Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetraodon_20nigroviridis_20[genbank_20GCA_5F000180735.1_202004-05- 14] 25,773 sequences; 342,403,326 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq14537 325 5e-84 seq14703 102 1e-16 seq7053 96.9 4e-15 seq3173 96.9 4e-15 seq14196 84.2 3e-11 >seq14537 Length=2063196 Score = 325 bits (360), Expect = 5e-84 Identities = 1034/1597 (65%), Gaps = 7/1597 (0%) Strand=Plus/Plus Query 62664 CAACTCGCCTCTAATGCACCGTAATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGT 62723 || || ||||| | || |||| || ||||| || ||||||| | || || || Sbjct 886013 CAGCTGGCCTCCAGGGCCGCGTAGTAGATGGTCTCGAAGATCTGGGTGTTCAGCAGCTGA 886072 Query 62724 GCTTCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACA 62783 || || ||||| || || || || | ||| || || |||||||| | || || || Sbjct 886073 GCCTCGGGGCTCTCGAACGGGTAGCGCATGAGGATGAAGGCGTCCGCCAGCCCCTGGACG 886132 Query 62784 CCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAA 62843 || || ||||| || | || | | | || ||| || || || || | || || || Sbjct 886133 CCGATCCCGATGGGCCGGTGGCGCCTGTTGGAGCGCTCGGCCTCGGGCACCGGGTAGTAG 886192 Query 62844 TTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTG 62903 || || || || || || || || |||||||| | || ||| ||| | ||| ||| Sbjct 886193 TTGATGTCGATGATCTTGTTCAGGTTTCTGACCACCACCTTGGTCACGGCGGCCAGCTTG 886252 Query 62904 AGAAAATCAAATCGCCCATCTA---TTACAAACATGTTCAATGCAACAGATGCCAGATTA 62960 | || || || | || | || ||||||| | || | || ||||| || Sbjct 886253 TGGAAGTCGAAGGTGCACTCGGGGGTGACGTACATGTTGAGCGCGATGGAGGCCAGGTTG 886312 Query 62961 CACACGGCTACCTCATTAGCATCCGCA-TATTGTATTATCTCAGTGCAAAGATTACTACA 63019 || ||||| ||||| | || | | |||| | ||||| ||||| || || || | Sbjct 886313 CAGACGGCCACCTCGTC-GCTGCTGGTGTATTCCACGATCTCCGTGCACAGGTTGCTGCT 886371 Query 63020 CTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAAT 63079 ||||| || || | || || || || ||||| |||| || || || || || || || Sbjct 886372 TTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTAGAGCAT 886431 Query 63080 GAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTT 63139 | | || || || ||||| |||| || || || || || | ||| || | ||||| Sbjct 886432 GTACGGGGTGCCGGTTTCCGTCTGGGACTCGATGATGGCGTGCCACACCTGCTGGGCCTT 886491 Query 63140 TATTATAGATTTGTATCTCCTTTCTCTTTCGTATAGAGTATACAATCGTTCGAACTCGTC 63199 | | ||| | | || | ||||| || || | || ||||| || Sbjct 886492 CACCACGCGCTTGACGCGGCCCTCCTTCTCGTAGGAGGTGTAGAGCTTCTCAAACTCCTC 886551 Query 63200 TCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACACATCAACGACCACTCTCCGTC 63259 ||||| | || ||| | || ||||| ||||||||||||| ||||| || || Sbjct 886552 CCCCCAGCACTCGTTCAAGCCGGGGCATTCGTCCGGACACATCAGAGACCAGTCCTGGTT 886611 Query 63260 ATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGT 63319 || ||| | ||||| || | || || ||||| || || || || || || | Sbjct 886612 GCTCTCCACCCTCTTCATGAACAAGTCGGGGATCCAGAGCGCGTAGAACAGGTCCCTGGC 886671 Query 63320 TCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATG 63379 ||| || ||||| || || || ||||| || || || ||||| | | | || | || Sbjct 886672 TCTCTGCTCCTCCTTCCCCGTGTTCTTCTTCAGCTCCAGGAAGTCAAAGACGTCGAAGTG 886731 Query 63380 CCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTA 63439 ||| || |||| ||| ||||| | | || ||||| ||||| |||||||| || | ||| Sbjct 886732 CCAGGGCTCCAGGTACATGGCGAAGGCGCCGGGCCGCTTGTTCCCTCCCTGGTCCACGTA 886791 Query 63440 TCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGT 63499 | || ||||| || |||||||||| ||| || | | ||||| || || ||||| Sbjct 886792 GCGTGCCGTGTTGTTGTAAACTCTCAGCATGGGCACCAGGCCGTTGGAGTGGCCGTTGGT 886851 Query 63500 ACCGGAGATATAGCCTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGC 63559 |||| ||| || | || |||| || || || | | | || || ||||| || Sbjct 886852 GCCGGCGATGTAACTCCCCGTGGCTCGGATGCAGCTGACGGCCACGCCGATGCCCCCGGC 886911 Query 63560 CATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATC 63619 | || ||||| | ||||| | || | |||||| || ||||| || ||||| || || Sbjct 886912 CGACTTGGAGATGAGCGCGCACTGCTTGAGCGTGTCGTAAATGCCCTCGATGCTGTCGTC 886971 Query 63620 GATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAA 63679 ||||| || || || ||||| |||| || | || | || || || || || | Sbjct 886972 CTTCATGGCCAGCAGGAAGCAGCTGGACAGCTGCGGCCGGTTGGTGCCTGCGTTGAAGAG 887031 Query 63680 GGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGA 63739 || || || ||||| || ||||| || || || || || ||||| || || || || | Sbjct 887032 CGTGGGCGAGGCGTGGGTGAACCACTTCTCCGACAGCAGGTTGTAGGTTTCGATGGCCGC 887091 Query 63740 GTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTC 63799 ||| || || ||| || || || || | ||| | ||| | ||||||||| || | || Sbjct 887092 GTCGATGTCGTTTTGGTGGATGCCGACGGAGACCCTCATCAGCATGTGCTGCGGCCGCTC 887151 Query 63800 AACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATA 63859 | | |||| ||| || |||| || |||||| |||| || || || || || | Sbjct 887152 GGCCACTTTGCCGTTGATCTTCAGCAGGTAGGAGCGCTCCAGGGTCTTGAAGCCGAAGAA 887211 Query 63860 GTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGCTTATCCTTATATTTGTT 63919 |||||| ||||| || || ||||| || || |||| || || || | | | Sbjct 887212 GTTGTACGAAAAATCGCGGTCGTAGATGATGGCCGAGTTCAGGCGGTCTCTGTTCTGCAG 887271 Query 63920 AACTATATCCATGGTAATACTT-GAAATAATCGGAGAATGTTTCCCATTTTTAGGATTAA 63978 || || |||| || | ||| || | || || || || || ||| || || | Sbjct 887272 GACGATGTCCAGCGT-CTCCTTGGAGACCATGGGGGAGTGGCACCTGTTTAAGGGGTTGA 887330 Query 63979 CATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGAT 64038 | |||||| | | ||||||||||| || || || | || || || || ||||| || | Sbjct 887331 CGTAGTTGTACAGGTCCTCCATCACCTCGCTGAACACCTTCTTGGTCTCTTTGTGCAGGT 887390 Query 64039 TTGATATGGCTATTCTGGCGGCTAGAATGGCATAATCCGGATGTTGTGTAGTACAAGTGG 64098 | || | ||| || | || || || ||||| || || || || | || || |||| Sbjct 887391 TGGAGACGGCAATCCGCGCAGCCAGGATGGCGTAGTCGGGGTGCTTGGTGGTCAGGGTGG 887450 Query 64099 CTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTT 64158 | | || || || ||||| ||||||| || ||||| || || || | || | || | Sbjct 887451 CGGAGATCTCCGCCGCCAGCGTGTCCAGCTCCACCGTGGTGACCCCGCTGTACAGACCCT 887510 Query 64159 GAATAACCTTCATAGCTATTTTAATAGGATCTATATGATCCGTGTTTAAGCCATAGCACA 64218 | || |||||||| | || | | || || | | || | ||| | ||| ||||||| Sbjct 887511 GGATCACCTTCATGGTGATCTGAGCCGGGTCCACAAAGTCAGCGTTCAGGCCGTAGCACA 887570 Query 64219 ATTTTCTAATACGAGACGTGATTTTATCAAACATGAC 64255 || || || || |||||||| || |||||||| Sbjct 887571 GCTTCTGGATGCGGGAGGTGATTTTGTCGAACATGAC 887607 Score = 102 bits (112), Expect = 1e-16 Identities = 125/171 (73%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 62113 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 62172 |||| ||||| || ||||| || || |||||| || | || ||||| || ||||| | Sbjct 885373 TCCAGCCGTAGAAGTGCATGCTGGTCAGTTTGCCGTAGTTGGGCTCTGCGATGTGGATGT 885432 Query 62173 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 62232 ||||||| || || || ||||||||||| || | ||| || ||||| || |||| ||||| Sbjct 885433 TCATAGACTGGCTCTGGTCGATGAAGGCGCCGCGGTCGGCCGCCATCTTGATGACCGTCT 885492 Query 62233 TTTGTGCAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 62283 | || | || ||||| | || || || | |||| | ||| | ||||| Sbjct 885493 TCTGGGAGATCTCCCACACCGTCTTGTACAGCTGCTTCACATCGTTTGGAA 885543 >seq14703 Length=1421099 Score = 102 bits (112), Expect = 1e-16 Identities = 124/169 (73%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 62113 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 62172 |||| || ||||| ||||| || || |||||| || | || ||||| || ||||| | Sbjct 454816 TCCAGCCATAAAAGTGCATGCTGGTCAGTTTGCCGTAGTTGGGCTCTGCGATGTGGATGT 454757 Query 62173 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 62232 | | || || || |||||||||||||| || | |||||| ||||| || | || |||| Sbjct 454756 TGAGCGACTGGCTCTGATCGATGAAGGCGCCGCGGTCTGCTGCCATCTTGAGGACGGTCT 454697 Query 62233 TTTGTGCAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGG 62281 | || | |||||||| | ||||||||| | |||| | ||| || || Sbjct 454696 TCTGGGAGATTTCCCACACAGTTTTATACAGCTGCTTCAGATCGTCAGG 454648 Score = 86.0 bits (94), Expect = 8e-12 Identities = 107/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 63266 CACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATG 63325 |||||||||||||||||| || || ||||| | ||| | || || || || | || || Sbjct 453013 CACTCGTTTCATAAAGAGGTCTGGTATCCACAAAGCAAAGAACAGGTCCCTGGCCCTCTG 452954 Query 63326 TTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 63385 ||||| || || || ||||| || | || ||||| | | || ||| ||||||||||| Sbjct 452953 CTCCTCTTTGCCCGTGTTCTTCTTCAACTCCAGGAAGTCAAAAACATCGGAATGCCACGG 452894 Query 63386 TTCCAAGTATATGGCCATAACTCCAGG 63412 |||| ||| | || | ||||||| Sbjct 452893 CTCCAGGTACACAGCGAAGGCTCCAGG 452867 >seq7053 Length=111041 Score = 96.9 bits (106), Expect = 4e-15 Identities = 94/121 (78%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||||||||| || || | ||||| || || || || |||||||| ||||| ||||| | Sbjct 46969 CCTCGTCTCTGCTGATCAGCTCGTTGGAGAAGGTCAGGCCGGGCATCAGGCCTCGCTTCT 46910 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | ||||| || |||| || || || || || ||||||||||| || || || ||||||| Sbjct 46909 TCAGCCAGAAGATGGCGGCAAAGGAGCCCGAGAAGAAGATTCCCTCCACGGCGGCAAAGG 46850 Query 33724 C 33724 | Sbjct 46849 C 46849 Score = 96.9 bits (106), Expect = 4e-15 Identities = 94/121 (78%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||||||||| || || | ||||| || || || || |||||||| ||||| ||||| | Sbjct 51642 CCTCGTCTCTGCTGATCAGCTCGTTGGAGAAGGTCAGGCCGGGCATCAGGCCTCGCTTCT 51701 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | ||||| || |||| || || || || || ||||||||||| || || || ||||||| Sbjct 51702 TCAGCCAGAAGATGGCGGCAAAGGAGCCCGAGAAGAAGATTCCCTCCACGGCGGCAAAGG 51761 Query 33724 C 33724 | Sbjct 51762 C 51762 Score = 96.9 bits (106), Expect = 4e-15 Identities = 94/121 (78%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||||||||| || || | ||||| || || || || |||||||| ||||| ||||| | Sbjct 60563 CCTCGTCTCTGCTGATCAGCTCGTTGGAGAAGGTCAGGCCGGGCATCAGGCCTCGCTTCT 60622 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | ||||| || |||| || || || || || ||||||||||| || || || ||||||| Sbjct 60623 TCAGCCAGAAGATGGCGGCAAAGGAGCCCGAGAAGAAGATTCCCTCCACGGCGGCAAAGG 60682 Query 33724 C 33724 | Sbjct 60683 C 60683 Score = 82.4 bits (90), Expect = 1e-10 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 33852 TAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAAT 33911 || || ||||||| || || ||||| ||||| || ||||| || ||||| ||||| || Sbjct 46524 TAGGTGTCGATCAGGAGGCTGTACATCTCCGAGTGGATGTTCTCCATGGCGATCTGGAAA 46465 Query 33912 CCGTAGAAACATCTAGCCTCGGTAATCTGCACTTC 33946 ||||||||||| || ||||| || | |||||| || Sbjct 46464 CCGTAGAAACACCTGGCCTCCGTCACCTGCACCTC 46430 Score = 82.4 bits (90), Expect = 1e-10 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 33852 TAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAAT 33911 || || ||||||| || || ||||| ||||| || ||||| || ||||| ||||| || Sbjct 61015 TAGGTGTCGATCAGGAGGCTGTACATCTCCGAGTGGATGTTCTCCATGGCGATCTGGAAA 61074 Query 33912 CCGTAGAAACATCTAGCCTCGGTAATCTGCACTTC 33946 ||||||||||| || ||||| || | |||||| || Sbjct 61075 CCGTAGAAACACCTGGCCTCCGTCACCTGCACCTC 61109 >seq3173 Length=1876 Score = 96.9 bits (106), Expect = 4e-15 Identities = 94/121 (78%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||||||||| || || | ||||| || || || || |||||||| ||||| ||||| | Sbjct 348 CCTCGTCTCTGCTGATCAGCTCGTTGGAGAAGGTCAGGCCGGGCATCAGGCCTCGCTTCT 407 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | ||||| || |||| || || || || || ||||||||||| || || || ||||||| Sbjct 408 TCAGCCAGAAGATGGCGGCAAAGGAGCCCGAGAAGAAGATTCCCTCCACGGCGGCAAAGG 467 Query 33724 C 33724 | Sbjct 468 C 468 Score = 82.4 bits (90), Expect = 1e-10 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 33852 TAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAAT 33911 || || ||||||| || || ||||| ||||| || ||||| || ||||| ||||| || Sbjct 781 TAGGTGTCGATCAGGAGGCTGTACATCTCCGAGTGGATGTTCTCCATGGCGATCTGGAAA 840 Query 33912 CCGTAGAAACATCTAGCCTCGGTAATCTGCACTTC 33946 ||||||||||| || ||||| || | |||||| || Sbjct 841 CCGTAGAAACACCTGGCCTCCGTCACCTGCACCTC 875 >seq14196 Length=26487 Score = 84.2 bits (92), Expect = 3e-11 Identities = 91/121 (75%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 ||||||| || || || | ||||| ||| |||| || || ||||| || || | || | Sbjct 19533 CCTCGTCCCTGCTGATCAGCTCGTTTGAATACGTCAGGCCTGGCATGAGTCCTCTTTTCT 19474 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | ||||| | ||||||||||| || ||||| |||||||| || || || || ||||| | Sbjct 19473 TCAGCCAGTAGATGGAAGCGAAGGAGCCGGAGAAGAAGATGCCCTCCACCGCCGCAAATG 19414 Query 33724 C 33724 | Sbjct 19413 C 19413 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629614696387440