Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetraodon_20nigroviridis_20[genbank_20GCA_5F000180735.1_202004-05- 14] 25,773 sequences; 342,403,326 total letters Query= NC_003494.1 Length=111362 Score E Sequences producing significant alignments: (Bits) Value seq14696 125 5e-24 seq14196 84.2 2e-11 seq7053 84.2 2e-11 seq3173 84.2 2e-11 >seq14696 Length=996851 Score = 125 bits (138), Expect = 5e-24 Identities = 159/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 91799 CATTTCCCTGTCTTTTCCTGCAAAGAGGACTACAACATCATCATGGACACTGTCAGACAA 91858 || ||||| ||| |||||| | ||||||| | ||||||||| ||||| || | Sbjct 753091 CACTTCCCCACCTTCTCCTGCCAGGAGGACTGCGACATCATCACAGACACAGTGCTCAAG 753032 Query 91859 CTGGAACAAAGTGGCTTCTACTGGGGTCCTTTGGGGGTCGAGGAGGCACATCGTATGCTG 91918 ||||| | | |||||||||||||| || | ||||| ||||| || ||||| |||||| Sbjct 753031 CTGGAGCGCTGCGGCTTCTACTGGGGCCCCCTAGGGGTGGAGGACGCCCATCGCATGCTG 752972 Query 91919 CGCAACTCGGCACTGGGCAGCTTTCTCATTCGGGATAGCAGGCAAAAGGACGTCTTGTTC 91978 | || | | ||||| |||| || || || || ||| |||| ||||| ||||| ||| Sbjct 752971 AGGGACGCTCCCCTGGGTAGCTACCTGATCCGCGACAGCCGGCAGAAGGATGTCTTCTTC 752912 Query 91979 ACGCTGTCGTATCACTCTGTGACCGGACCCGTCAGTGTG 92017 ||||| || || ||| | | |||| || ||||| ||| Sbjct 752911 ACGCTCTCCTACCACGCCAAGGCCGGGCCGGTCAGCGTG 752873 >seq14196 Length=26487 Score = 84.2 bits (92), Expect = 2e-11 Identities = 91/121 (75%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 22748 TGGCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCATATTCTGGC 22807 |||| |||||||| || || ||| || | || || || || || || |||| | ||||| Sbjct 19411 TGGCATTTGCGGCGGTGGAGGGCATCTTCTTCTCCGGCTCCTTCGCTTCCATCTACTGGC 19470 Query 22808 TGAAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAGCCGTGACG 22867 |||||||| | ||||||||||| || ||| ||| |||||| |||| ||| | |||| Sbjct 19471 TGAAGAAAAGAGGACTCATGCCAGGCCTGACGTATTCAAACGAGCTGATCAGCAGGGACG 19530 Query 22868 A 22868 | Sbjct 19531 A 19531 >seq7053 Length=111041 Score = 84.2 bits (92), Expect = 2e-11 Identities = 91/121 (75%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 22748 TGGCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCATATTCTGGC 22807 |||||||||| || || || || || | || || || || ||||| ||||| ||||||| Sbjct 46847 TGGCCTTTGCCGCCGTGGAGGGAATCTTCTTCTCGGGCTCCTTTGCCGCCATCTTCTGGC 46906 Query 22808 TGAAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAGCCGTGACG 22867 ||||||| || || ||||| || || | || ||||||||| |||| ||| | |||| Sbjct 46907 TGAAGAAGCGAGGCCTGATGCCCGGCCTGACCTTCTCCAACGAGCTGATCAGCAGAGACG 46966 Query 22868 A 22868 | Sbjct 46967 A 46967 Score = 84.2 bits (92), Expect = 2e-11 Identities = 91/121 (75%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 22748 TGGCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCATATTCTGGC 22807 |||||||||| || || || || || | || || || || ||||| ||||| ||||||| Sbjct 51764 TGGCCTTTGCCGCCGTGGAGGGAATCTTCTTCTCGGGCTCCTTTGCCGCCATCTTCTGGC 51705 Query 22808 TGAAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAGCCGTGACG 22867 ||||||| || || ||||| || || | || ||||||||| |||| ||| | |||| Sbjct 51704 TGAAGAAGCGAGGCCTGATGCCCGGCCTGACCTTCTCCAACGAGCTGATCAGCAGAGACG 51645 Query 22868 A 22868 | Sbjct 51644 A 51644 Score = 84.2 bits (92), Expect = 2e-11 Identities = 91/121 (75%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 22748 TGGCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCATATTCTGGC 22807 |||||||||| || || || || || | || || || || ||||| ||||| ||||||| Sbjct 60685 TGGCCTTTGCCGCCGTGGAGGGAATCTTCTTCTCGGGCTCCTTTGCCGCCATCTTCTGGC 60626 Query 22808 TGAAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAGCCGTGACG 22867 ||||||| || || ||||| || || | || ||||||||| |||| ||| | |||| Sbjct 60625 TGAAGAAGCGAGGCCTGATGCCCGGCCTGACCTTCTCCAACGAGCTGATCAGCAGAGACG 60566 Query 22868 A 22868 | Sbjct 60565 A 60565 >seq3173 Length=1876 Score = 84.2 bits (92), Expect = 2e-11 Identities = 91/121 (75%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 22748 TGGCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCATATTCTGGC 22807 |||||||||| || || || || || | || || || || ||||| ||||| ||||||| Sbjct 470 TGGCCTTTGCCGCCGTGGAGGGAATCTTCTTCTCGGGCTCCTTTGCCGCCATCTTCTGGC 411 Query 22808 TGAAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAGCCGTGACG 22867 ||||||| || || ||||| || || | || ||||||||| |||| ||| | |||| Sbjct 410 TGAAGAAGCGAGGCCTGATGCCCGGCCTGACCTTCTCCAACGAGCTGATCAGCAGAGACG 351 Query 22868 A 22868 | Sbjct 350 A 350 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356121704020519