Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetraodon_20nigroviridis_20[genbank_20GCA_5F000180735.1_202004-05- 14] 25,773 sequences; 342,403,326 total letters Query= NC_001416.1 Length=48502 Score E Sequences producing significant alignments: (Bits) Value seq23023 897 0.0 seq23388 205 3e-48 >seq23023 Length=988 Score = 897 bits (994), Expect = 0.0 Identities = 790/986 (80%), Gaps = 0/986 (0%) Strand=Plus/Minus Query 3253 GAAGGTGTGGCCATGCACGCCTTTAACGGTGAACTGTTCGTTCAGGCCACCTGGGATACC 3312 ||||||||| |||||||||| || | ||||||| | | | ||||| |||||||| | | Sbjct 987 GAAGGTGTGCCCATGCACGCGTTAANCGGTGAATTATGCACGCAGGCGACCTGGGACAGC 928 Query 3313 AGTTCGTCGCGGCTTTTCCGGACACAGTTCCGGATGGTCAGCCCGAAGCGCATCAGCAAC 3372 ||| |||| |||||||| || |||||| |||||||| ||||||||| ||||||| Sbjct 927 GATTCAACGCGTCTTTTCCGTACTCAGTTCAANATGGTCAGTCCGAAGCGCGTCAGCAAT 868 Query 3373 CCGAACAATACCGGCGACAGCCGGAACTGCCGTGCCGGTGTGCAGATTAATGACAGCGGT 3432 ||||| |||| ||| || | ||||||||| || ||||||||| | || ||||| |||||| Sbjct 867 CCGAATAATATCGGTGATACCCGGAACTGTCGCGCCGGTGTGAAAATAAATGATAGCGGT 808 Query 3433 GCGGCGCTGGGATATTACGTCAGCGAGGACGGGTATCCTGGCTGGATGCCGCAGAAATGG 3492 || ||||||||||||||||||||||| || || ||||| ||||||||| ||||||| ||| Sbjct 807 GCTGCGCTGGGATATTACGTCAGCGACGATGGTTATCCCGGCTGGATGGCGCAGAACTGG 748 Query 3493 ACATGGATACCCCGTGAGTTACCCGGCGGGCGCGCCTCGTTCATTCACGTTTTTGAACCC 3552 || | || || || || |||||||||| || | || || || || || || ||||| Sbjct 747 ACCTACATTCCTCGCGAACTACCCGGCGGTCGACCTTCATTTATCCATGTATTCGAACCG 688 Query 3553 GTGGAGGACGGGCAGACTCGCGGTGCAAATGTGTTTTACAGCGTGATGGAGCAGATGAAG 3612 ||||||| || ||||| || || || |||| ||||||||||||||||||||||||||| Sbjct 687 ATGGAGGATGGACAGACCCGTGGGGCCAATGCGTTTTACAGCGTGATGGAGCAGATGAAA 628 Query 3613 ATGCTCGACACGCTGCAGAACACGCAGCTGCAGAGCGCCATTGTGAAGGCGATGTATGCC 3672 |||||||| || ||||| || || ||||| |||||||| || |||||||| ||||||||| Sbjct 627 ATGCTCGATACCCTGCAAAATACCCAGCTCCAGAGCGCGATAGTGAAGGCTATGTATGCC 568 Query 3673 GCCACCATTGAGAGTGAGCTGGATACGCAGTCAGCGATGGATTTTATTCTGGGCGCGAAC 3732 || ||||| |||||||| |||||||| || || |||||||| |||||||| |||||| | Sbjct 567 GCTACCATCGAGAGTGAACTGGATACCCAATCGGCGATGGACTTTATTCTCGGCGCGGAT 508 Query 3733 AGTCAGGAGCAGCGGGAAAGGCTGACCGGCTGGATTGGTGAAATTGCCGCGTATTACGCC 3792 | | | ||||||| | | || || |||||| | |||||||| || | |||||| | Sbjct 507 AATAAAGAGCAGCAGAGCAAACTTACGGGCTGGCTCGGTGAAATGGCGTCCTATTACTCA 448 Query 3793 GCAGCGCCGGTCCGGCTGGGAGGCGCAAAAGTACCGCACCTGATGCCGGGTGACTCACTG 3852 || ||||| || || ||||| || |||| || || |||||| |||||||||| || || Sbjct 447 GCTGCGCCTGTTCGCCTGGGTGGGGCAAGGGTTCCACACCTGTTGCCGGGTGATTCTCTC 388 Query 3853 AACCTGCAGACGGCTCAGGATACGGATAACGGCTACTCCGTGTTTGAGCAGTCACTGCTG 3912 ||||| ||| |||| |||||||| |||||||||||||| ||||| ||||| |||||| Sbjct 387 AACCTTCAGTCGGCGCAGGATACCGATAACGGCTACTCGACTTTTGAACAGTCCCTGCTG 328 Query 3913 CGGTATATCGCTGCCGGGCTGGGTGTCTCGTATGAGCAGCTTTCCCGGAATTACGCCCAG 3972 || ||||| || || ||||| ||||| ||||||||||||||||| || || || | ||| Sbjct 327 CGTTATATTGCCGCTGGGCTTGGTGTGTCGTATGAGCAGCTTTCGCGAAACTATTCGCAG 268 Query 3973 ATGAGCTACTCCACGGCACGGGCCAGTGCGAACGAGTCGTGGGCGTACTTTATGGGGCGG 4032 ||||||||||| || ||||| || ||||| |||||||| |||||||||||||||||||| Sbjct 267 ATGAGCTACTCGACCGCACGCGCAAGTGCTAACGAGTCCTGGGCGTACTTTATGGGGCGT 208 Query 4033 CGAAAATTCGTCGCATCCCGTCAGGCGAGCCAGATGTTTCTGTGCTGGCTGGAAGAGGCC 4092 || || || || |||||||| ||||| | ||||||||||| |||||||| |||||||| Sbjct 207 CGCAAGTTTGTGGCATCCCGACAGGCCTGTCAGATGTTTCTTTGCTGGCTTGAAGAGGCG 148 Query 4093 ATCGTTCGCCGCGTGGTGACGTTACCTTCAAAAGCGCGCTTCAGTTTTCAGGAAGCCCGC 4152 || || ||||||||||| ||| | ||||| ||||| || |||||||| ||||| || | Sbjct 147 ATTGTCCGCCGCGTGGTCACGCTTCCTTCGAAAGCCCGGTTCAGTTTCCAGGAGGCGAGA 88 Query 4153 AGTGCCTGGGGGAACTGCGACTGGATAGGCTCCGGTCGTATGGCCATCGATGGTCTGAAA 4212 | ||||||||||| | ||||||| ||||| ||||| ||||| || || || |||||| Sbjct 87 ACAGCCTGGGGGAATGCCAACTGGATTGGCTCTGGTCGAATGGCAATTGACGGGCTGAAA 28 Query 4213 GAAGTTCAGGAAGCGGTGATGCTGAT 4238 || || ||||| || || ||||| || Sbjct 27 GAGGTACAGGAGGCCGTCATGCTCAT 2 >seq23388 Length=2009 Score = 205 bits (226), Expect = 3e-48 Identities = 164/191 (86%), Gaps = 5/191 (3%) Strand=Plus/Plus Query 9 ACCTCGCGGGTTTTCGCTATTTATGAAAATTTTCCGGTTTAAGGCGTTTCCGTTCTTCTT 68 ||||| | |||||| |||||||||| || ||| || |||||||| ||| ||| || Sbjct 283 ACCTCTCAGGTTTTTTG-ATTTATGAAAGTTG-CCGTTTAAAGGCGTT-CCGGTCTGCTG 339 Query 69 CGTCATAACTTAATGTTTTTATTTAAAATACCCTCTGAAAAGAAAGGAAACGACAGGTGC 128 |||||||||||||| ||||| ||| |||||||||||| | |||||||||||||||||||| Sbjct 340 CGTCATAACTTAATTTTTTTGTTTGAAATACCCTCTGGAGAGAAAGGAAACGACAGGTGC 399 Query 129 TGAAAGCGAGGCTTTTTGGCCTCTGTCGTTTCCTTTCTCTGTTTTTGTCCGTGGAATGAA 188 ||||||||||| | |||||||||||||||| |||| ||||| |||||||| ||||||| | Sbjct 400 TGAAAGCGAGG-TGTTTGGCCTCTGTCGTTGCCTTGCTCTGGTTTTGTCC-TGGAATGGA 457 Query 189 CAATGGAAGTC 199 ||||||||||| Sbjct 458 CAATGGAAGTC 468 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 155037335618464