Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Takifugu_20rubripes_20[refseq_20GCF_5F000180615.1_202011-10-13]
6,835 sequences; 391,484,715 total letters
Query= NC_028112.1
Length=178262
Score E
Sequences producing significant alignments: (Bits) Value
seq11 201 1e-46
seq15 172 6e-38
seq6 116 4e-21
seq1226 86.0 7e-12
seq12 82.4 9e-11
>seq11
Length=11238946
Score = 201 bits (222), Expect = 1e-46
Identities = 760/1173 (65%), Gaps = 46/1173 (4%)
Strand=Plus/Plus
Query 80540 CCCACATGTCGTGCTGCAAGATGCCCT--CCGACGCCGGAGACCCCGCGAACGTCTCGTA 80597
|||||||||||| ||| | |||||||| | ||| ||| || || || | || |||||
Sbjct 5178487 CCCACATGTCGTACTGAAGGATGCCCTTGCTGAC--CGGGGAGCCTTCGTAGGTTTCGTA 5178544
Query 80598 CGGGCC---CTCCGTCTTGGCCAGCTCACACGACTCCATAAGGGCCGCGTGATAAATGCA 80654
|| || ||| | |||||||| || | || ||||| |||| || |||
Sbjct 5178545 TGGCCCGAGCTCGGCA---GCCAGCTCGCAGCTCGCCTCGAGGGCTGCGTAGTAGATGGT 5178601
Query 80655 CTCAAAGACGCCCTTGTTCACACCGCGCGCCTGTGGGTCGTCGAACGACAAGCCCATCAT 80714
||| |||| |||||| | | || | ||| ||||||| | | ||| |
Sbjct 5178602 CTCGAAGATCTGGGTGTTCAGAAGCTGAGCTTCGGGGCTTTCGAACGGGTAACGCATGAG 5178661
Query 80715 CATGAACACGTCAGCCAGGCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTTCGA 80774
||||| |||| |||| ||||| || ||||| | || || | |||||||||||| ||
Sbjct 5178662 GATGAATGCGTCGGCCAAACCCTGGACACCGATTCCTATTGGCCTGTGGCGCTTGTTGGA 5178721
Query 80775 TCGCTCGGCCTCCGGAATTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGT 80834
||| || || || | ||| || | ||| |||| |||| ||||| ||| | |
Sbjct 5178722 CTTCTCAGCTTCGGGCACTGGATAGTAATTAATATCTATGATCTTGTTCAAGTT---TTT 5178778
Query 80835 AACAAC--CCGTG-TAACATCATGAAGTTTCTGAAAGTCGAATTGGTTCCCCTTCACAAA 80891
||||| || || | ||| || ||||| |||||||| || ||| || ||
Sbjct 5178779 GACAACTACCTTGGTCACAGCAGCTAGTTTTTGAAAGTCAAAAG---TCCGCT-CAGCGG 5178834
Query 80892 TGCCGGA-AGGCTCAG------GGACGCCAGATTGCACACGGCCACCTCTTCAGCATCTG 80944
|| || | | | | || ||| |||||||| || || || ||||| || || |||
Sbjct 5178835 TGACGTACATGTTGAGTGCGACGGAGGCCAGATTACAAACCGCTACCTCGTC-GCTGCTG 5178893
Query 80945 -TAAACTCGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGG 81003
| | || || ||||| ||||| | ||| ||| || || ||||| || | ||||
Sbjct 5178894 GTGTATTCCACAATTTCTGTGCATAGATTGCTGCTCTTGATGGTGCCCAGATTCTGCTGG 5178953
Query 81004 TTTGACTTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGT 81063
|| ||| ||||| || || |||||| |||||| || || ||||| || |||
Sbjct 5178954 TTGCTCTTCCTATTGCAGGCATCTTTGTAGAGCATGTATGGAGTGCCGGTTTCAGTCTGG 5179013
Query 81064 GACTTGAGGATGGCGTCCCAAATCTCGCGCGCCTTGACCAC---CTTGCGGAATTTGCCT 81120
|||| | |||||| | ||||| || | ||||| ||||| |||| | ||||
Sbjct 5179014 GACTCTATGATGGCATGCCAAACCTGCTGGGCCTTCACCACACGCTTGACGCG---GCCT 5179070
Query 81121 TCGGCCACATACTTGGCGTA-AGCTTCGTCGAACTTGGCACCGTGAAGTTCAGTGAGGTC 81179
|| | | || |||| ||| |||||| || |||| | || ||| | || |
Sbjct 5179071 TCTTTCTCGTATTTGGTGTAGAGCTTC-TCAAACTCCTCCCCCCAGCACTCATTCAGCCC 5179129
Query 81180 TGGGCACTCGTTAGGGCACATCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAA 81239
|| || |||| || ||||| || |||||| || |||| || |||||||||
Sbjct 5179130 GGGACATTCGTCTGGACACATTAGAGACCAGTCCTGGTTACTCTCCACCCTCTTCATGAA 5179189
Query 81240 AGCGTCAGGGATCCAGAGGGCGGTGAACAGGTCGCGGCAGCGCGCCTCCTCATCACCCTG 81299
|||||||||||| | || ||| ||||| | | | | |||||| | ||
Sbjct 5179190 CAAGTCAGGGATCCACATACCGTAGAAAAGGTCTCTGGCTCTCTGCTCCTCTTTTCCAGT 5179249
Query 81300 GTTGAGGCGCAACTCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGC 81359
||| |||||| || ||||| | || || | |||||| || ||||| |||| |||
Sbjct 5179250 GTTCTTCTTCAACTCCAGGAAGTCAAATATATCGGAATGCCAGGGTTCCAGGTACATGGC 5179309
Query 81360 GATCGACCCCTTGCGACGG----CCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATA 81415
|| | |||| || | |||||||||| || || || || || ||| | |
Sbjct 5179310 GAAAG-CCCCAGGCCTCTTGTTTCCACCCTGGTCCACATAGCGTGCGGTGTTGTTGTAAA 5179368
Query 81416 CACGCAACATAGGGATGATACCATCTGACTGACCGTTCGTACCCACGATACGCGAC--CC 81473
| | || ||| |||| | |||| || | || || || || |||| | || ||
Sbjct 5179369 CTCTCAGCATGGGGACAAGCCCATTGGAGTTGCCATTGGTGCCAGCGAT--GTAACTTCC 5179426
Query 81474 CTTGGCGCGCACCTTGCTGATTGAAAGACCGATGCCACCTGACCACTTTGAAATCTGAGC 81533
| | | | | ||||| | | |||||| || || | | |||| || || | ||
Sbjct 5179427 CGTAGATCTGATGCAGCTGACGGCCACACCGATTCCTCCAGCCGACTTGGAGATGAGCGC 5179486
Query 81534 ACACCGGTTCATGGTCTCATAAATTCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAA 81593
||| | |||| || |||||||| ||||||||||| || | |||||| | |||| |||
Sbjct 5179487 GCACTGTTTCAGCGTGTCATAAATGCCCTCGATGCTGTCATCCTTCATGGCGAGCAGGAA 5179546
Query 81594 ACAGCTTGACATCTGAGGGCTTTTTGAGCCGGCATTGAACAGTGTTGGGGTCGCGTGAAT 81653
||||| |||| ||| || || || | || ||||| || ||||| |||| || || |
Sbjct 5179547 GCAGCTGGACAGCTGTGGCCTGTTGGTACCTGCATTAAAGAGTGTCGGGGAGGCATGGGT 5179606
Query 81654 GAAATAACGGTTTGACATCAGGTCATAGGTTTC 81686
||| | | ||||| ||||| ||||||||
Sbjct 5179607 GAACCACTTCTCTGACAGCAGGTTGTAGGTTTC 5179639
>seq15
Length=11516971
Score = 172 bits (190), Expect = 6e-38
Identities = 169/218 (78%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| |||||||| || || || || |||||||| || ||||||||||| ||| | ||
Sbjct 2477656 ATGCAGATCTTTGTAAAAACCCTGACTGGCAAGACCATCACTCTTGAGGTGGAGCCCAGT 2477597
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | ||||| ||| ||||||| || || ||||||||||| || ||||| || || |||
Sbjct 2477596 GACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTGATCAG 2477537
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
||| | || || |||||||| ||||| || || |||| || ||||| | ||||| ||
Sbjct 2477536 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCCGACTACAAC 2477477
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCT 27623
|||| ||||| ||||| || || || ||| |||||||
Sbjct 2477476 ATCCAGAAGGAGTCCACCCTCCACCTTGTCCTGCGTCT 2477439
Score = 168 bits (186), Expect = 8e-37
Identities = 176/231 (76%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| |||||||| || || || || |||||||| || ||||||||||| ||| | |
Sbjct 2476972 ATGCAGATCTTTGTAAAAACCCTGACTGGCAAGACCATCACTCTTGAGGTGGAGCCCAGC 2476913
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | ||||| || ||||||| || || ||||||||||| || ||||| || || |||
Sbjct 2476912 GACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTGATCAG 2476853
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
||| | || || |||||||| ||||| || || |||| || ||||| | ||||| ||
Sbjct 2476852 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCCGACTACAAC 2476793
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACAA 27636
|||| ||||| ||||| || || || ||| ||||||| | ||||| |||
Sbjct 2476792 ATCCAGAAGGAGTCCACCCTCCACCTTGTCCTGCGTCTGAGGGGTGGTCAA 2476742
Score = 163 bits (180), Expect = 3e-35
Identities = 167/218 (77%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| |||||||| || || || || |||||||| || ||||||||||| ||| | |
Sbjct 2477200 ATGCAGATCTTTGTAAAAACCCTGACTGGCAAGACCATCACTCTTGAGGTGGAGCCCAGC 2477141
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | ||||| || ||||||| || || ||||||||||| || ||||| || || |||
Sbjct 2477140 GACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTGATCAG 2477081
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
||| | || || |||||||| ||||| || || |||| || ||||| | ||||| ||
Sbjct 2477080 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCCGACTACAAC 2477021
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCT 27623
|||| ||||| ||||| || || || ||| |||||||
Sbjct 2477020 ATCCAGAAGGAGTCCACCCTCCACCTTGTCCTGCGTCT 2476983
Score = 163 bits (180), Expect = 3e-35
Identities = 167/218 (77%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| |||||||| || || || || |||||||| || ||||||||||| ||| | |
Sbjct 2477428 ATGCAGATCTTTGTAAAAACCCTGACTGGCAAGACCATCACTCTTGAGGTGGAGCCCAGC 2477369
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | ||||| || ||||||| || || ||||||||||| || ||||| || || |||
Sbjct 2477368 GACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTGATCAG 2477309
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
||| | || || |||||||| ||||| || || |||| || ||||| | ||||| ||
Sbjct 2477308 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCCGACTACAAC 2477249
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCT 27623
|||| ||||| ||||| || || || ||| |||||||
Sbjct 2477248 ATCCAGAAGGAGTCCACCCTCCACCTTGTCCTGCGTCT 2477211
Score = 89.7 bits (98), Expect = 6e-13
Identities = 114/157 (73%), Gaps = 0/157 (0%)
Strand=Plus/Plus
Query 80948 ACTCGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTG 81007
|||| || || || ||||||| ||| || || || || |||||||| | ||||||
Sbjct 9312833 ACTCTACAATCTCTGTGCACAGATTGCTGGATTTGATGGTGCCCAGGTTCTGCTGGTTGC 9312892
Query 81008 ACTTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACT 81067
||| |||||| |||||||||||| |||||| || || ||||| || || ||||
Sbjct 9312893 TCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTATGGTGTGCCGGTTTCTGTTTGAGACT 9312952
Query 81068 TGAGGATGGCGTCCCAAATCTCGCGCGCCTTGACCAC 81104
|| |||||||| ||| | || | ||||| |||||
Sbjct 9312953 CGATGATGGCGTACCACAGCTGCTGGGCCTTCACCAC 9312989
>seq6
Length=9412079
Score = 116 bits (128), Expect = 4e-21
Identities = 162/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| || ||||| ||||| || || | |||||| || | ||| | || || | |
Sbjct 6657186 ATGCAGATATTTGTGAAGACCCTGACTGACAAGACCATCAGTCTGAATGTGGAACCCAAT 6657245
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| ||||||| ||| | |||| || || || || |||||||| || ||||| || |||
Sbjct 6657246 GACAGCATTGTGAATATCAAGGTCAAGATCCATGATAAGGAGGGGATCCCTCCTGATCAG 6657305
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|||||||| || |||||||| ||||| || |||| | | ||||| | ||||| ||
Sbjct 6657306 CAGCGTCTCATCTTTGCTGGCAAGCAGCTGCAGGACGGCCACACCCTCTCTGACTACAAC 6657365
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||| ||||| | ||| || || || || | ||| | ||||||
Sbjct 6657366 ATCCAGAAGGAGTTCACCCTCCACCTTGTGCTCCGTTTGTCCGGTGG 6657412
Score = 107 bits (118), Expect = 2e-18
Identities = 118/157 (75%), Gaps = 0/157 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| || ||||| ||||| || || |||||||| || | ||| | || || | |
Sbjct 6656958 ATGCAGATATTTGTGAAGACCCTGACTGGCAAGACCATCAGTCTGAATGTGGAACCCAAT 6657017
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| ||||||| ||| | |||| || || || || |||||||| || ||||| || |||
Sbjct 6657018 GACAGCATTGTGAATATCAAGGTCAAGATCCATGATAAGGAGGGGATCCCTCCTGATCAG 6657077
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATG 27562
||| |||| || | |||||||||||| || |||||||
Sbjct 6657078 CAGTGTCTGATCTATGCTGGTAAGCAGCTTGAGGATG 6657114
Score = 105 bits (116), Expect = 8e-18
Identities = 151/210 (72%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTC-AGG 27464
||| | || ||||| | ||| | || |||||||| || ||||| ||| |||| | |
Sbjct 6656730 ATGAAGATATTTGTGAGGACCCAGACTGGCAAGACCATCACTCT-GAGAGTGAGACCAAA 6656788
Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524
||| ||||||| ||| | || | | || ||| |||||||| || ||||| |||||
Sbjct 6656789 TGACAGCATTGAGAATGTCAAATCCATGATCTGGGATAAGGAGGGGATCCCTCCTGACCA 6656848
Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584
|||| |||| || | |||||||||||| || ||||| | | |||| | ||||| ||
Sbjct 6656849 GCAGTGTCTGATCTATGCTGGTAAGCAGCTTGAGGACGGGTGCTCCCTCTCTGACTACAA 6656908
Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGT 27614
|||| || |||||||| || || || ||
Sbjct 6656909 CATCCAGAATGAATCCACCCTCCACCTTGT 6656938
Score = 104 bits (114), Expect = 3e-17
Identities = 141/197 (72%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| |||||||| ||||| | |||||||| || || | ||||| || || |
Sbjct 6656501 ATGCAGATCTTTGTGAAGACCTACATTGGCAAGACCATCACCGTGGAGGTGGAACCAAAT 6656560
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| ||||||| ||| | ||||| || || || ||||||||||| ||||| || |
Sbjct 6656561 GAAAGCATTGAGAATGTCAAGGCCAAGATCTGCGATAAGGAGGGAATCCCTCCTTTCCTG 6656620
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|||||||| || |||||| |||||| || ||||||| | | ||| | ||| ||
Sbjct 6656621 CAGCGTCTGATCTTTGCTACTAAGCAGCTGGAGGATGGAGGCAACCTCTCCACCTACAAC 6656680
Query 27586 GTCCAAAAGGAATCCAC 27602
|||| ||||| |||||
Sbjct 6656681 ATCCAGAAGGAGTCCAC 6656697
>seq1226
Length=411779
Score = 86.0 bits (94), Expect = 7e-12
Identities = 92/122 (75%), Gaps = 0/122 (0%)
Strand=Plus/Plus
Query 64725 AGCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATTTTCTGGCT 64784
||| ||||| ||||| || |||||||| |||||||| || ||| || ||||||||
Sbjct 204523 AGCCTTTGCTGCCGTGGAGGGTATTTTCTTCTCTGGGTCCTTTGCTTCCATCTTCTGGCT 204582
Query 64785 AAAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATCTCTCGGGACGA 64844
|| || ||||||||||||| || ||| | || || |||||||| ||| | |||||
Sbjct 204583 GAAGAAAAGGGGCCTGATGCCCGGCCTGACCTTCTCCAACGAGCTCATCAGCAGAGACGA 204642
Query 64845 GG 64846
||
Sbjct 204643 GG 204644
>seq12
Length=10661439
Score = 82.4 bits (90), Expect = 9e-11
Identities = 96/127 (76%), Gaps = 2/127 (2%)
Strand=Plus/Minus
Query 32125 ACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAATAACCTGAACTTACTCGAGCCA 32184
||||| |||||| | || ||||| ||||| || || ||| ||||| | || ||||
Sbjct 6900085 ACCATCGTCAACTTGGCCCAGAATTTTGTGGGCAGCAACAACTTGAACATCCTGCAGCC- 6900027
Query 32185 TCTGGA-CAGTTTGGGACCCGGCTCGCCGGTGGCAAGGATGCTGCGAGCTCCCGTTACAT 32243
||||| |||||||| || || || || ||||| |||||||| ||| | ||||||||
Sbjct 6900026 TCTGGGTCAGTTTGGTACTCGCATCAATGGAGGCAAAGATGCTGCCAGCCCTCGTTACAT 6899967
Query 32244 CTTCACC 32250
|||||||
Sbjct 6899966 CTTCACC 6899960
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 570261674105200
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