Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Takifugu_20rubripes_20[refseq_20GCF_5F000180615.1_202011-10-13] 6,835 sequences; 391,484,715 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq11 201 1e-46 seq15 172 6e-38 seq6 116 4e-21 seq1226 86.0 7e-12 seq12 82.4 9e-11 >seq11 Length=11238946 Score = 201 bits (222), Expect = 1e-46 Identities = 760/1173 (65%), Gaps = 46/1173 (4%) Strand=Plus/Plus Query 80540 CCCACATGTCGTGCTGCAAGATGCCCT--CCGACGCCGGAGACCCCGCGAACGTCTCGTA 80597 |||||||||||| ||| | |||||||| | ||| ||| || || || | || ||||| Sbjct 5178487 CCCACATGTCGTACTGAAGGATGCCCTTGCTGAC--CGGGGAGCCTTCGTAGGTTTCGTA 5178544 Query 80598 CGGGCC---CTCCGTCTTGGCCAGCTCACACGACTCCATAAGGGCCGCGTGATAAATGCA 80654 || || ||| | |||||||| || | || ||||| |||| || ||| Sbjct 5178545 TGGCCCGAGCTCGGCA---GCCAGCTCGCAGCTCGCCTCGAGGGCTGCGTAGTAGATGGT 5178601 Query 80655 CTCAAAGACGCCCTTGTTCACACCGCGCGCCTGTGGGTCGTCGAACGACAAGCCCATCAT 80714 ||| |||| |||||| | | || | ||| ||||||| | | ||| | Sbjct 5178602 CTCGAAGATCTGGGTGTTCAGAAGCTGAGCTTCGGGGCTTTCGAACGGGTAACGCATGAG 5178661 Query 80715 CATGAACACGTCAGCCAGGCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTTCGA 80774 ||||| |||| |||| ||||| || ||||| | || || | |||||||||||| || Sbjct 5178662 GATGAATGCGTCGGCCAAACCCTGGACACCGATTCCTATTGGCCTGTGGCGCTTGTTGGA 5178721 Query 80775 TCGCTCGGCCTCCGGAATTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGT 80834 ||| || || || | ||| || | ||| |||| |||| ||||| ||| | | Sbjct 5178722 CTTCTCAGCTTCGGGCACTGGATAGTAATTAATATCTATGATCTTGTTCAAGTT---TTT 5178778 Query 80835 AACAAC--CCGTG-TAACATCATGAAGTTTCTGAAAGTCGAATTGGTTCCCCTTCACAAA 80891 ||||| || || | ||| || ||||| |||||||| || ||| || || Sbjct 5178779 GACAACTACCTTGGTCACAGCAGCTAGTTTTTGAAAGTCAAAAG---TCCGCT-CAGCGG 5178834 Query 80892 TGCCGGA-AGGCTCAG------GGACGCCAGATTGCACACGGCCACCTCTTCAGCATCTG 80944 || || | | | | || ||| |||||||| || || || ||||| || || ||| Sbjct 5178835 TGACGTACATGTTGAGTGCGACGGAGGCCAGATTACAAACCGCTACCTCGTC-GCTGCTG 5178893 Query 80945 -TAAACTCGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGG 81003 | | || || ||||| ||||| | ||| ||| || || ||||| || | |||| Sbjct 5178894 GTGTATTCCACAATTTCTGTGCATAGATTGCTGCTCTTGATGGTGCCCAGATTCTGCTGG 5178953 Query 81004 TTTGACTTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGT 81063 || ||| ||||| || || |||||| |||||| || || ||||| || ||| Sbjct 5178954 TTGCTCTTCCTATTGCAGGCATCTTTGTAGAGCATGTATGGAGTGCCGGTTTCAGTCTGG 5179013 Query 81064 GACTTGAGGATGGCGTCCCAAATCTCGCGCGCCTTGACCAC---CTTGCGGAATTTGCCT 81120 |||| | |||||| | ||||| || | ||||| ||||| |||| | |||| Sbjct 5179014 GACTCTATGATGGCATGCCAAACCTGCTGGGCCTTCACCACACGCTTGACGCG---GCCT 5179070 Query 81121 TCGGCCACATACTTGGCGTA-AGCTTCGTCGAACTTGGCACCGTGAAGTTCAGTGAGGTC 81179 || | | || |||| ||| |||||| || |||| | || ||| | || | Sbjct 5179071 TCTTTCTCGTATTTGGTGTAGAGCTTC-TCAAACTCCTCCCCCCAGCACTCATTCAGCCC 5179129 Query 81180 TGGGCACTCGTTAGGGCACATCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAA 81239 || || |||| || ||||| || |||||| || |||| || ||||||||| Sbjct 5179130 GGGACATTCGTCTGGACACATTAGAGACCAGTCCTGGTTACTCTCCACCCTCTTCATGAA 5179189 Query 81240 AGCGTCAGGGATCCAGAGGGCGGTGAACAGGTCGCGGCAGCGCGCCTCCTCATCACCCTG 81299 |||||||||||| | || ||| ||||| | | | | |||||| | || Sbjct 5179190 CAAGTCAGGGATCCACATACCGTAGAAAAGGTCTCTGGCTCTCTGCTCCTCTTTTCCAGT 5179249 Query 81300 GTTGAGGCGCAACTCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGC 81359 ||| |||||| || ||||| | || || | |||||| || ||||| |||| ||| Sbjct 5179250 GTTCTTCTTCAACTCCAGGAAGTCAAATATATCGGAATGCCAGGGTTCCAGGTACATGGC 5179309 Query 81360 GATCGACCCCTTGCGACGG----CCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATA 81415 || | |||| || | |||||||||| || || || || || ||| | | Sbjct 5179310 GAAAG-CCCCAGGCCTCTTGTTTCCACCCTGGTCCACATAGCGTGCGGTGTTGTTGTAAA 5179368 Query 81416 CACGCAACATAGGGATGATACCATCTGACTGACCGTTCGTACCCACGATACGCGAC--CC 81473 | | || ||| |||| | |||| || | || || || || |||| | || || Sbjct 5179369 CTCTCAGCATGGGGACAAGCCCATTGGAGTTGCCATTGGTGCCAGCGAT--GTAACTTCC 5179426 Query 81474 CTTGGCGCGCACCTTGCTGATTGAAAGACCGATGCCACCTGACCACTTTGAAATCTGAGC 81533 | | | | | ||||| | | |||||| || || | | |||| || || | || Sbjct 5179427 CGTAGATCTGATGCAGCTGACGGCCACACCGATTCCTCCAGCCGACTTGGAGATGAGCGC 5179486 Query 81534 ACACCGGTTCATGGTCTCATAAATTCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAA 81593 ||| | |||| || |||||||| ||||||||||| || | |||||| | |||| ||| Sbjct 5179487 GCACTGTTTCAGCGTGTCATAAATGCCCTCGATGCTGTCATCCTTCATGGCGAGCAGGAA 5179546 Query 81594 ACAGCTTGACATCTGAGGGCTTTTTGAGCCGGCATTGAACAGTGTTGGGGTCGCGTGAAT 81653 ||||| |||| ||| || || || | || ||||| || ||||| |||| || || | Sbjct 5179547 GCAGCTGGACAGCTGTGGCCTGTTGGTACCTGCATTAAAGAGTGTCGGGGAGGCATGGGT 5179606 Query 81654 GAAATAACGGTTTGACATCAGGTCATAGGTTTC 81686 ||| | | ||||| ||||| |||||||| Sbjct 5179607 GAACCACTTCTCTGACAGCAGGTTGTAGGTTTC 5179639 >seq15 Length=11516971 Score = 172 bits (190), Expect = 6e-38 Identities = 169/218 (78%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| || || || || |||||||| || ||||||||||| ||| | || Sbjct 2477656 ATGCAGATCTTTGTAAAAACCCTGACTGGCAAGACCATCACTCTTGAGGTGGAGCCCAGT 2477597 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| ||| ||||||| || || ||||||||||| || ||||| || || ||| Sbjct 2477596 GACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTGATCAG 2477537 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || |||||||| ||||| || || |||| || ||||| | ||||| || Sbjct 2477536 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCCGACTACAAC 2477477 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCT 27623 |||| ||||| ||||| || || || ||| ||||||| Sbjct 2477476 ATCCAGAAGGAGTCCACCCTCCACCTTGTCCTGCGTCT 2477439 Score = 168 bits (186), Expect = 8e-37 Identities = 176/231 (76%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| || || || || |||||||| || ||||||||||| ||| | | Sbjct 2476972 ATGCAGATCTTTGTAAAAACCCTGACTGGCAAGACCATCACTCTTGAGGTGGAGCCCAGC 2476913 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| || ||||||| || || ||||||||||| || ||||| || || ||| Sbjct 2476912 GACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTGATCAG 2476853 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || |||||||| ||||| || || |||| || ||||| | ||||| || Sbjct 2476852 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCCGACTACAAC 2476793 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACAA 27636 |||| ||||| ||||| || || || ||| ||||||| | ||||| ||| Sbjct 2476792 ATCCAGAAGGAGTCCACCCTCCACCTTGTCCTGCGTCTGAGGGGTGGTCAA 2476742 Score = 163 bits (180), Expect = 3e-35 Identities = 167/218 (77%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| || || || || |||||||| || ||||||||||| ||| | | Sbjct 2477200 ATGCAGATCTTTGTAAAAACCCTGACTGGCAAGACCATCACTCTTGAGGTGGAGCCCAGC 2477141 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| || ||||||| || || ||||||||||| || ||||| || || ||| Sbjct 2477140 GACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTGATCAG 2477081 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || |||||||| ||||| || || |||| || ||||| | ||||| || Sbjct 2477080 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCCGACTACAAC 2477021 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCT 27623 |||| ||||| ||||| || || || ||| ||||||| Sbjct 2477020 ATCCAGAAGGAGTCCACCCTCCACCTTGTCCTGCGTCT 2476983 Score = 163 bits (180), Expect = 3e-35 Identities = 167/218 (77%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| || || || || |||||||| || ||||||||||| ||| | | Sbjct 2477428 ATGCAGATCTTTGTAAAAACCCTGACTGGCAAGACCATCACTCTTGAGGTGGAGCCCAGC 2477369 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| || ||||||| || || ||||||||||| || ||||| || || ||| Sbjct 2477368 GACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTGATCAG 2477309 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || |||||||| ||||| || || |||| || ||||| | ||||| || Sbjct 2477308 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCCGACTACAAC 2477249 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCT 27623 |||| ||||| ||||| || || || ||| ||||||| Sbjct 2477248 ATCCAGAAGGAGTCCACCCTCCACCTTGTCCTGCGTCT 2477211 Score = 89.7 bits (98), Expect = 6e-13 Identities = 114/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 80948 ACTCGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTG 81007 |||| || || || ||||||| ||| || || || || |||||||| | |||||| Sbjct 9312833 ACTCTACAATCTCTGTGCACAGATTGCTGGATTTGATGGTGCCCAGGTTCTGCTGGTTGC 9312892 Query 81008 ACTTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACT 81067 ||| |||||| |||||||||||| |||||| || || ||||| || || |||| Sbjct 9312893 TCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTATGGTGTGCCGGTTTCTGTTTGAGACT 9312952 Query 81068 TGAGGATGGCGTCCCAAATCTCGCGCGCCTTGACCAC 81104 || |||||||| ||| | || | ||||| ||||| Sbjct 9312953 CGATGATGGCGTACCACAGCTGCTGGGCCTTCACCAC 9312989 >seq6 Length=9412079 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || ||||| ||||| || || | |||||| || | ||| | || || | | Sbjct 6657186 ATGCAGATATTTGTGAAGACCCTGACTGACAAGACCATCAGTCTGAATGTGGAACCCAAT 6657245 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || ||||||| ||| | |||| || || || || |||||||| || ||||| || ||| Sbjct 6657246 GACAGCATTGTGAATATCAAGGTCAAGATCCATGATAAGGAGGGGATCCCTCCTGATCAG 6657305 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || |||||||| ||||| || |||| | | ||||| | ||||| || Sbjct 6657306 CAGCGTCTCATCTTTGCTGGCAAGCAGCTGCAGGACGGCCACACCCTCTCTGACTACAAC 6657365 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| | ||| || || || || | ||| | |||||| Sbjct 6657366 ATCCAGAAGGAGTTCACCCTCCACCTTGTGCTCCGTTTGTCCGGTGG 6657412 Score = 107 bits (118), Expect = 2e-18 Identities = 118/157 (75%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || ||||| ||||| || || |||||||| || | ||| | || || | | Sbjct 6656958 ATGCAGATATTTGTGAAGACCCTGACTGGCAAGACCATCAGTCTGAATGTGGAACCCAAT 6657017 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || ||||||| ||| | |||| || || || || |||||||| || ||||| || ||| Sbjct 6657018 GACAGCATTGTGAATATCAAGGTCAAGATCCATGATAAGGAGGGGATCCCTCCTGATCAG 6657077 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATG 27562 ||| |||| || | |||||||||||| || ||||||| Sbjct 6657078 CAGTGTCTGATCTATGCTGGTAAGCAGCTTGAGGATG 6657114 Score = 105 bits (116), Expect = 8e-18 Identities = 151/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTC-AGG 27464 ||| | || ||||| | ||| | || |||||||| || ||||| ||| |||| | | Sbjct 6656730 ATGAAGATATTTGTGAGGACCCAGACTGGCAAGACCATCACTCT-GAGAGTGAGACCAAA 6656788 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||| ||||||| ||| | || | | || ||| |||||||| || ||||| ||||| Sbjct 6656789 TGACAGCATTGAGAATGTCAAATCCATGATCTGGGATAAGGAGGGGATCCCTCCTGACCA 6656848 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 |||| |||| || | |||||||||||| || ||||| | | |||| | ||||| || Sbjct 6656849 GCAGTGTCTGATCTATGCTGGTAAGCAGCTTGAGGACGGGTGCTCCCTCTCTGACTACAA 6656908 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGT 27614 |||| || |||||||| || || || || Sbjct 6656909 CATCCAGAATGAATCCACCCTCCACCTTGT 6656938 Score = 104 bits (114), Expect = 3e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| | |||||||| || || | ||||| || || | Sbjct 6656501 ATGCAGATCTTTGTGAAGACCTACATTGGCAAGACCATCACCGTGGAGGTGGAACCAAAT 6656560 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || ||||||| ||| | ||||| || || || ||||||||||| ||||| || | Sbjct 6656561 GAAAGCATTGAGAATGTCAAGGCCAAGATCTGCGATAAGGAGGGAATCCCTCCTTTCCTG 6656620 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || |||||| |||||| || ||||||| | | ||| | ||| || Sbjct 6656621 CAGCGTCTGATCTTTGCTACTAAGCAGCTGGAGGATGGAGGCAACCTCTCCACCTACAAC 6656680 Query 27586 GTCCAAAAGGAATCCAC 27602 |||| ||||| ||||| Sbjct 6656681 ATCCAGAAGGAGTCCAC 6656697 >seq1226 Length=411779 Score = 86.0 bits (94), Expect = 7e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 64725 AGCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATTTTCTGGCT 64784 ||| ||||| ||||| || |||||||| |||||||| || ||| || |||||||| Sbjct 204523 AGCCTTTGCTGCCGTGGAGGGTATTTTCTTCTCTGGGTCCTTTGCTTCCATCTTCTGGCT 204582 Query 64785 AAAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATCTCTCGGGACGA 64844 || || ||||||||||||| || ||| | || || |||||||| ||| | ||||| Sbjct 204583 GAAGAAAAGGGGCCTGATGCCCGGCCTGACCTTCTCCAACGAGCTCATCAGCAGAGACGA 204642 Query 64845 GG 64846 || Sbjct 204643 GG 204644 >seq12 Length=10661439 Score = 82.4 bits (90), Expect = 9e-11 Identities = 96/127 (76%), Gaps = 2/127 (2%) Strand=Plus/Minus Query 32125 ACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAATAACCTGAACTTACTCGAGCCA 32184 ||||| |||||| | || ||||| ||||| || || ||| ||||| | || |||| Sbjct 6900085 ACCATCGTCAACTTGGCCCAGAATTTTGTGGGCAGCAACAACTTGAACATCCTGCAGCC- 6900027 Query 32185 TCTGGA-CAGTTTGGGACCCGGCTCGCCGGTGGCAAGGATGCTGCGAGCTCCCGTTACAT 32243 ||||| |||||||| || || || || ||||| |||||||| ||| | |||||||| Sbjct 6900026 TCTGGGTCAGTTTGGTACTCGCATCAATGGAGGCAAAGATGCTGCCAGCCCTCGTTACAT 6899967 Query 32244 CTTCACC 32250 ||||||| Sbjct 6899966 CTTCACC 6899960 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570261674105200