Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetraodon_20nigroviridis_20[genbank_20GCA_5F000180735.1_202004-05- 14] 25,773 sequences; 342,403,326 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq14996 138 2e-27 seq15039 104 3e-17 seq13841 86.0 9e-12 >seq14996 Length=1273618 Score = 138 bits (152), Expect = 2e-27 Identities = 151/201 (75%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 8672 GGAACTCGGAACGCGGCCAACGGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATA 8731 || |||||||| | | ||||||||| ||| |||| ||| || || || | | Sbjct 185266 GGCACTCGGAAAGACACGTACGGACACCACTTGGTGTTGAGACACACCAGTTTCTCCAAA 185207 Query 8732 GTTGCACTCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAA 8791 || || |||||| ||| || || ||||| ||||||||||||||||||||||| Sbjct 185206 GTGGCCGTCTTGATGATATTGAAGCCTGTCTCTCCCCCGAAGGTGCTGGGTTTCCAGTAC 185147 Query 8792 CCCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCG 8851 |||||||||||||| |||| |||| ||||||||||| || ||||||||||||| || Sbjct 185146 TCCGGGGAGCAGATGGCGTTTCCCATCAGGCCTTTGAGAGAGAACGGAGCCCCCATCTGA 185087 Query 8852 AGAATGCTCTCACCGAAGATG 8872 | |||||||| || |||||| Sbjct 185086 AACATGCTCTCTCCAAAGATG 185066 >seq15039 Length=1367303 Score = 104 bits (114), Expect = 3e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 9622 ATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGA 9681 || || || | |||||| || || ||||||| ||| || || || | |||| Sbjct 1317534 ATCAGCCGCGAGGTCTGGAAAAGCCGTTCGTCGTCCCAGTCGGGGTGAACCTCCTTCAAC 1317593 Query 9682 ACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGC 9741 || || ||||| | |||||| |||| |||||||| || ||||||||||| ||||| || Sbjct 1317594 ACGTCACACACCCGGTTGTGCTCCCGAAGCCAGATGGTGGCGTACATCATCAGACCCGGT 1317653 Query 9742 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGA 9801 ||||| || || ||||| ||||| ||||| | ||| |||||| | | |||||| Sbjct 1317654 ACCAGACCGAAGGCCTCGTGACCAACAGCGAAGCGCTCGGATTCGGGAATATGGGGAGGG 1317713 Query 9802 TAGATCATGTGCACCTGGACATCTTTGACCGAGGGGGGATACATTTCACC 9851 || ||| | |||| || || || |||| || || |||| ||| || Sbjct 1317714 TATTGCATCTCCACCCCCACGTCCTTCACCGTTGGTGGGTACACTTCTCC 1317763 >seq13841 Length=41484 Score = 86.0 bits (94), Expect = 9e-12 Identities = 131/187 (70%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 8751 CAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGT 8810 |||| || || | || || || ||||||||||||||||| | || || || ||| | Sbjct 1742 CAAAACCGACCTTGCCCCCAAATGTGCTGGGTTTCCAGTATTCGGGAGAACATATGGGAT 1801 Query 8811 TCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGA 8870 | ||| ||| || |||||||| | || || |||| ||| | |||||||| || || | Sbjct 1802 TTCCCAAGAGTCCCTTGAGGGAGTAGGGGGCACCCATCTCCACCATGCTCTCTCCAAATA 1861 Query 8871 TGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGT 8930 |||| || | | || |||| || || |||| ||| | |||| ||| ||||||| Sbjct 1862 TGGCCCCCGGTCTTGTTTTCTCCAACATCAAACCGGGGTAATATTCCAGAGCGTCGATGT 1921 Query 8931 CTCCGTA 8937 | || || Sbjct 1922 CGCCATA 1928 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 708296539879120