Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetraodon_20nigroviridis_20[genbank_20GCA_5F000180735.1_202004-05- 14] 25,773 sequences; 342,403,326 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq14557 113 4e-20 seq18908 98.7 8e-16 >seq14557 Length=1650391 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 ||||||||||| || ||||| ||||| | |||||| || | || |||||||| ||||| Sbjct 90856 GTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCA 90915 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 ||| | || || |||||||| || ||| | |||||||||||| |||||| ||| Sbjct 90916 GCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTC 90975 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | | | || || | ||||||| || | ||| ||||| ||||| || | || Sbjct 90976 ACGTTCTCAATGGTGTCGCTGGGCTCCACCTCAAGGGTGATGGTTTTGCCAGTGAGGGTC 91035 Query 21159 TTGACAAATATTTGCAT 21175 ||||| || || ||||| Sbjct 91036 TTGACGAAGATCTGCAT 91052 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 |||||||| || || ||||| ||||| | |||||| || | || || ||||| ||||| Sbjct 91084 GTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCAAGCTGCTTGCCA 91143 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 ||| | || || |||||||| || ||| | |||||||||||| |||||| ||| Sbjct 91144 GCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTC 91203 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | | | | |||| ||||||| || | ||| ||||| ||||| || | || Sbjct 91204 ACGTTCTCAATGTTGTCACTGGGCTCCACCTCGAGGGTGATGGTTTTGCCAGTGAGGGTC 91263 Query 21159 TTGACAAATATTTGCAT 21175 ||||| || || ||||| Sbjct 91264 TTGACGAAGATCTGCAT 91280 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 |||||||| || || ||||| ||||| | |||||| || | || || ||||| ||||| Sbjct 91312 GTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCAAGCTGCTTGCCA 91371 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 ||| | || || |||||||| || ||| | |||||||||||| |||||| ||| Sbjct 91372 GCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTC 91431 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | | | || || | ||||||| || | || ||||| ||||| || | || Sbjct 91432 ACGTTCTCAATGGTGTCGCTGGGCTCCACCTCAAGAGTGATGGTTTTGCCAGTGAGGGTC 91491 Query 21159 TTGACAAATATTTGCAT 21175 |||||||| || ||||| Sbjct 91492 TTGACAAAGATCTGCAT 91508 >seq18908 Length=594 Score = 98.7 bits (108), Expect = 8e-16 Identities = 145/204 (71%), Gaps = 1/204 (0%) Strand=Plus/Minus Query 20973 TGCAAAGTGG-ACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTG 21031 |||| |||| |||| || || ||||| ||||| | |||||| || | || || ||||| Sbjct 578 TGCAGGGTGGCACTCTTTCTGCATGTTGTAGTCGGACAGGGTGCGGCCATCTTCAAGCTG 519 Query 21032 TTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTT 21091 ||||| ||| | || || |||||||| || ||| | |||||||||||| |||||| Sbjct 518 CTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTGGATCTT 459 Query 21092 TTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGT 21151 ||||| | | | || || | ||||||| || | || ||||| ||||| || Sbjct 458 GGCCTTCACGTTCTCAATGGTGTCGCTGGGCTCCACCTCAAGAGTGATGGTTTTGCCAGT 399 Query 21152 TAACGTTTTGACAAATATTTGCAT 21175 | || |||||||| || ||||| Sbjct 398 GAGGGTCTTGACAAAGATCTGCAT 375 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422126564822468