Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Takifugu_20rubripes_20[refseq_20GCF_5F000180615.1_202011-10-13] 6,835 sequences; 391,484,715 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq11 174 2e-38 seq12 95.1 1e-14 seq1 86.0 7e-12 >seq11 Length=11238946 Score = 174 bits (192), Expect = 2e-38 Identities = 457/691 (66%), Gaps = 10/691 (1%) Strand=Plus/Minus Query 53267 AAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAATCACCCTCAGATG 53326 |||| || || || ||| | || || || || || || ||||| || || ||| || Sbjct 5179615 AAGTGGTTCACCCATGCCTCCCCGACACTCTTTAATGCAGGTACCAACAGGCCACAGCTG 5179556 Query 53327 TCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTACGAGACGCTC 53386 || |||||||||||| | || |||||||||||| ||||| ||||| || || ||||| Sbjct 5179555 TCCAGCTGCTTCCTGCTCGCCATGAAGGATGACAGCATCGAGGGCATTTATGACACGCTG 5179496 Query 53387 AAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTAT---CCACTGCTCGAAC 53443 || |||| || | ||||||||||| | | || || |||||| | | | ||| | Sbjct 5179495 AAACAGTGCGCGCTCATCTCCAAGTCGGCTGGAGGAATCGGTGTGGCCGTCAGCTGCA-- 5179438 Query 53444 GTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATGGAATCGTGCCT 53503 || | | | || | ||| || || || ||| | || |||| | || || Sbjct 5179437 -TCAGATCTACGGGAAGTTACATCGCTGGCACCAATGGCAACTCCAATGGGCTTGTCCCC 5179379 Query 53504 ATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTGGGAAGCGCAAG 53563 ||||| | || | ||||||||| || || || || |||||||||| ||| | Sbjct 5179378 ATGCTGAGAGTTTACAACAACACCGCACGCTATGTGGACCAGGGTGGAAACAAGAGGCCT 5179319 Query 53564 GGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTTTCTCGAGCTG 53623 ||| | |||||||| ||||| || || ||||| |||| || | || || || ||| || Sbjct 5179318 GGGGCTTTCGCCATGTACCTGGAACCCTGGCATTCCGATATATTTGACTTCCTGGAGTTG 5179259 Query 53624 CGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTT-TACAGCTCTGTGGAT 53682 ||| || | || ||| | | | | ||||| || ||| | | ||||||| Sbjct 5179258 AAGAAGAACACTGGAAAAGAGGAGCAGAGAGCCAGAGACCTTTTCTACGG-TATGTGGAT 5179200 Query 53683 TCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTGATGTGCCCGAA 53742 || ||| | |||||| | | |||||||| || |||| |||| || ||||| || | Sbjct 5179199 CCCTGACTTGTTCATGAAGAGGGTGGAGAGTAACCAGGACTGGTCTCTAATGTGTCCAGA 5179140 Query 53743 CGAGTGCCCCGGCCTCCAGG-GTGTCTACGGTGAGGAGTTTAACGAGATGTATCGGACGT 53801 ||| || ||||| || | | ||| || || ||||||||| | || | || | | Sbjct 5179139 CGAATGTCCCGGGCTGAATGAGTG-CTGGGGGGAGGAGTTTGAGAAGCTCTACACCAAAT 5179081 Query 53802 ACGCAGTTCAGGGCCGCTACAAGAAGAAGGTCAAGGCGCGTGAGGTATGGGATGCAATCC 53861 ||| | |||||| |||| ||| ||||| | |||| ||| |||| ||| Sbjct 5179080 ACGAGAAAGAAGGCCGCGTCAAGCGTGTGGTGAAGGCCCAGCAGGTTTGGCATGCCATCA 5179021 Query 53862 TCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAGGATTCGGTCAACGAGA 53921 | || |||| || || || || || |||||| |||||| ||| | ||| || Sbjct 5179020 TAGAGTCCCAGACTGAAACCGGCACTCCATACATGCTCTACAAAGATGCCTGCAATAGGA 5178961 Query 53922 AGAGCAACCAGAAGAACATCGGCGTCATCAA 53952 ||||||||||| |||| | ||| |||||| Sbjct 5178960 AGAGCAACCAGCAGAATCTGGGCACCATCAA 5178930 Score = 89.7 bits (98), Expect = 6e-13 Identities = 108/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 55493 CTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAACAACGAGGCG 55552 |||||| | || || ||||| ||||| || || || |||||| |||||||||||||| | Sbjct 5178412 CTGCTCTTAGCCCCGATGCCCACCGCCTCAACCGCCCAGATCCTGGGCAACAACGAGTCT 5178353 Query 55553 TTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAGTTTGTCATG 55612 |||| | ||||| | |||||||||| ||| || ||| | || ||||| || Sbjct 5178352 ATCGAAGCCTACACCAGCAACATCTACACCCGCAGGGTCCTGTCCGGGGAGTTCCAGATT 5178293 Query 55613 ATCAACAAGCACCTCGTCAAGGACCTG 55639 ||||| |||||| |||| |||||| Sbjct 5178292 GTCAACCCTCACCTCCTCAAAGACCTG 5178266 >seq12 Length=10661439 Score = 95.1 bits (104), Expect = 1e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 ||||| |||||||||| ||| |||||||| ||||| ||| | || ||||| || || Sbjct 6899961 GTGAAGATGTAACGAGGGCTGGCAGCATCTTTGCCTCCATTGATGCGAGTACCAAACTGA 6900020 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 || |||| || || ||||| ||||||| ||||||||| || || ||||||||||| Sbjct 6900021 CCCAGAGGCTGCAGGATGTTCAAGTTGTTGCTGCCCACAAAATTCTGGGCCAAGTTGACG 6900080 Query 117425 ATCGT 117429 || || Sbjct 6900081 ATGGT 6900085 Score = 86.0 bits (94), Expect = 7e-12 Identities = 96/126 (76%), Gaps = 2/126 (2%) Strand=Plus/Plus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTG- 152087 ||||||||||| || | |||||| ||||| ||||| || | || || |||||||| Sbjct 6899961 GTGAAGATGTAACGAGGGCTGGCAGCATCTTTGCCTCCATTGATGCGAGTACCAAACTGA 6900020 Query 152088 TCCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCAC 152147 ||||| |||| |||| ||| | ||||||| |||||| |||||||| ||||| || || Sbjct 6900021 CCCAGA-GGCTGCAGGATGTTCAAGTTGTTGCTGCCCACAAAATTCTGGGCCAAGTTGAC 6900079 Query 152148 AATCGT 152153 || || Sbjct 6900080 GATGGT 6900085 >seq1 Length=23260604 Score = 86.0 bits (94), Expect = 7e-12 Identities = 96/126 (76%), Gaps = 2/126 (2%) Strand=Plus/Plus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 |||||||||||||| | ||||| | |||||||| || ||||| |||||||||||| Sbjct 7593967 GTGAAGATGTATCGAGGACTGGCAGAGTCCTTGCCGCCGTGCAGCCTGGTTCCAAACTGT 7594026 Query 152089 -CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCAC 152147 ||||| |||| || | ||| || |||||| |||||||| || || |||||| || Sbjct 7594027 CCCAGA-GGCTGCAGCATGTTCAGATTGTTGCTTCCCACGAAGTTTTGGGCCAAACCAAC 7594085 Query 152148 AATCGT 152153 ||| || Sbjct 7594086 AATGGT 7594091 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547169247233000