Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Takifugu_20rubripes_20[refseq_20GCF_5F000180615.1_202011-10-13] 6,835 sequences; 391,484,715 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq15 181 2e-40 seq6 113 1e-19 seq14 98.7 2e-15 seq20 86.0 1e-11 >seq15 Length=11516971 Score = 181 bits (200), Expect = 2e-40 Identities = 169/215 (79%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||||||||| || |||||||| || |||||||| || || | ||||| | |||||| Sbjct 2477445 AGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCT 2477504 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| || ||||| || | || || ||||| |||| |||||||||||| Sbjct 2477505 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCC 2477564 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| ||||| || || ||||||||| | || ||||| |||||||| ||| Sbjct 2477565 TGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCCACCTCAAGAGTGATGGTC 2477624 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || || || || || |||||||| | |||||| || Sbjct 2477625 TTGCCAGTCAGGGTTTTTACAAAGATCTGCATGTT 2477659 Score = 179 bits (198), Expect = 9e-40 Identities = 167/212 (79%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||||||||| || |||||||| || |||||||| || || | ||||| | |||||| Sbjct 2476761 AGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCT 2476820 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| || ||||| || | || || ||||| |||| |||||||||||| Sbjct 2476821 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCC 2476880 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| |||||||| || |||||||| | || ||||| |||||||| ||| Sbjct 2476881 TGGATCTTGGCCTTCACGTTCTCAATGGTGTCGCTGGGCTCCACCTCAAGAGTGATGGTC 2476940 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || || |||||||| | |||||| Sbjct 2476941 TTGCCAGTCAGGGTTTTTACAAAGATCTGCAT 2476972 Score = 179 bits (198), Expect = 9e-40 Identities = 167/212 (79%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||||||||| || |||||||| || |||||||| || || | ||||| | |||||| Sbjct 2476989 AGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCT 2477048 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| || ||||| || | || || ||||| |||| |||||||||||| Sbjct 2477049 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCC 2477108 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| |||||||| || |||||||| | || ||||| |||||||| ||| Sbjct 2477109 TGGATCTTGGCCTTCACGTTCTCAATGGTGTCGCTGGGCTCCACCTCAAGAGTGATGGTC 2477168 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || || |||||||| | |||||| Sbjct 2477169 TTGCCAGTCAGGGTTTTTACAAAGATCTGCAT 2477200 Score = 179 bits (198), Expect = 9e-40 Identities = 167/212 (79%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||||||||| || |||||||| || |||||||| || || | ||||| | |||||| Sbjct 2477217 AGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCT 2477276 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| || ||||| || | || || ||||| |||| |||||||||||| Sbjct 2477277 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCC 2477336 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| |||||||| || |||||||| | || ||||| |||||||| ||| Sbjct 2477337 TGGATCTTGGCCTTCACGTTCTCAATGGTGTCGCTGGGCTCCACCTCAAGAGTGATGGTC 2477396 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || || |||||||| | |||||| Sbjct 2477397 TTGCCAGTCAGGGTTTTTACAAAGATCTGCAT 2477428 >seq6 Length=9412079 Score = 113 bits (124), Expect = 1e-19 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || |||||||| || ||| |||| || |||||||| || || | ||||| || || Sbjct 6657397 AGCACAAGGTGGAGGGTGAACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGTGGCCGTCC 6657338 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 | |||||||||||| || ||||| || || || || |||||||| | || ||||| || Sbjct 6657337 TGCAGCTGCTTGCCAGCAAAGATGAGACGCTGCTGATCAGGAGGGATCCCCTCCTTATCA 6657278 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || | || | ||| ||||| | ||| || | ||| |||| ||| Sbjct 6657277 TGGATCTTGACCTTGATATTCACAATGCTGTCATTGGGTTCCACATTCAGACTGATGGTC 6657218 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || | || || ||||| ||||| | |||||| Sbjct 6657217 TTGTCAGTCAGGGTCTTCACAAATATCTGCAT 6657186 Score = 98.7 bits (108), Expect = 2e-15 Identities = 151/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || |||||||| || ||||| || || |||||||| || || | |||| | || || Sbjct 6656941 AGCACAAGGTGGAGGGTGGATTCATTCTGGATGTTGTAGTCAGAGAGGGAGCACCCGTCC 6656882 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || |||||||| || || |||| || | || ||||||||||| | || ||||| ||| Sbjct 6656881 TCAAGCTGCTTACCAGCATAGATCAGACACTGCTGGTCAGGAGGGATCCCCTCCTTATCC 6656822 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCA-GAGCTTTCAACCTCGAGAGTGATCGT 211081 |||| | ||| || || || ||| ||||| | | ||| ||| |||||||| || Sbjct 6656821 CAGATCATGGATTTGACATTCTCAATGCTGTCATTTGGTCTCACTCTC-AGAGTGATGGT 6656763 Query 211082 CTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||| || || | ||| | ||||| | || ||| Sbjct 6656762 CTTGCCAGTCTGGGTCCTCACAAATATCTTCAT 6656730 Score = 86.0 bits (94), Expect = 1e-11 Identities = 143/207 (69%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 210908 AAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAG 210967 |||||| | |||||||| || |||||||| || | ||| | | |||||| ||||| Sbjct 6656707 AAGGTGGATGGTGGACTCCTTCTGGATGTTGTAGGTGGAGAGGTTGCCTCCATCCTCCAG 6656648 Query 210968 CTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGAT 211027 |||||| || ||||| || || || || |||||| | ||| ||||| || ||| Sbjct 6656647 CTGCTTAGTAGCAAAGATCAGACGCTGCAGGAAAGGAGGGATTCCCTCCTTATCGCAGAT 6656588 Query 211028 CTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCC 211087 ||| || || || || ||| | ||| ||| ||||| | ||||| ||||| || Sbjct 6656587 CTTGGCCTTGACATTCTCAATGCTTTCATTTGGTTCCACCTCCACGGTGATGGTCTTGCC 6656528 Query 211088 CGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| ||||| | |||||| Sbjct 6656527 AATGTAGGTCTTCACAAAGATCTGCAT 6656501 >seq14 Length=12328026 Score = 98.7 bits (108), Expect = 2e-15 Identities = 142/194 (73%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 139822 GGAAGAGGAGGACAATCTGCTCTGCGTTTTGAAAGACTTCGAAAGGAAAAGAGGCACAAC 139881 || ||||||||||| ||||| |||||||||| |||| ||| ||| ||||| |||||| Sbjct 3877777 GGCAGAGGAGGACAGTCTGCCCTGCGTTTTGCTCGACTGAGAATGGAGAAGAGACACAAC 3877718 Query 139882 TACTTGAGAAAAGTTGCAGAGAACGCAATACAG-TGTTT-TAT-CAAAGACAACAAGTGT 139938 || |||| ||||| || |||| || | ||| ||||| | | ||| || | |||| | Sbjct 3877717 TATGTGAGGAAAGTGGCTGAGACGGCTGTCCAGCTGTTTGTGTCCAACGATA--AAGT-T 3877661 Query 139939 TTTGTTTCTGGTATTGTTTTGGCAGGTTCCGCAGAGTTCAAGACAAAGCTCCTGGAATCT 139998 ||| | || || || ||||| ||||| || || |||||||| ||||| | ||| Sbjct 3877660 AATGTGGCCGGAATGGTCTTGGCTGGTTCTGCCGACTTCAAGACCGAGCTCAGCCAGTCT 3877601 Query 139999 GACTTTTTTGACCC 140012 ||| | ||||| || Sbjct 3877600 GACATGTTTGATCC 3877587 >seq20 Length=13411851 Score = 86.0 bits (94), Expect = 1e-11 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 211011 CCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCG 211070 |||||||| |||||||||||| || || |||||||| ||||| | || |||||| Sbjct 10779675 CCTTCCTTATCCTGGATCTTTGCCTTGACATTTTCGATCGTGTCGCTGGGCTCCACCTCG 10779734 Query 211071 AGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || ||||| ||||||||||| | ||||| || || | |||||| || Sbjct 10779735 AGGGTGATGGTCTTTCCCGTCAACGTCTTCACGAAGATCTGCATGTT 10779781 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159050489074775