Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetraodon_20nigroviridis_20[genbank_20GCA_5F000180735.1_202004-05- 14] 25,773 sequences; 342,403,326 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq14557 105 7e-18 seq18908 96.9 3e-15 >seq14557 Length=1650391 Score = 105 bits (116), Expect = 7e-18 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 139547 AAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTC 139606 || |||| || | ||| | || ||||| || || ||||| || ||| || |||| Sbjct 90835 AATCGCAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGG 90894 Query 139607 GAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCT 139666 ||||| ||||| || |||||| ||||||| | |||||||| || || |||||||| Sbjct 90895 CCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCC 90954 Query 139667 TTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTC 139726 ||||| ||| || || | | || | |||||| ||||||||||||||| ||| Sbjct 90955 TTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGCTGGGCTCCACCTCAAGGGTG 91014 Query 139727 ACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 | || ||||| || | || || ||||| || ||||| Sbjct 91015 ATGGTTTTGCCAGTGAGGGTCTTGACGAAGATCTGCAT 91052 Score = 102 bits (112), Expect = 8e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 139549 ACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGA 139608 ||||| || | ||| | || |||||||| || ||||| || ||| || |||| Sbjct 91293 ACGCAGGACAAGGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCC 91352 Query 139609 GTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTT 139668 ||||| ||||| || |||||| ||||||| | |||||||| || || |||||||| || Sbjct 91353 ATCTTCAAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTT 91412 Query 139669 GTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCAC 139728 ||| ||| || || | | || | |||||| ||||||||||||||| || | Sbjct 91413 GTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGCTGGGCTCCACCTCAAGAGTGAT 91472 Query 139729 CGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || ||||| || | || || || || || ||||| Sbjct 91473 GGTTTTGCCAGTGAGGGTCTTGACAAAGATCTGCAT 91508 Score = 100 bits (110), Expect = 3e-16 Identities = 155/218 (71%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 139549 ACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGA 139608 ||||| || | ||| | || |||||||| || ||||| || ||| || |||| Sbjct 91065 ACGCAGGACAAGGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCC 91124 Query 139609 GTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTT 139668 ||||| ||||| || |||||| ||||||| | |||||||| || || |||||||| || Sbjct 91125 ATCTTCAAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTT 91184 Query 139669 GTCGGTGATTTTTTGTTTTAGCTGTTC-CACTGT-GTCGGTGGGCTCCACCTCAACGGTC 139726 ||| ||| || || | |||| || ||| ||| ||||||||||||| | ||| Sbjct 91185 GTCCTGGATCTTGGCCTTCAC--GTTCTCAATGTTGTCACTGGGCTCCACCTCGAGGGTG 91242 Query 139727 ACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 | || ||||| || | || || ||||| || ||||| Sbjct 91243 ATGGTTTTGCCAGTGAGGGTCTTGACGAAGATCTGCAT 91280 >seq18908 Length=594 Score = 96.9 bits (106), Expect = 3e-15 Identities = 137/193 (71%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 139572 ACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCAT 139631 ||||||| || ||||| || ||| || |||| ||||| ||||| || |||||| Sbjct 567 ACTCTTTCTGCATGTTGTAGTCGGACAGGGTGCGGCCATCTTCAAGCTGCTTGCCAGCAA 508 Query 139632 AGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCT 139691 ||||||| | |||||||| || || |||||||| ||||| ||| || || | | Sbjct 507 AGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGT 448 Query 139692 GTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTA 139751 || | |||||| ||||||||||||||| || | || ||||| || | || || | Sbjct 447 TCTCAATGGTGTCGCTGGGCTCCACCTCAAGAGTGATGGTTTTGCCAGTGAGGGTCTTGA 388 Query 139752 CGAATATTTGCAT 139764 | || || ||||| Sbjct 387 CAAAGATCTGCAT 375 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495904186781600