Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetraodon_20nigroviridis_20[genbank_20GCA_5F000180735.1_202004-05- 14] 25,773 sequences; 342,403,326 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq7053 89.7 5e-13 seq3173 89.7 5e-13 >seq7053 Length=111041 Score = 89.7 bits (98), Expect = 5e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 11654 TCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttttt 11713 |||||||| || || || || || || || || | |||||||||| ||||| || || Sbjct 46967 TCGTCTCTGCTGATCAGCTCGTTGGAGAAGGTCAGGCCGGGCATCAGGCCTCGCTTCTTC 46908 Query 11714 ATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCT 11773 | ||| || || || ||||| || || || ||||| ||||||||||| || ||||| || Sbjct 46907 AGCCAGAAGATGGCGGCAAAGGAGCCCGAGAAGAAGATTCCCTCCACGGCGGCAAAGGCC 46848 Query 11774 ACTACTCTTTCTCC 11787 || || | ||||| Sbjct 46847 ACCACGCGCTCTCC 46834 Score = 89.7 bits (98), Expect = 5e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 11654 TCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttttt 11713 |||||||| || || || || || || || || | |||||||||| ||||| || || Sbjct 51644 TCGTCTCTGCTGATCAGCTCGTTGGAGAAGGTCAGGCCGGGCATCAGGCCTCGCTTCTTC 51703 Query 11714 ATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCT 11773 | ||| || || || ||||| || || || ||||| ||||||||||| || ||||| || Sbjct 51704 AGCCAGAAGATGGCGGCAAAGGAGCCCGAGAAGAAGATTCCCTCCACGGCGGCAAAGGCC 51763 Query 11774 ACTACTCTTTCTCC 11787 || || | ||||| Sbjct 51764 ACCACGCGCTCTCC 51777 Score = 89.7 bits (98), Expect = 5e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 11654 TCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttttt 11713 |||||||| || || || || || || || || | |||||||||| ||||| || || Sbjct 60565 TCGTCTCTGCTGATCAGCTCGTTGGAGAAGGTCAGGCCGGGCATCAGGCCTCGCTTCTTC 60624 Query 11714 ATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCT 11773 | ||| || || || ||||| || || || ||||| ||||||||||| || ||||| || Sbjct 60625 AGCCAGAAGATGGCGGCAAAGGAGCCCGAGAAGAAGATTCCCTCCACGGCGGCAAAGGCC 60684 Query 11774 ACTACTCTTTCTCC 11787 || || | ||||| Sbjct 60685 ACCACGCGCTCTCC 60698 >seq3173 Length=1876 Score = 89.7 bits (98), Expect = 5e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 11654 TCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttttt 11713 |||||||| || || || || || || || || | |||||||||| ||||| || || Sbjct 350 TCGTCTCTGCTGATCAGCTCGTTGGAGAAGGTCAGGCCGGGCATCAGGCCTCGCTTCTTC 409 Query 11714 ATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCT 11773 | ||| || || || ||||| || || || ||||| ||||||||||| || ||||| || Sbjct 410 AGCCAGAAGATGGCGGCAAAGGAGCCCGAGAAGAAGATTCCCTCCACGGCGGCAAAGGCC 469 Query 11774 ACTACTCTTTCTCC 11787 || || | ||||| Sbjct 470 ACCACGCGCTCTCC 483 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468373858879120