Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Takifugu_20rubripes_20[refseq_20GCF_5F000180615.1_202011-10-13] 6,835 sequences; 391,484,715 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq11 205 1e-47 seq15 89.7 6e-13 seq1226 84.2 3e-11 >seq11 Length=11238946 Score = 205 bits (226), Expect = 1e-47 Identities = 833/1301 (64%), Gaps = 34/1301 (3%) Strand=Plus/Plus Query 118182 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 118241 ||||| ||| | ||||| | || | |||| ||||| |||| ||| ||||| || ||| Sbjct 5178327 TAGATGTTGCTGGTGTAGGCTTCGATAGACTCGTTGTTGCCCAGGATCTGGGCGGTTGAG 5178386 Query 118242 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCC 118301 || |||||||| || || | ||| || ||||| | | || | | || |||| Sbjct 5178387 GCGGTGGGCATCGGGGCTAAGAGCAGACTGTTCCTCACGCCGTGCTTGGCGATTTTTTCC 5178446 Query 118302 TTGAG-AGCGTCCCAGTC------GTAGTTGAGCTTTGTCTCCCCCTGCCACATATCAAA 118354 || || ||| ||| |||| || | || || | |||||| |||| || | Sbjct 5178447 TTTAGCAGCTTCC-AGTCCAACAGGTCGGTGGGCGTCTTCTCCC------ACATGTCGTA 5178499 Query 118355 CTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTC 118414 ||| ||||| || | | | || || || || | || || ||||| || | | Sbjct 5178500 CTGAAGGATGCCCTTGCTGACCGGGGAGCCTTCGTAGGTTTCGTATGGCCCGAGCTCGGC 5178559 Query 118415 CGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCATT 118474 |||| ||| ||||||||||||||||||||| || || || || || || | | || Sbjct 5178560 AGCCAGCTCGCAGCTCGCCTCGAGGGCTGCGTAGTAGATGGTCTCGAAGATCTGGGTGTT 5178619 Query 118475 CATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAG 118534 || || || ||| | || |||| | || | || ||| | || || | Sbjct 5178620 CAGAAGCTGAGCTTCGGGGCTTTCGAACGGGTAACGCATGAGGATGAATGCGTCGGCCAA 5178679 Query 118535 ACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTCCGAGCGGTCTCCAC 118594 ||| |||||||||| || ||||| | || | | | || |||||| ||| ||| Sbjct 5178680 ACCCTGGACACCGATTCCTATTGGCCTGTGGCGCTTGTTGGACTTCTCAGCTTCGGGCAC 5178739 Query 118595 GGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTC 118654 ||||| |||| |||| || | | | || | |||||| || ||||| || | | Sbjct 5178740 TGGATAGTAATTAATATCTATGATCTTGTTCAAGTTTTTGACAACTACCTTGGTCACAGC 5178799 Query 118655 ATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGAT 118714 | || |||| | |||||| | || ||| | |||| ||| | || |||| Sbjct 5178800 AGCTAGTTTTTGAAAGTCAAAAGTCCG---CTCAGCGGTGACGTACATGTTGAGTGCGAC 5178856 Query 118715 TGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTGCA 118774 || ||||||||||| || | ||| || | ||||| || | |||||| ||||| Sbjct 5178857 GGAGGCCAGATTACAAACCGCTACCTCGTCGCTGCTGGTGTATTCCACAATTTCTGTGCA 5178916 Query 118775 CAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATC 118834 | || ||||| |||||||||| |||| || || ||| | || || ||||| Sbjct 5178917 TAGATTGCTGCTCTTGATGGTGCCCAGATTCTGCTGGTTGCTCTTCCTATTGCAGGCATC 5178976 Query 118835 CTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGAC 118894 ||||| ||||||||||| || || || || || ||||||| | || || | ||| || Sbjct 5178977 TTTGTAGAGCATGTATGGAGTGCCGGTTTCAGTCTGGGACTCTATGATGGCATGCCAAAC 5179036 Query 118895 AT-CGGCAGCTGGCACAGTGGCGTTGGCTCGCCCCTCTTCCTCGTACTTTGTGTAGAGGG 118953 | | | || || || ||| | || || |||| |||||| || |||||||| Sbjct 5179037 CTGCTGGGCCTTCACCACACGC-TTGACGCGGCCTTCTTTCTCGTATTTGGTGTAGAGCT 5179095 Query 118954 CTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAG 119013 |||||||| || ||| | ||| ||||| || | ||||| || | |||| Sbjct 5179096 TCTCAAACTCCTCCCCCCAGCACTCATTCAGCCCGGGACATTCGTCTGGACACATTAGAG 5179155 Query 119014 ACCA---TTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCG 119070 |||| || || |||| |||| ||||||||| | ||| |||||||| | | Sbjct 5179156 ACCAGTCCTGGTTACTCTCC---ACCCTCTTCATGAACAAGTCAGGGATCCACATACCGT 5179212 Query 119071 AGAAGAGATC-CCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAG 119129 |||| || || | | | ||| || | || || || |||||||| ||| Sbjct 5179213 AGAAAAGGTCTCTGGCTCTCTGCTCCTCTTTTCCAGTG-TTCTTCTTCAACTCCAGGAAG 5179271 Query 119130 TCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCC---CTTACGACGA 119186 || | ||||| | ||||| ||||||||||||| |||| | ||| | | Sbjct 5179272 TCAAATATATCGGAATGCCAGGGTTCCAGGTACATGGCGAAAGCCCCAGGCCTCTTGTTT 5179331 Query 119187 CCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATGATACCA 119246 ||| |||||| ||||| | || ||| ||| | || | ||||| || | | ||| Sbjct 5179332 CCACCCTGGTCCACATAGCGTGCGGTGTTGTTGTAAACTCTCAGCATGGGGACAAGCCCA 5179391 Query 119247 TCGGATTGGCCATTTGTCCCCCGAATACGAGACTT--ATTGGCTCTGACATCGTGGATGT 119304 | ||| | |||||| || || || | |||| | | ||||| | || | Sbjct 5179392 TTGGAGTTGCCATTGGTGCCAGCGAT--GTAACTTCCCGTAGATCTGATGCAGCTGACGG 5179449 Query 119305 GCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGA 119364 || ||| || || || ||| |||| ||||| ||||||||| | || || | || | Sbjct 5179450 CCACACCGATTCCTCCAGCCGACTTGGAGATGAGCGCGCACTGTTTCAGCGTGTCATAAA 5179509 Query 119365 TCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCCTGG 119424 | || ||||| |||| |||| | |||| ||||||||||| |||| || |||||| Sbjct 5179510 TGCCCTCGATGCTGTCATCCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGTGGCCTGT 5179569 Query 119425 GTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAAC 119465 ||||| || || ||||| || || | || ||| ||||| Sbjct 5179570 TGGTACCTGCATTAAAGAGTGTCGGGGAGGCATGGGTGAAC 5179610 >seq15 Length=11516971 Score = 89.7 bits (98), Expect = 6e-13 Identities = 75/92 (82%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 118182 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 118241 ||||| ||| | ||||| | ||| | | |||| ||||| |||| ||| ||||| |||||| Sbjct 9311918 TAGATGTTGCTGGTGTAGGCCTCGATGGACTCGTTGTTCCCCAGGATCTGGGCGGTGGAG 9311977 Query 118242 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTT 118273 |||||||||||||| |||| || |||||||| Sbjct 9311978 GCTGTGGGCATGGGAGCCAGCAGCAGGCTGTT 9312009 Score = 86.0 bits (94), Expect = 8e-12 Identities = 113/155 (73%), Gaps = 4/155 (3%) Strand=Plus/Plus Query 118739 CTCATCCTTATCAGTGTACTCTATAATTTCCGTGCACAAGTT--TGAACTCTTAATGGTG 118796 |||||| || |||||||||| ||| || ||||||| || || | | | |||||| Sbjct 9312816 CTCATCTTTGCTCGTGTACTCTACAATCTCTGTGCACAGATTGCTGGATT--TGATGGTG 9312873 Query 118797 CCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTC 118856 |||| ||||| || || ||| |||| || || |||||||| ||||||||||| || Sbjct 9312874 CCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTATGGTGTG 9312933 Query 118857 CCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCA 118891 || || || ||||| |||| || || || | ||| Sbjct 9312934 CCGGTTTCTGTTTGAGACTCGATGATGGCGTACCA 9312968 >seq1226 Length=411779 Score = 84.2 bits (92), Expect = 3e-11 Identities = 84/109 (77%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 130035 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCT 130094 ||||||| | | |||||| || || |||||| ||| || ||||| || |||| |||| Sbjct 204644 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATCAGGCCCCTTTTCT 204585 Query 130095 TCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCAC 130143 ||| |||||| || | | ||| || ||||||||||| || |||||||| Sbjct 204584 TCAGCCAGAAGATGGAAGCAAAGGACCCAGAGAAGAAAATACCCTCCAC 204536 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618382362442600