Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetraodon_20nigroviridis_20[genbank_20GCA_5F000180735.1_202004-05- 14] 25,773 sequences; 342,403,326 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq10932 141 1e-29 seq15038 138 2e-28 seq10539 136 6e-28 seq2754 136 6e-28 seq2488 136 6e-28 >seq10932 Length=1209 Score = 141 bits (156), Expect = 1e-29 Identities = 192/268 (72%), Gaps = 0/268 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| || || || |||||||| || ||||||||||| || || Sbjct 307 CGCCAAGCGCCACCGCAAGGTGCTCCGCGACAACATCCAGGGCATCACCAAGCCCGCCAT 366 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || |||||||| || || || |||||||| |||| || || |||| || |||| Sbjct 367 CCGCCGCCTGGCTCGCCGCGGCGGCGTCAAGCGCATCTCGGGCCTGATCTACGAGGAGAC 426 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | ||| | ||||| ||| ||| |||| ||||| || ||| ||||| Sbjct 427 CCGCGGCGTGCTCAAGGTGTTCCTGGAGAACGTGATCCGGGATGCCGTCACCTACACCGA 486 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| |||||| |||||||| | || || || | || || || || Sbjct 487 GCACGCCAAGAGGAAGACCGTCACCGCCATGGATGTGGTGTACGCGCTCAAGCGGCAGGG 546 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 || | | || || || ||| ||||| Sbjct 547 ACGCACCCTGTACGGCTTCGGAGGTTAA 574 >seq15038 Length=1034458 Score = 138 bits (152), Expect = 2e-28 Identities = 177/243 (73%), Gaps = 1/243 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| | || || || |||||||| || ||||||||||| || || Sbjct 1030523 CGCCAAGCGCCACCGCA-AGGGCTCCGCGACAACATCCAGGGCATCACCAAGCCCGCCAT 1030581 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || |||||||| || || || |||||||| |||| || || |||| || |||| Sbjct 1030582 CCGCCGCCTGGCTCGCCGCGGCGGCGTCAAGCGCATCTCGGGCCTGATCTACGAGGAGAC 1030641 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | ||| | ||||| ||| ||| |||| ||||| || ||| ||||| Sbjct 1030642 CCGCGGCGTGCTCAAGGTGTTCCTGGAGAACGTGATCCGGGATGCCGTCACCTACACCGA 1030701 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| |||||| |||||||| | || || || | || || || || Sbjct 1030702 GCACGCCAAGAGGAAGACCGTCACCGCCATGGATGTGGTGTACGCGCTCAAGCGGCAGGG 1030761 Query 16672 CCG 16674 || Sbjct 1030762 ACG 1030764 >seq10539 Length=1868 Score = 136 bits (150), Expect = 6e-28 Identities = 176/243 (72%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| || || || |||||||| || ||||||||||| || || Sbjct 729 CGCCAAGCGCCACCGCAAGGTGCTCCGCGACAACATCCAGGGCATCACCAAGCCCGCCAT 788 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || |||||||| || || || |||||||| |||| || || |||| || |||| Sbjct 789 CCGCCGCCTGGCTCGCCGCGGCGGCGTCAAGCGCATCTCGGGCCTGATCTACGAGGAGAC 848 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | ||| | ||||| ||| ||| |||| ||||| || ||| ||||| Sbjct 849 CCGCGGCGTGCTCAAGGTGTTCCTGGAGAACGTGATCCGGGATGCCGTCACCTACACCGA 908 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| |||||| |||||||| | || || || | || || || || Sbjct 909 GCACGCCAAGAGGAAGACCGTCACCGCCATGGATGTGGTGTACGCGCTCAAGCGGCAGGG 968 Query 16672 CCG 16674 || Sbjct 969 ACG 971 >seq2754 Length=1882 Score = 136 bits (150), Expect = 6e-28 Identities = 179/244 (73%), Gaps = 3/244 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| ||||| || |||| | || || || || |||||||| || ||||||||||| || | Sbjct 155 CGCCAAGCG-CACCGCAAGGTC-CTCCGCGACAACATCCAGGGCATCACCAAGCCCGCCA 212 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| || |||||||| || || || |||||||| |||| || || |||| || |||| Sbjct 213 TCCGCCGCCTGGCTCGCCGCGGCGGCGTCAAGCGCATCTCGGGCCTGATCTACGAGGAGA 272 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | || | ||| | ||||| ||| ||| |||| ||||| || ||| |||| Sbjct 273 CCCGCGGCGTGCTCAAGGTGTTCCTGGAGAACGTGATCCGGGATGCCGTCACCTACACCG 332 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || | ||||| |||||| |||||||| | || || || | || || || | Sbjct 333 AGCACGCCAAGAGGAAGACCGTCACCGCCATGGATGTGGTGTACGCGCTCAAGCGGCAGG 392 Query 16671 GCCG 16674 | || Sbjct 393 GACG 396 >seq2488 Length=1744 Score = 136 bits (150), Expect = 6e-28 Identities = 176/243 (72%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| || || || |||||||| || ||||||||||| || || Sbjct 1713 CGCCAAGCGCCACCGCAAGTCATACCGCGACAACATCCAGGGCATCACCAAGCCCGCCAT 1654 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || |||||||| || || || |||||||| |||| || || |||| || |||| Sbjct 1653 CCGCCGCCTGGCTCGCCGCGGCGGCGTCAAGCGCATCTCGGGCCTGATCTACGAGGAGAC 1594 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | ||| | ||||| ||| ||| |||| ||||| || ||| ||||| Sbjct 1593 CCGCGGCGTGCTCAAGGTGTTCCTGGAGAACGTGATCCGGGATGCCGTCACCTACACCGA 1534 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| |||||| |||||||| | || || || | || || || || Sbjct 1533 GCACGCCAAGAGGAAGACCGTCACCGCCATGGATGTGGTGTACGCGCTCAAGCGGCAGGG 1474 Query 16672 CCG 16674 || Sbjct 1473 ACG 1471 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79051635565689