Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetraodon_20nigroviridis_20[genbank_20GCA_5F000180735.1_202004-05- 14] 25,773 sequences; 342,403,326 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq14557 152 5e-32 seq7053 132 5e-26 seq3173 132 5e-26 seq18908 116 4e-21 seq14196 109 6e-19 >seq14557 Length=1650391 Score = 152 bits (168), Expect = 5e-32 Identities = 172/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||| ||||||||||||||| | || || || ||| | Sbjct 91052 ATGCAGATCTTCGTCAAGACCCTCACTGGCAAAACCATCACCCTTGAGGTGGAGCCCAGC 90993 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| | |||| || || | ||||| || ||||| ||| | || || Sbjct 90992 GACACCATTGAGAACG-TGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTGATCA 90934 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | || |||| || ||||| |||||||| || | |||||||| ||||||||| Sbjct 90933 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAA 90874 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||||| |||| || || || || |||| |||||||| || Sbjct 90873 CATCCAGAAGGAGTCCACCCTCCACCTTGTCCTGCGATTGAGGGGTGG 90826 Score = 140 bits (154), Expect = 3e-28 Identities = 170/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||| ||||||||||||||| |||| || || ||| Sbjct 91280 ATGCAGATCTTCGTCAAGACCCTCACTGGCAAAACCATCACCCTCGAGGTGGAGCCCAGT 91221 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| | |||| || || | ||||| || ||||| ||| | || || Sbjct 91220 GACAACATTGAGAACG-TGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTGATCA 91162 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | || |||| || ||||| ||||| || || | |||||||| ||||||||| Sbjct 91161 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTTGAAGATGGCCGCACCCTGTCCGACTACAA 91102 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||| ||| |||| || || || || |||| ||||||| ||| Sbjct 91101 CATCCAGAAAGAGTCCACCCTCCACCTTGTCCTGCGTCTGAGGGGAGGC 91053 Score = 131 bits (144), Expect = 2e-25 Identities = 168/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || ||||| |||||||||||||| | || || || ||| | Sbjct 91508 ATGCAGATCTTTGTCAAGACCCTCACTGGCAAAACCATCACTCTTGAGGTGGAGCCCAGC 91449 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| | |||| || || | ||||| || ||||| ||| | || || Sbjct 91448 GACACCATTGAGAACG-TGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTGATCA 91390 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | || |||| || ||||| ||||| || || | |||||||| ||||||||| Sbjct 91389 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTTGAAGATGGCCGCACCCTGTCCGACTACAA 91330 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||| ||| |||| || || || || |||| ||||||| ||| Sbjct 91329 CATCCAGAAAGAGTCCACCCTCCACCTTGTCCTGCGTCTGAGGGGAGGC 91281 >seq7053 Length=111041 Score = 132 bits (146), Expect = 5e-26 Identities = 111/136 (82%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 117032 GGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCC 117091 || |||||| |||||||||| || ||||| ||||| ||||||| |||||| || ||| Sbjct 46834 GGAGAGCGCGTGGTGGCCTTTGCCGCCGTGGAGGGAATCTTCTTCTCGGGCTCCTTTGCC 46893 Query 117092 GCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTC 117151 ||||| || ||||| ||||| || ||||| |||||||||||||| ||| ||||||||| Sbjct 46894 GCCATCTTCTGGCTGAAGAAGCGAGGCCTGATGCCCGGCCTGACCTTCTCCAACGAGCTG 46953 Query 117152 ATCTCCAGGGACGAGG 117167 ||| ||| ||||||| Sbjct 46954 ATCAGCAGAGACGAGG 46969 Score = 132 bits (146), Expect = 5e-26 Identities = 111/136 (82%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 117032 GGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCC 117091 || |||||| |||||||||| || ||||| ||||| ||||||| |||||| || ||| Sbjct 51777 GGAGAGCGCGTGGTGGCCTTTGCCGCCGTGGAGGGAATCTTCTTCTCGGGCTCCTTTGCC 51718 Query 117092 GCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTC 117151 ||||| || ||||| ||||| || ||||| |||||||||||||| ||| ||||||||| Sbjct 51717 GCCATCTTCTGGCTGAAGAAGCGAGGCCTGATGCCCGGCCTGACCTTCTCCAACGAGCTG 51658 Query 117152 ATCTCCAGGGACGAGG 117167 ||| ||| ||||||| Sbjct 51657 ATCAGCAGAGACGAGG 51642 Score = 132 bits (146), Expect = 5e-26 Identities = 111/136 (82%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 117032 GGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCC 117091 || |||||| |||||||||| || ||||| ||||| ||||||| |||||| || ||| Sbjct 60698 GGAGAGCGCGTGGTGGCCTTTGCCGCCGTGGAGGGAATCTTCTTCTCGGGCTCCTTTGCC 60639 Query 117092 GCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTC 117151 ||||| || ||||| ||||| || ||||| |||||||||||||| ||| ||||||||| Sbjct 60638 GCCATCTTCTGGCTGAAGAAGCGAGGCCTGATGCCCGGCCTGACCTTCTCCAACGAGCTG 60579 Query 117152 ATCTCCAGGGACGAGG 117167 ||| ||| ||||||| Sbjct 60578 ATCAGCAGAGACGAGG 60563 Score = 114 bits (126), Expect = 1e-20 Identities = 100/122 (82%), Gaps = 2/122 (2%) Strand=Plus/Plus Query 116685 AGGTGGACCTGTCCAAGGACACG-AGCGACTGGGAGCGCTTGAACGACAACGAGCGCCAT 116743 |||||||||||||||||||| | ||| |||||||| |||| ||| ||||| | Sbjct 46216 AGGTGGACCTGTCCAAGGACCTGCAGC-ACTGGGAGTCTCTGAAGGACGACGAGAGGTTC 46274 Query 116744 TTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTG 116803 |||||| |||||| ||||||| ||||||||||||||||| |||||||||||||| ||| Sbjct 46275 TTCATCTCCCACGTGTTGGCCTTCTTCGCCGCCAGCGACGGGATCGTCAACGAGAACCTG 46334 Query 116804 GT 116805 || Sbjct 46335 GT 46336 Score = 114 bits (126), Expect = 1e-20 Identities = 100/122 (82%), Gaps = 2/122 (2%) Strand=Plus/Minus Query 116685 AGGTGGACCTGTCCAAGGACACG-AGCGACTGGGAGCGCTTGAACGACAACGAGCGCCAT 116743 |||||||||||||||||||| | ||| |||||||| |||| ||| ||||| | Sbjct 61323 AGGTGGACCTGTCCAAGGACCTGCAGC-ACTGGGAGTCTCTGAAGGACGACGAGAGGTTC 61265 Query 116744 TTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTG 116803 |||||| |||||| ||||||| ||||||||||||||||| |||||||||||||| ||| Sbjct 61264 TTCATCTCCCACGTGTTGGCCTTCTTCGCCGCCAGCGACGGGATCGTCAACGAGAACCTG 61205 Query 116804 GT 116805 || Sbjct 61204 GT 61203 Score = 113 bits (124), Expect = 5e-20 Identities = 94/115 (82%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 116803 GGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCA 116862 ||| ||||||||| | ||||||||||||||| | ||||| |||| |||||||| || || Sbjct 46411 GGTGGAGCGTTTCACCCAGGAGGTGCAGGTGACGGAGGCCAGGTGTTTCTACGGTTTCCA 46470 Query 116863 GATCGCCATGGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTAC 116917 |||||||||||||||| | |||||||| ||||| ||| |||||||| ||| Sbjct 46471 GATCGCCATGGAGAACATCCACTCGGAGATGTACAGCCTCCTGATCGACACCTAC 46525 Score = 113 bits (124), Expect = 5e-20 Identities = 94/115 (82%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 116803 GGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCA 116862 ||| ||||||||| | ||||||||||||||| | ||||| |||| |||||||| || || Sbjct 61128 GGTGGAGCGTTTCACCCAGGAGGTGCAGGTGACGGAGGCCAGGTGTTTCTACGGTTTCCA 61069 Query 116863 GATCGCCATGGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTAC 116917 |||||||||||||||| | |||||||| ||||| ||| |||||||| ||| Sbjct 61068 GATCGCCATGGAGAACATCCACTCGGAGATGTACAGCCTCCTGATCGACACCTAC 61014 >seq3173 Length=1876 Score = 132 bits (146), Expect = 5e-26 Identities = 111/136 (82%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 117032 GGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCC 117091 || |||||| |||||||||| || ||||| ||||| ||||||| |||||| || ||| Sbjct 483 GGAGAGCGCGTGGTGGCCTTTGCCGCCGTGGAGGGAATCTTCTTCTCGGGCTCCTTTGCC 424 Query 117092 GCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTC 117151 ||||| || ||||| ||||| || ||||| |||||||||||||| ||| ||||||||| Sbjct 423 GCCATCTTCTGGCTGAAGAAGCGAGGCCTGATGCCCGGCCTGACCTTCTCCAACGAGCTG 364 Query 117152 ATCTCCAGGGACGAGG 117167 ||| ||| ||||||| Sbjct 363 ATCAGCAGAGACGAGG 348 Score = 114 bits (126), Expect = 1e-20 Identities = 100/122 (82%), Gaps = 2/122 (2%) Strand=Plus/Minus Query 116685 AGGTGGACCTGTCCAAGGACACG-AGCGACTGGGAGCGCTTGAACGACAACGAGCGCCAT 116743 |||||||||||||||||||| | ||| |||||||| |||| ||| ||||| | Sbjct 1089 AGGTGGACCTGTCCAAGGACCTGCAGC-ACTGGGAGTCTCTGAAGGACGACGAGAGGTTC 1031 Query 116744 TTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTG 116803 |||||| |||||| ||||||| ||||||||||||||||| |||||||||||||| ||| Sbjct 1030 TTCATCTCCCACGTGTTGGCCTTCTTCGCCGCCAGCGACGGGATCGTCAACGAGAACCTG 971 Query 116804 GT 116805 || Sbjct 970 GT 969 Score = 113 bits (124), Expect = 5e-20 Identities = 94/115 (82%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 116803 GGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCA 116862 ||| ||||||||| | ||||||||||||||| | ||||| |||| |||||||| || || Sbjct 894 GGTGGAGCGTTTCACCCAGGAGGTGCAGGTGACGGAGGCCAGGTGTTTCTACGGTTTCCA 835 Query 116863 GATCGCCATGGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTAC 116917 |||||||||||||||| | |||||||| ||||| ||| |||||||| ||| Sbjct 834 GATCGCCATGGAGAACATCCACTCGGAGATGTACAGCCTCCTGATCGACACCTAC 780 >seq18908 Length=594 Score = 116 bits (128), Expect = 4e-21 Identities = 153/208 (74%), Gaps = 3/208 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || ||||| |||||||||||||| | || || || ||| | Sbjct 375 ATGCAGATCTTTGTCAAGACCCTCACTGGCAAAACCATCACTCTTGAGGTGGAGCCCAGC 434 Query 40750 GACAGC-GTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | || |||| | |||| || || | ||||| || ||||| ||| | || || Sbjct 435 GACACCATTGAGAACG-TGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTGATCA 493 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | || |||| || ||||| ||||| || || | |||||||| ||||||||| Sbjct 494 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTTGAAGATGGCCGCACCCTGTCCGACTACAA 553 Query 40869 CATCCAGAAGGAG-GCCACGCTGCATCT 40895 ||| ||||| ||| ||||| ||||| || Sbjct 554 CATGCAGAAAGAGTGCCACCCTGCACCT 581 >seq14196 Length=26487 Score = 109 bits (120), Expect = 6e-19 Identities = 108/138 (78%), Gaps = 4/138 (3%) Strand=Plus/Plus Query 117032 GGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCC 117091 || ||||| |||||||| || ||||| || |||||| ||||||| || ||| ||||| Sbjct 19398 GGGGAGCGGCTGGTGGCATTTGCGGCGGTGGAGGGCATCTTCTTCTCCGGCTCCTTCGCT 19457 Query 117092 GCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTT--TCAGCAACGAGC 117149 |||| | ||||| |||||| | || |||||||| |||||||| | ||| ||||||| Sbjct 19458 TCCATCTACTGGCTGAAGAAAAGAGGACTCATGCCAGGCCTGACGTATTCA--AACGAGC 19515 Query 117150 TCATCTCCAGGGACGAGG 117167 | ||| ||||||||||| Sbjct 19516 TGATCAGCAGGGACGAGG 19533 Score = 93.3 bits (102), Expect = 4e-14 Identities = 93/121 (77%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 116685 AGGTGGACCTGTCCAAGGACACGAGCGACTGGGAGCGCTTGAACGACAACGAGCGCCATT 116744 |||||||| ||||||| ||| | | ||||||| | || || | ||| || | Sbjct 18641 AGGTGGACTTGTCCAAAGACTTGGCCCACTGGGACAGTTTAAAACCTGAGGAGAAACACT 18700 Query 116745 TCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGG 116804 ||||| ||||| ||||||| |||||||||||||||||||||||||||||||| |||| Sbjct 18701 TCATCTCACACGTCTTGGCCTTCTTCGCCGCCAGCGACGGCATCGTCAACGAGAACCTGG 18760 Query 116805 T 116805 | Sbjct 18761 T 18761 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515053215694480