Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Takifugu_20rubripes_20[refseq_20GCF_5F000180615.1_202011-10-13] 6,835 sequences; 391,484,715 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq1303 156 6e-33 seq21 104 3e-17 >seq1303 Length=194977 Score = 156 bits (172), Expect = 6e-33 Identities = 197/271 (73%), Gaps = 0/271 (0%) Strand=Plus/Plus Query 8315 ACGTTGCTACAGACTAGAGACTGAATAGTTGCGCTCTTGACGATCCCGAACCCCACGTCT 8374 || ||| | ||||| || ||| | || ||| | |||||||| |||| ||||| | | Sbjct 52541 ACATTGTTGCAGACGAGCATCTGCAGCGTGGCGGTGTTGACGATGTCGAAGCCCACTTTT 52600 Query 8375 CCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTCGCCATGAGGCCT 8434 || ||||| |||||||| |||||||| |||| ||||||||| ||| |||| | ||| Sbjct 52601 CCTCCGAATGTGCTGGGTTTCCAGTATTCCGGAGAGCAGATGGGGTTTCCCATTAAGCCC 52660 Query 8435 TTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATGGCGTTGGGACGG 8494 ||||| || | || ||||||| || | | | |||| || ||||||||||| | | | Sbjct 52661 TTGAGAGAATAGGGGGCCCCCATTTCCACCAGGGTCTCCCCAAAGATGGCGTTAGTCCTG 52720 Query 8495 GGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGTCTCCGTAAAGGGCC 8554 ||||| ||||||| | || ||||| ||||||||||| ||||||| ||||| | | Sbjct 52721 GGCTTCTCCACCAGCAGACCTGTGTAGAGCTCCACAGCATCGACGTGGCCGTACATTTCT 52780 Query 8555 CTGAGTTCGGCAGCGATCTCCTTTTCTCCTG 8585 || || || || || || || ||||||| Sbjct 52781 TCAAGCTCTGCTGCCATTTCTTTCTCTCCTG 52811 Score = 122 bits (134), Expect = 1e-22 Identities = 166/232 (72%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 9244 ATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGA 9303 || || || |||||||||||||| ||||| ||| ||||| || | | |||| Sbjct 54188 ATCAGCCGCGTGGTCTGGAACAGCCTTTCGTCGTCCCAGTCTGGGTGAACCTCCTTCAAC 54247 Query 9304 ACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGT 9363 || || ||||||| ||||||||||| |||||||||||||| |||||||| || || ||| Sbjct 54248 ACGTCACACACCCGGTTGTGTTCCCGAAGCCAGATAGTGGCATACATCATCAGGCCCGGT 54307 Query 9364 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGA 9423 ||||| || || ||||| ||||| || || || || ||||| | | ||| || Sbjct 54308 ACCAGACCGAAGGCCTCGTGACCCACCGCGAGGCGTTCAGACTCGGGAATGTTGGGGGGG 54367 Query 9424 TAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGT 9475 ||| ||||| || ||||| || || | || || |||| ||| |||| Sbjct 54368 TAGTGCATGTCAGCCCCCACGTCCTTCACTGTTGGCGGGTACACTTCCCCGT 54419 >seq21 Length=14900632 Score = 104 bits (114), Expect = 3e-17 Identities = 131/180 (73%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 8303 GGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGCTCTTGACGATCCCG 8362 ||||||| |||| |||| ||| || || | | ||| || | |||||||| | Sbjct 10788878 GGACACCACTTGGTGTTGAGACACACCAGTTTCCTTAAAGTGGCCGTTTTGACGATATTG 10788819 Query 8363 AACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTC 8422 || || ||||| || ||||||||||||||||||||| | |||||||||||| || Sbjct 10788818 AAGCCTGTCTCTCCCCCAAAGGTGCTGGGCTTCCAGTACTCTGGGGAGCAGATGGGATTT 10788759 Query 8423 GCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATG 8482 | | ||||||||||||||||| |||| |||| ||| | || ||||| || || ||| Sbjct 10788758 CCAAACAGGCCTTTGAGGGAGAAAGGAGAGCCCATCTCCACCATACTCTCTCCAAATATG 10788699 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716815551838400