | ||| || || || || Sbjct 5179546 AGCAGCTGGACAGCTGTGGCCTGT-TGGTACCTGCATTAAAGAGTGTCGGGGAGGCATGG 5179604 Query 70024 GTGAACCATTTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATATCCCACTGA 70083 |||||||| || || || ||||| ||||| |||||||| |||| || ||||| ||| Sbjct 5179605 GTGAACCACTTCTCTGACAGCAGGTTGTAGGTTTCAATCGCTGCATCAATATCTGTTTGA 5179664 Query 70084 TGAATTCCTATCGCGACACGCATCAACATATGCTGAGGTCGTTCTACCGTTTTATTATTT 70143 || || || | | || | ||| | ||| ||||| ||||| || || ||| || Sbjct 5179665 TGGATCCCCACAGAAACCCTCATGAGCATGTGCTGCGGTCGCTCGGCCACTTTGCCGTTG 5179724 Query 70144 ATTTTCAACAGGTATGATTTTTCCAGAGTTTTAAACCCAAAATAGTTGTATGAAAAGTCT 70203 || ||||||||||| || ||||| |||||||| || || | ||||||||||| || Sbjct 5179725 ATCTTCAACAGGTAGGACCGCTCCAGGGTTTTAAAGCCGAAGAAATTGTATGAAAAATCA 5179784 Query 70204 CTTTCGTAAATAATAACAGAATTTAGTTTATCCTTATATTTGGTAACTATATCCATAACA 70263 | || || || || | || || || || || | | | || || || || Sbjct 5179785 CGGTCATATATTATGGCCGAGTTCAGGCGGTCTTTGTTCTGGAGGACGATGTC---AAGC 5179841 Query 70264 GT---AGGTGAGATAATCGGAGATCGTTTACCATTTTTA--GGATTAACATAGTTGAATA 70318 || |||| || ||||| || | | |||| || || | |||||| | | Sbjct 5179842 GTCTCCTTGGAGACCATGGGAGA--GTGACGCTTATTTAGTGGGTTTATGTAGTTGTACA 5179899 Query 70319 AATCTTCCATTACATCACTAAATAGtttttttGTTTCCTTGTGTAAATTTGATATGGCTA 70378 || ||||| || ||||| || | || ||||| |||||||| | ||||| | ||| | Sbjct 5179900 GGTCCTCCATCACGTCACTGAACACCTTCTTTGTCTCCTTGTGCAGGTTTGAGACGGCGA 5179959 Query 70379 TTCTGGCTGCTAGAATAGCATAGTCAGGATGTTGTGTAGTACAAGTAGCTGCTATTTCCG 70438 | | || || || || || |||||||| |||| || || |||||| | || || | Sbjct 5179960 TCCGTGCAGCGAGGATGGCGTAGTCAGGGTGTTTGGTGGTCAGAGTAGCAGAGATCTCTG 5180019 Query 70439 CAGCTAACGTATCTAATTCTATAGTTGTAACTCCGTTATATAGCCCTTGAATAACTTTCA 70498 | || || || || | || | || || ||||| || || | || || || || |||| Sbjct 5180020 CTGCCAAGGTGTCGAGCTCCACCGTGGTGACTCCATTGTACAAACCCTGGATCACCTTCA 5180079 Query 70499 TGGCTATTTTGATAGGATCTATGAATTCTGTGTTCAGACCATAACATAATTTTCTAATAC 70558 ||| || | | || || | || || | ||| || || || || | || || | Sbjct 5180080 TGGTAATCTGGGCTGGGTCCACAAAGTCAGCGTTTAGGCCGTAGCACAGCTTCTGGATGC 5180139 Query 70559 GAGATGTAATTTTATCAAACATAACATTCTCCT 70591 |||| || |||||||| ||||| || ||||| Sbjct 5180140 GAGAGGTGATTTTATCGAACATGACGCGCTCCT 5180172 >seq12 Length=10661439 Score = 98.7 bits (108), Expect = 1e-15 Identities = 99/129 (77%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 |||||||||| || || | || |||||| | ||||| || ||||| || || | || | Sbjct 1964275 CCTCATCTCTGCTGATGAGCTCATTAGAATAGGTGAGGCCCGGCATGAGTCCCCTTTTCT 1964216 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 | ||||| | |||| || || || ||||| ||||||||||| || ||||||||||||| Sbjct 1964215 TCAGCCAGTAGATGGACGCGAACGAGCCAGAGAAGAAGATGCCCTCCACTGCTGCAAATG 1964156 Query 39759 CAACAAGTC 39767 | || |||| Sbjct 1964155 CCACCAGTC 1964147 >seq15 Length=11516971 Score = 93.3 bits (102), Expect = 6e-14 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 69325 ATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTG 69384 |||||||| || ||||| || ||||||| || ||||| || ||||| || ||||| || Sbjct 9312841 ATCTCTGTGCACAGATTGCTGGATTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCTG 9312900 Query 69385 TTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAAT 69443 || |||||||||||||| || || | || || || ||||| | ||||| ||||| || Sbjct 9312901 TTGCAGGCGTCCTTGTAGAGCATGTATGGTGTGCCGGTTTCTGTTTGAGACTCGATGAT 9312959 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686850112229400