Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Takifugu_20rubripes_20[refseq_20GCF_5F000180615.1_202011-10-13] 6,835 sequences; 391,484,715 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq11 248 1e-60 seq15 96.9 4e-15 seq1226 87.8 2e-12 >seq11 Length=11238946 Score = 248 bits (274), Expect = 1e-60 Identities = 863/1335 (65%), Gaps = 45/1335 (3%) Strand=Plus/Plus Query 78507 GAACTCGCCGGCCAGGGTCCGGCGCAGGTAGATGTTGGTCGTGTACGGCTCGAAAGCCTC 78566 |||||| |||| |||| || ||| |||||||||| | ||||| | |||| || ||| Sbjct 5178299 GAACTCCCCGGACAGGACCCTGCGGGTGTAGATGTTGCTGGTGTAGGCTTCGATAGACTC 5178358 Query 78567 GTTGTTCCCCATGATCTGGGCGGTCGAGGCGGTCGGCATGGGTGCGACCAGTAGAGAATT 78626 |||||| |||| |||||||||||| |||||||| ||||| || || | || ||| || Sbjct 5178359 GTTGTTGCCCAGGATCTGGGCGGTTGAGGCGGTGGGCATCGGGGCTAAGAGCAGACTGTT 5178418 Query 78627 CCGAAGACCATGCGTCTTGATCTCGACCTTTAGG------CCGTCCCAAAATTCATTCGC 78680 || | || ||| | ||| | ||||||| | |||| | | || | | Sbjct 5178419 CCTCACGCCGTGCTTGGCGATTTTTTCCTTTAGCAGCTTCCAGTCCAACAGGTCGGTGGG 5178478 Query 78681 CGCGATCCCCCACATGTCCGGTTGAAGGATACCCTCGGACGCCGGCGACCCCTTGAACGT 78740 || || |||||||||| |||||||| |||| | |||| || || | | | || Sbjct 5178479 CGTCTTCTCCCACATGTCGTACTGAAGGATGCCCTTGCTGACCGGGGAGCCTTCGTAGGT 5178538 Query 78741 CTCGTAAGATCCCTCCTCCTTGGCGAGTTCGCAT---GACTCGAGCAGGGCCGCGTGGTA 78797 ||||| | || ||| || || ||||| | |||||| ||| |||| ||| Sbjct 5178539 TTCGTATGGCCCGAGCTCGGCAGCCAGCTCGCAGCTCGCCTCGAG---GGCTGCGTAGTA 5178595 Query 78798 CACAGCCTCGAAGATGCCCTTGTTGAGCTCGCGCGCCTTGGTCTCGTCGAACGA--AAGG 78855 | | ||||||||| |||| || | || | || ||||||| || | Sbjct 5178596 GATGGTCTCGAAGATCTGGGTGTTCAGAAGCTGAGCTTCGGGGCTTTCGAACGGGTAACG 5178655 Query 78856 CCGAGCATCATGAAGACATCGGCCAGGCCCTGGACGCCGATAGCGATCGGTCGGTGGCGC 78915 | | | ||||| | ||||||| |||||||| ||||| | || || | ||||||| Sbjct 5178656 C--ATGAGGATGAATGCGTCGGCCAAACCCTGGACACCGATTCCTATTGGCCTGTGGCGC 5178713 Query 78916 ATGTTGCTCTTTCGGGCCGCCTCGGTC---GGGTAAAAGTTCCGATCGATGACGCGGTTC 78972 ||||| ||| | || |||| | || || | || ||| |||| |||| Sbjct 5178714 TTGTTGGACTTCT---CAGCTTCGGGCACTGGATAGTAATTAATATCTATGATCTTGTTC 5178770 Query 78973 AGGTTACGCGTGACGACCCGAGTCACCTCGTACAATTTGGCGAAATCAAAAT---GATTT 79029 | ||| || ||| ||||| | | ||| || |||||| | | Sbjct 5178771 AAGTTTTTGACAACTACCTTGGTCACAGCAGCTAGTTTTTGAAAGTCAAAAGTCCGCTCA 5178830 Query 79030 CCTTTGATGAAAGTCGGTAGGCACAGCGATGCCAGGTTGCACACGGCCGTCTCGTCCGGG 79089 | ||| | | | || | || ||||| || || || || |||||| | Sbjct 5178831 GCGGTGACGTACATGTTGAGTGCGACGGAGGCCAGATTACAAACCGCTACCTCGTCGCTG 5178890 Query 79090 CTAGAAACCTCGATGATTTCTGTGCACAAATTAGACGACTTGATGGTGCCGATGTTCTTC 79149 || | || | ||||||||||| | ||| |||||||||||| | |||| | Sbjct 5178891 CTGGTGTATTCCACAATTTCTGTGCATAGATTGCTGCTCTTGATGGTGCCCAGATTCTGC 5178950 Query 79150 TGGTTGCTCTTCTCGTTACAGGCGTCCTTGTAGCACATGTACGGCGTCCCGGTCTCAACC 79209 |||||||||||| || ||||| || |||||| |||||| || || ||||| ||| | Sbjct 5178951 TGGTTGCTCTTCCTATTGCAGGCATCTTTGTAGAGCATGTATGGAGTGCCGGTTTCAGTC 5179010 Query 79210 TG--ACTCTTGAGAACGCCGTCCCAGATGTCCCGGGCCCGGACAACCTTCTTGTACCGAC 79267 || ||||| | | | | | ||| | | | ||||| || || |||| || | Sbjct 5179011 TGGGACTCT--ATGATGGCATGCCAAACCTGCTGGGCCTTCACCACACGCTTGACGCGGC 5179068 Query 79268 CCTGTGCGACGTACGTCCGGTACAACTCGTTGAAAGCCTCCCCATAGACATCGGGCAGGC 79327 | | | |||| | ||| | || | || ||||||| || || ||| | Sbjct 5179069 CTTCTTTCTCGTATTTGGTGTAGAGCTTCTCAAACTCCTCCCCCCAGCACTCATTCAGCC 5179128 Query 79328 CCGGGCACTCGTGCGGGCACATCAGGTGCCAGTCCTCGTCCTTCTCAACCTTCTCCATGA 79387 | || || |||| || ||||| || |||||||| || |||| ||| ||| ||||| Sbjct 5179129 CGGGACATTCGTCTGGACACATTAGAGACCAGTCCTGGTTACTCTCCACCCTCTTCATGA 5179188 Query 79388 AGAGGTCCGGGATCCACAGGGCCGT-GAAGAGGTCGCGGCAACGCATCTCCTCGTCGCCC 79446 | | ||| |||||||||| |||| ||| ||||| | | | | |||||| | || Sbjct 5179189 ACAAGTCAGGGATCCACATA-CCGTAGAAAAGGTCTCTGGCTCTCTGCTCCTCTTTTCCA 5179247 Query 79447 TGGTTCAGACGCAGCTCGAGAAAGTCCATGATGTCGGCGTGCCACGGCTCCAGATAGATG 79506 |||| || ||| || ||||| | || |||| ||||| || ||||| || ||| Sbjct 5179248 GTGTTCTTCTTCAACTCCAGGAAGTCAAATATATCGGAATGCCAGGGTTCCAGGTACATG 5179307 Query 79507 GCGAACGAACCCTTGCGCTTGCCGCCGCCCTGGTTGACGTACCGGGCCGTGTTGTTGAAA 79566 ||||| | || | |||| || ||||||| || || || || ||||||||| || Sbjct 5179308 GCGAAAGCCCCAGGCCTCTTGTTTCCACCCTGGTCCACATAGCGTGCGGTGTTGTTGTAA 5179367 Query 79567 ACTCGGAGCATGGGCACGATGCCGTCGGCGACGCCGTTCGTCCCGTTGATTCGTGTACCG 79626 |||| |||||||| || | || | || | ||| || || || ||| ||| | Sbjct 5179368 ACTCTCAGCATGGGGACAAGCCCATTGGAGTTGCCATTGGTGCCAGCGAT----GTAACT 5179423 Query 79627 CTCGCCCGAATGTTCGA-GCAGTGGATT------CCGATGCCCCCGGACCACTTGGAGAT 79679 |||| | | || |||| || ||||| || || | | |||||||||| Sbjct 5179424 T---CCCGTAGATCTGATGCAGCTGACGGCCACACCGATTCCTCCAGCCGACTTGGAGAT 5179480 Query 79680 GTGCGCGCACTCCTTGAGCGTCTCGTAGATGCCCTCGATCGAGTCGTCCTTCATAGCGAC 79739 | ||||||||| || ||||| || || ||||||||||| ||| |||||||| |||| Sbjct 5179481 GAGCGCGCACTGTTTCAGCGTGTCATAAATGCCCTCGATGCTGTCATCCTTCATGGCGAG 5179540 Query 79740 CAGGAAGCAGCTCGACATCTGTGGGTTGTTCGTACCGGCGTTGAAGAGGGTCGGCGTCGC 79799 |||||||||||| |||| |||||| |||| ||||| || || ||||| ||||| | || Sbjct 5179541 CAGGAAGCAGCTGGACAGCTGTGGCCTGTTGGTACCTGCATTAAAGAGTGTCGGGGAGGC 5179600 Query 79800 GTGCGTGAAGAACTT 79814 || ||||| |||| Sbjct 5179601 ATGGGTGAACCACTT 5179615 Score = 178 bits (196), Expect = 1e-39 Identities = 848/1329 (64%), Gaps = 39/1329 (3%) Strand=Plus/Minus Query 19166 GAGACATACGACCTGATGAGCCAGAAGTTCTTCACGCACGCGACGCCGACCCTTTTCAAC 19225 || || ||| ||||| || |||||| ||||| || || | ||||| || || || Sbjct 5179639 GAAACCTACAACCTGCTGTCAGAGAAGTGGTTCACCCATGCCTCCCCGACACTCTTTAAT 5179580 Query 19226 GCCGGTACGAACAACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAGGATGACAGC 19285 || ||||| |||| || ||| |||| ||||| ||||| | || ||||||||||||||| Sbjct 5179579 GCAGGTACCAACAGGCCACAGCTGTCCAGCTGCTTCCTGCTCGCCATGAAGGATGACAGC 5179520 Query 19286 ATTGAGGGCATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGTCCGGGGGT 19345 || |||||||| || || ||||| || ||||||||| ||||||||||| | | || || Sbjct 5179519 ATCGAGGGCATTTATGACACGCTGAAACAGTGCGCGCTCATCTCCAAGTCGGCTGGAGGA 5179460 Query 19346 ATCGG------GATCCACTGC-TCGAATATCCGGTCGAGTGGTACACGAATCAATGGGAC 19398 ||||| || |||| || || | ||| || | ||| ||| ||| || Sbjct 5179459 ATCGGTGTGGCCGTCAGCTGCATCAGATCTACGG--GA-AGTTAC----ATCGCTGGCAC 5179407 Query 19399 GAACGGAGTAGCCGACGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAGGTA 19458 || || || | || | ||||| ||||| | || | ||||||||| || | || Sbjct 5179406 CAATGGCAACTCCAATGGGCTTGTCCCCATGCTGAGAGTTTACAACAACACCGCACGCTA 5179347 Query 19459 CGTCAACCAGGGGGGCGGCAA-ACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGC 19517 || ||||||| || ||| | || ||| | |||||||| ||||| || || |||| Sbjct 5179346 TGTGGACCAGGGTGGAAACAAGAGGCCTGGG-GCTTTCGCCATGTACCTGGAACCCTGGC 5179288 Query 19518 ACGCGGACGTCATGGATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGCGCT 19577 | | || | | || ||||| || || |||| || | |||||| | | Sbjct 5179287 ATTCCGATATATTTGACTTCCTGGAGTTGAAGAAGAACACTGGAAAAGAGGAGCAGAGAG 5179228 Query 19578 GTCGCGACCTCTTC-ACGGCCTTGTGGATTCCGGACCTATTCATGGAGAAGGTTGAGAAG 19636 | ||||| ||| |||| ||||||| || ||| | |||||| ||| ||| |||| Sbjct 5179227 CCAGAGACCTTTTCTACGG-TATGTGGATCCCTGACTTGTTCATGAAGAGGGTGGAGAGT 5179169 Query 19637 GACGAAGAATGGCACCTGATGTGCCCGCACGAATGCCCTGGCCTACCCGACGTCTACGGC 19696 || | || ||| || ||||| || ||||||| || || || || || || Sbjct 5179168 AACCAGGACTGGTCTCTAATGTGTCCAGACGAATGTCCCGGGCTGAATGAGTGCTGGGGG 5179109 Query 19697 GAGGCGTTCAATGAGTTGTACCGGACTTACGTAGCCCAGGGCCGGTTCAAGAAGGTGGTC 19756 |||| ||| | || | ||| | |||| | ||||| ||||| ||||| Sbjct 5179108 GAGGAGTTTGAGAAGCTCTACACCAAATACGAGAAAGAAGGCCGCGTCAAGCGTGTGGTG 5179049 Query 19757 CGGGCCCGGGACGTCTGGGACCGCGTCCTCAAAAGCCAGGTCGAGACCGGCACACCGTAC 19816 ||||| | | || ||| | | || | | |||| || |||||||| || ||| Sbjct 5179048 AAGGCCCAGCAGGTTTGGCATGCCATCATAGAGTCCCAGACTGAAACCGGCACTCCATAC 5178989 Query 19817 ATGTGCTACAAGGACGCCGCGAACGCCAAGTCAAATCAGAAGAACATCGGCGCGATCAAG 19876 ||| |||||| || ||| || ||| || ||| |||| | ||| | |||||| Sbjct 5178988 ATGCTCTACAAAGATGCCTGCAATAGGAAGAGCAACCAGCAGAATCTGGGCACCATCAAG 5178929 Query 19877 TCGTCCAACCTGTGTACTGAAATCATGGAGGTTTCCAAGCCG-GACGAGACTGCCGTGTG 19935 ||| || || || ||||| |||| | | ||| | |||||| || || || Sbjct 5178928 AGCAGCAATCTATGCACAGAAATTGTGGA-ATACACCAGCAGCGACGAGGTAGCGGTTTG 5178870 Query 19936 TAATCTGGCGTCCCTGTGCCTGCCGACTTTCGTCAAGGC---CTCCTCCTTCGACTTTGC 19992 ||||||||| ||| | || | | ||||| || | || |||||| Sbjct 5178869 TAATCTGGCCTCCGTCGCACTCAACATGTACGTCACCGCTGAGCGGACTTTTGACTTTCA 5178810 Query 19993 CAAATTGTACGAGGTGACCCGGGTCGTCACGCGTAATCTGAATCGCGTCATCGATCGGAA 20052 ||| | | |||||| ||| || || |||| |||| ||| || Sbjct 5178809 AAAACTAGCTGCTGTGACCAAGGTAGTTGTCAAAAACTTGAACAAGATCATAGATATTAA 5178750 Query 20053 CTTTTACCC---GACCGAGGCGGCGCGCAAGTCGAATATGCGCCACCGGCCGATCGCGAT 20109 | || || | |||| || | | ||||| || | ||||||| |||| || | || Sbjct 5178749 TTACTATCCAGTGCCCGAAGCTGAG---AAGTCCAACAAGCGCCACAGGCCAATAGGAAT 5178693 Query 20110 CGGCGTCCAGGGCCTGGCCGACGTTTTCATGATGCTCGGCCTCTCATTCGACGATCCCAA 20169 ||| |||||||| ||||||||| ||||| | | | | | ||||| ||| | Sbjct 5178692 CGGTGTCCAGGGTTTGGCCGACGCATTCATCCTCATGCGTTACCCGTTCGAAAGCCCCGA 5178633 Query 20170 GGCGCGCGAGCTCAACAAGGGCATCTTCGAGGCCGTGTACCACGCGGCCCTCCTGGAATC 20229 || | || |||| ||||||||| || | ||| |||| |||||| || Sbjct 5178632 AGCTCAGCTTCTGAACACCCAGATCTTCGAGACCATCTACTACGCAGCCCTCGAGGCGAG 5178573 Query 20230 GTGCGAACTCGCCAAAGAGGACGGCCCGTACGAGACGTTCAAGGGGTCGCCCGCGTC--C 20287 ||||| || || ||| ||| || ||||| || | | | || || |||| ||| | Sbjct 5178572 CTGCGAGCTGGCTGCCGAGCTCGGGCCATACGAAACCTACGAAGGCTC-CCCG-GTCAGC 5178515 Query 20288 GAGGGTATCCTCCAGCCGGACATGTGG-----GGCG-TCACTGAGAATGAGTTTTGGAGC 20341 |||| ||||| ||| ||||||||| | || ||| || | |||| Sbjct 5178514 AAGGGCATCCTTCAGTACGACATGTGGGAGAAGACGCCCACCGACCTGTTGGACTGGAAG 5178455 Query 20342 GCCCTCAAGGTTGAGATCAAGACCCACGGGCTTCGCAACTCGTTGCTCGTCGCGCCCATG 20401 || |||| | ||| | ||||| | | ||| ||||| | || || ||| Sbjct 5178454 CTGCTAAAGGAAAAAATCGCCAAGCACGGCGTGAGGAACAGTCTGCTCTTAGCCCCGATG 5178395 Query 20402 CCGACCGCCTCGACCGCCCAGATCATGGGGAACAACGAGGCTTTCGAGCCGTACACGACC 20461 || |||||||| |||||||||||| |||| ||||||||| || |||| | ||||| | | Sbjct 5178394 CCCACCGCCTCAACCGCCCAGATCCTGGGCAACAACGAGTCTATCGAAGCCTACACCAGC 5178335 Query 20462 AACATCTAC 20470 ||||||||| Sbjct 5178334 AACATCTAC 5178326 >seq15 Length=11516971 Score = 96.9 bits (106), Expect = 4e-15 Identities = 82/101 (81%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 79105 ATTTCTGTGCACAAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCG 79164 || |||||||||| ||| || ||||||||||| | ||||| ||||||||||||| | Sbjct 9312841 ATCTCTGTGCACAGATTGCTGGATTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCTG 9312900 Query 79165 TTACAGGCGTCCTTGTAGCACATGTACGGCGTCCCGGTCTC 79205 || ||||||||||||||| |||||| || || ||||| || Sbjct 9312901 TTGCAGGCGTCCTTGTAGAGCATGTATGGTGTGCCGGTTTC 9312941 Score = 93.3 bits (102), Expect = 5e-14 Identities = 129/177 (73%), Gaps = 4/177 (2%) Strand=Plus/Minus Query 20602 GGATATCCCCCAGAACCTCAAGGACATTTACAGGACCGTATGGGAAATCCCACAGAAGAG 20661 ||| |||||| | |||| ||| | | || | ||||| ||||||||| | ||||||| Sbjct 9311621 GGAGATCCCCGATGACCTGAAGCAGCTGTATAAAACCGTGTGGGAAATCTCCCAGAAGAC 9311562 Query 20662 CATCATCGACATGGCGGCCGATCGCGGCGCCTACATCGACCAGTCCCAGTCGCTCAATGT 20721 | || || | ||||| || ||||||||||| |||||||| ||| ||||||||| || | Sbjct 9311561 CGTCCTCAAGATGGCAGCAGATCGCGGCGCTTACATCGATCAGAGCCAGTCGCTGAACAT 9311502 Query 20722 CTTCATGGAGAATCCGAGCCT--GGCGAAGCTGAGCTCCATGCATATGTACGGCTGG 20776 | ||| | | |||| ||| ||| || |||| | |||||| | ||||| ||| Sbjct 9311501 CCACATCGCAGAGCCGA-CCTACGGC-AAACTGACCAGCATGCACTTTTACGGTTGG 9311447 Score = 93.3 bits (102), Expect = 5e-14 Identities = 78/96 (81%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 78525 CCGGCGCAGGTAGATGTTGGTCGTGTACGGCTCGAAAGCCTCGTTGTTCCCCATGATCTG 78584 || |||| |||||||||| | ||||| | ||||| | |||||||||||||| |||||| Sbjct 9311908 CCTGCGCGTGTAGATGTTGCTGGTGTAGGCCTCGATGGACTCGTTGTTCCCCAGGATCTG 9311967 Query 78585 GGCGGTCGAGGCGGTCGGCATGGGTGCGACCAGTAG 78620 |||||| ||||| || |||||||| || | ||| || Sbjct 9311968 GGCGGTGGAGGCTGTGGGCATGGGAGCCAGCAGCAG 9312003 Score = 87.8 bits (96), Expect = 2e-12 Identities = 71/86 (83%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 20385 TGCTCGTCGCGCCCATGCCGACCGCCTCGACCGCCCAGATCATGGGGAACAACGAGGCTT 20444 |||| | || |||||||| || ||||| |||||||||||| |||||||||||||| | Sbjct 9312002 TGCTGCTGGCTCCCATGCCCACAGCCTCCACCGCCCAGATCCTGGGGAACAACGAGTCCA 9311943 Query 20445 TCGAGCCGTACACGACCAACATCTAC 20470 ||||| | ||||| | |||||||||| Sbjct 9311942 TCGAGGCCTACACCAGCAACATCTAC 9311917 >seq1226 Length=411779 Score = 87.8 bits (96), Expect = 2e-12 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 59989 TAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGC 60048 |||| ||||| |||||| || || ||||||||||| || || | | || ||||||| Sbjct 204522 TAGCCTTTGCTGCCGTGGAGGGTATTTTCTTCTCTGGGTCCTTTGCTTCCATCTTCTGGC 204581 Query 60049 TCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACG 60108 | || || | ||||| ||||| ||||||| |||||||||||||| || | | |||| Sbjct 204582 TGAAGAAAAGGGGCCTGATGCCCGGCCTGACCTTCTCCAACGAGCTCATCAGCAGAGACG 204641 Query 60109 AGG 60111 ||| Sbjct 204642 AGG 204644 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548477935412400